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LOCUS XM_059366887 5793 bp mRNA linear INV 02-SEP-2023 (LOC106093385), mRNA. ACCESSION XM_059366887 VERSION XM_059366887.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq; corrected model. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels internal stop codons :: corrected 6 genomic stop codons ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-102 OY720438.1 12345507-12345608 c 103-187 OY720438.1 12288512-12288596 c 188-272 OY720438.1 12288099-12288183 c 273-787 OY720438.1 12252360-12252874 c 788-824 OY720438.1 12245665-12245701 c 825-825 "N" 1-1 826-995 OY720438.1 12245495-12245664 c 996-996 "N" 1-1 997-1047 OY720438.1 12245444-12245494 c 1048-1430 OY720438.1 12244549-12244931 c 1431-2344 OY720438.1 12243448-12244361 c 2345-2448 OY720438.1 12243275-12243378 c 2449-2558 OY720438.1 12155963-12156072 c 2559-2724 OY720438.1 12150336-12150501 c 2725-2944 OY720438.1 12047349-12047568 c 2945-3208 OY720438.1 12046792-12047055 c 3209-3320 OY720438.1 12046617-12046728 c 3321-3513 OY720438.1 12046332-12046524 c 3514-3722 OY720438.1 12044458-12044666 c 3723-3853 OY720438.1 12044238-12044368 c 3854-4035 OY720438.1 12034145-12034326 c 4036-4259 OY720438.1 12025338-12025561 c 4260-4566 OY720438.1 12024955-12025261 c 4567-4776 OY720438.1 12020792-12021001 c 4777-5793 OY720438.1 12019715-12020731 c FEATURES Location/Qualifiers source 1..5793 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5793 /gene="LOC106093385" /note="uncharacterized LOC106093385; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins" /db_xref="GeneID:106093385" CDS 726..5615 /gene="LOC106093385" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; substituted 6 bases at 6 genomic stop codons" /codon_start=1 /transl_except=(pos:900..902,aa:OTHER) /transl_except=(pos:909..911,aa:OTHER) /transl_except=(pos:930..932,aa:OTHER) /transl_except=(pos:933..935,aa:OTHER) /transl_except=(pos:936..938,aa:OTHER) /transl_except=(pos:5370..5372,aa:OTHER) /product="LOW QUALITY PROTEIN: uncharacterized protein LOC106093385" /protein_id="XP_059222870.1" /db_xref="GeneID:106093385" /translation="MPKLRHYMSMDQPSATTIRKKTMTAICFVCNLPXMSHQVGLVWS GGNGWDDLVREQVKXLKXSFVEEIXXXFLLKLAAEESTIRQRLGGRXDSAAQINTPPS TSPPPGLQRRRRSSLAQLTDLLREWSGGVKHQSTQPQRTTKAPLNRRETLADLARSLP WRTTTTDASTNVGGSNYVAPRKRRESSAESGLRTARARRDSNTTEFVRHWNRRESSTA DEPTVVSVSVVVETSKGSSRRDSGESNNSSRRDSSIGRIITPSTTPPPPPRIGVSAVK RDSLAAPEFPNFRYEQRPSTSSAGSDSIQYFSTSSHNQVDSSCQALPPPTIITSSVTP PATSPTAPKGRRDSTTQCGRVNRRDSKAGISPERAPRLQRLQRQATAFDESCLPGGSR RGSQPALSPDPPEEGQRRSSRRDSLSPDSASRGARRDSRTHLSPDRSHERDGSPHRRH ALRRQSSSAARSSRSPDSTSICSSRDASPCGRAPPLPVAENASARPAIRRQSTTEEIL ISRGFRRQSTTEEMIRCRNFRRQSSQSDDVCRYRGRRDSSAQIIDGTIGTMTVETTST FFDSSTQTEPSPLYDNNHYHEECLRCNSCGLNLTGRNQKRARRFKNHILCDLHFADVA LMECSDFMQQLRSFKPQSLGCAVARRKSSTTLIFPLPPQACSDEFCEEYPHNLMPTPG YWIECSRQKISLPPNHTIWDESDSEHEDIRGGNTSDAYLERECSDLYEDDEDSEATPS PRKKTTIEDQWEQNGAFELISVEQETYEKYFFGHEHWNYFTSDEDLGPVILSIKQETL NGRDQFRILVRAGSYTVHGLIPASCVFADRYNREEVVRSLGKEVNLNPPLTLGQLPDT PEELLKLDQVFIKSELKVGVIYVKEDQYTEEQILDNNENSLLFDEFLTLLGDRVRLKG FDKYKGGLDTVHDLTGLYSVYTNWRNIEIMFHVSTLLPYERHDPQKLQRKRHIGNDIV CVVFLEADNTRFSPACIKSHFLHTFILVRVSARIKHKPTRYEVSVVTRDEVGAYKPYL WEQSVFEKGPMCREWLLTKIVNGERASYSAPKFARMQERTRSQMLEDLVMNLSNHAET GQIPKPYRRGSWRPIGHMRPSSPLLDSVRDQFEDYDQLAKDFTRVFLNIEPSCLTNAH LFDVTFLVGQSKQKARFIGVRAILGVRSRVFQEMLYGIQTGFGSPQIPVAEIFARPAP SLVSPQNQKPKSNNYLTVPDSDSIRPKSVPSSPMVKRAFSRLGTITAGWGRSIRNKNT NQLNPEDKKKWISSTDCSNRDSKEKDKDKSGNNLAVPRLSVCADAQKVDRAKLAQTEF TIIEFDPDTFRVLLDYLHTGTCPLTCVSIPGLLCAAEHYDLPELLQACFHHCKQFLRI EVVCPMLISLENYYWRYTSASELVNMILSFVENKAHALFKCPEFLNLSESMVQMIMCR ELQCPEIRKFEAMLAWAKYKVSKMKVHPNKDTQFEFECIMERLTRDLNLCRISPSELL SIVLPSKALKNERIMETLMMQVNLGTYRMQELDEYRQQLRSQESAEAEVHHRGGXDSK NVSFDIDRGGGSGASGGDVSNAYDSTADDEVEFYNDFDAAPTTSRVAAQMQAAKEARR RRWAGDGSSAGSSEGGKKF" ORIGIN 1 tttatattta ttttgcaccg aaatccgtac ttgggtacca aaagcctccc ttagaaatgc 61 atggcacgaa gggagttcca aaatgttgcc gaagccaaga attattcaga tgtatcactc 121 caacatgttc tcaatagtca ataaaggaat ttcattaaaa tccgacaagc aagtcagagt 181 ttaggggtat tcagatgtat cacgccaaca tgctctcaat agtcaataaa ggaatttcat 241 taaaatccga caagcaagtc agagtgttgg ggtgtctaaa tgtgtagaac cccccctatc 301 tcaaaaatcc ctcaaaaaaa accaccatca ccacaaaaac caaaataaaa actcaaccaa 361 ccacactccc caaaaaaaaa tccaatgagt aaactaaaaa aaaaatacta gttttattat 421 attaaaactc aatatgtttg tgtgtgcgtg tttgtgagtg tctaagtgtc ctgttaactc 481 ccccccaagc cttttcctac gactcaactc aaaaaacttt tcaaagcaaa acaaagtttc 541 aaaaggtaac gacgagcaag ggattcaaaa tattttttgt gcttgtgctt ggtggctgtt 601 gtaagcttat gctggacgct taaagcttaa gcttaacaga aatcggaaag cttacgcaca 661 aagttggaga ttattggtac atattacaaa cgaccgttgg ctgtgacgaa gcacaagtat 721 gcgccatgcc aaaactgagg cattacatgt ccatggatca accatccgcg accacaataa 781 ggaaaaagac gatgacggca atatgcttcg tctgcaacct gccantaatg tcccatcaag 841 tgggcctggt gtggtcgggt ggcaacggat gggatgatct tgtcagagaa caggtaaaat 901 agttgaaatg aagttttgta gaggagatat gataataatt tttgttaaaa cttgcagctg 961 aggagtcaac gatacgacag cgattgggtg gacgcnagga ttcggcagct caaatcaata 1021 cgcctcctag tacttcaccg ccgccgggtc tacaacgtcg tcgtcgcagt tctctggccc 1081 agctaaccga tttgttgcgc gaatggagcg gtggcgtcaa acatcaaagc acccagcctc 1141 agcgcaccac aaaggccccc ctcaatcggc gtgaaacttt ggccgatttg gcacgtagtt 1201 taccctggcg caccaccaca acagatgcat ccactaatgt gggaggttcc aattatgtgg 1261 caccacgcaa aagaagggaa tccagtgccg aatcggggtt aagaactgcc agagctcgca 1321 gagattcaaa taccactgaa tttgtaagac actggaatcg tagggaaagt agcacagcgg 1381 atgagccgac cgtggtgtcg gtttcagtgg tggtggagac ttctaagggg agctctcgtc 1441 gtgattcggg cgagagcaac aattccagtc gccgtgacag ttccataggt cgtattataa 1501 caccttcaac aacaccacct cctcctccac gcataggtgt cagtgcggtg aagcgagact 1561 cactggccgc tcctgaattt cccaacttcc gctatgaaca acgcccctcc acaagttcgg 1621 ctggttccga ttcaattcaa tatttctcta cttcttccca caatcaggtt gactccagct 1681 gccaggcgct gccgccgcct accataatca ccagttcggt aacaccaccg gctacaagtc 1741 ccacagctcc caagggcagg cgtgattcca ccacacaatg tggtcgcgtc aatcgtcgcg 1801 actccaaggc gggcataagt ccggagagag cccctaggct gcagcgttta caaaggcagg 1861 caacagcctt tgatgagagt tgtttgcctg gaggcagccg caggggttca caaccagccc 1921 tcagtccaga tcctccagag gagggtcaaa gacgtagttc cagaagggat tccctaagtc 1981 ctgatagtgc ttcgcgggga gctcgccgcg attcacgcac ccatttatca cccgatcgca 2041 gtcatgagcg tgatggtagc ccccatcggc gtcatgcttt gcgtcgccaa agttcttcag 2101 ccgcacgcag ctcaagatca ccagattcca ccagcatttg ttcgtcacgt gatgccagtc 2161 cctgtgggcg ggcaccacca ctgcctgtag cagaaaatgc ctcagccaga cctgccatac 2221 gacgtcaatc gaccaccgag gagatactga tatctcgggg atttcgccgc caatcgacca 2281 cagaggagat gatacgatgt cgaaattttc gacgtcagag ttcgcaaagc gatgatgtgt 2341 gtcgttatcg cggtcgtcga gattcaagtg cccaaataat cgatggcacc attggcacca 2401 tgactgtgga aaccacaagt accttctttg attccagcac acagacagaa ccttcaccac 2461 tctatgataa caatcattat catgaggaat gtttacgctg caattcctgt ggtctgaatt 2521 tgactgggcg taatcagaaa cgggccagaa gattcaagaa ccatatactc tgcgacctgc 2581 attttgcaga cgttgccctc atggagtgct ccgattttat gcaacagctg agaagcttta 2641 aaccccagtc cttaggttgt gctgtggcgc gtcgcaaaag ttcaacaaca ctaatatttc 2701 cactgccacc gcaggcatgt tcagatgaat tctgcgaaga atatccccat aatttaatgc 2761 ccacccctgg ttattggata gaatgttcgc gccagaaaat ctcattgcct cccaatcata 2821 cgatatggga tgaaagcgat tcggagcatg aggatataag gggtggcaat actagcgatg 2881 cctatctgga acgtgagtgc agtgatctgt atgaggatga tgaggattcg gaagcaacac 2941 ccagtcctag gaaaaagaca accatcgagg atcaatggga acaaaatggc gccttcgagc 3001 tgatatcggt ggaacaagag acctatgaga aatacttttt tggtcatgaa cattggaatt 3061 atttcaccag cgatgaggat ttgggtccag tgatattgtc catcaaacag gagaccctca 3121 atggtagaga tcaatttcgg atattggtgc gtgctggttc gtatacggtt catggcctaa 3181 tacctgcctc ctgtgtcttt gcggatagat ataatcgtga ggaagtagtt agatccttag 3241 gcaaagaagt taatttaaat ccccctttga cattgggcca attgccggac acacccgaag 3301 aattgctgaa attagatcaa gtttttataa aatctgaatt aaaagtaggt gttatctatg 3361 ttaaggagga tcaatacacg gaagagcaaa ttctagacaa taatgaaaat tcattgctct 3421 tcgatgaatt cctaaccctt ttaggtgatc gtgtacgcct aaagggtttt gacaaatata 3481 aaggtggcct tgatacagta catgatttaa caggactgta ttctgtatat acaaattggc 3541 gtaatataga gattatgttt catgtctcta cactattgcc ttatgagcga catgatcctc 3601 aaaaactgca acggaaacgt cacataggca atgatattgt ctgtgtggtc tttttggagg 3661 cagataatac ccgctttagt ccagcctgca taaaaagtca ttttctgcat acatttatat 3721 tggtaagggt ctcagcgaga ataaaacaca aacctacccg ctatgaagtt tcagtggtga 3781 cgagagacga agttggcgcc tataaacctt atttgtggga acaatctgtg tttgaaaaag 3841 gaccaatgtg cagagaatgg ctattgacga aaattgttaa tggtgaacgt gcctcatatt 3901 cagcgccaaa atttgcccgc atgcaagagc gtacacgctc ccaaatgctg gaggatttgg 3961 taatgaattt atccaatcac gctgagaccg gacaaatacc caaaccctat cgacggggct 4021 catggcggcc aattggtcac atgagaccct cgtcgccact attggattca gtgcgtgatc 4081 aatttgaaga ttatgatcaa ttggcgaaag attttacgcg agtttttctg aatatagaac 4141 catcgtgcct aacaaatgct catctatttg atgtcacctt tctggtggga caatcgaagc 4201 agaaagcccg tttcatagga gtgcgggcga tattgggtgt aagaagtaga gtgtttcagg 4261 aaatgcttta tggcattcaa accggtttcg gctcccccca aataccagtt gctgaaatat 4321 ttgcgcgtcc cgcgccctca ttggtttcac cacaaaatca aaaacccaaa agtaataact 4381 atctcaccgt gcccgattcc gattcgatac gaccgaaaag tgtgccttcc tcacccatgg 4441 tcaagagggc attctcgcgt ctgggcacca tcactgccgg ctggggtcgt tccatacgca 4501 ataagaatac caatcaactg aacccggagg acaaaaagaa gtggatatcc tcaacagatt 4561 gttcgaacag ggatagcaaa gaaaaagaca aggataaatc gggtaataat ttggctgtgc 4621 ctagactatc cgtgtgtgcg gatgcccaga aagtggatcg agcgaaattg gctcaaacag 4681 aattcaccat tatcgaattt gatccggata cctttcgtgt gctattggat tatttgcata 4741 cggggacatg tcctctgact tgtgtctcaa taccaggtct tctatgtgct gccgaacatt 4801 atgatctacc cgaattgctg caggcctgct ttcatcattg caaacaattt ctacgcatcg 4861 aggtggtgtg tcctatgctt atatccttgg aaaactacta ttggcgttac acttccgctt 4921 ccgagctggt caatatgata ttgtcctttg tcgagaataa ggcccatgcc ttgttcaaat 4981 gtcccgagtt cctcaatctc tccgagtcca tggtgcaaat gatcatgtgc cgtgagctgc 5041 agtgtcccga gataagaaaa ttcgaagcca tgttggcctg ggccaaatac aaggtttcca 5101 aaatgaaggt gcatcccaac aaggataccc aattcgaatt cgagtgcatt atggaacgtt 5161 tgacgcgtga cctgaacttg tgtcgcattt cacccagtga attgctgtcg attgtgttgc 5221 cctccaaggc attgaagaat gaacgcatca tggagacact gatgatgcag gtgaacttgg 5281 gcacttatcg catgcaggaa ttggatgagt atcgccaaca gttgcgcagc caagagtccg 5341 ccgaggcgga agtccatcat cggggtgggt gagatagtaa gaatgttagt ttcgatattg 5401 atcgtggtgg tggcagtggg gccagtggtg gggatgtttc aaacgcttac gattccacag 5461 ccgatgatga ggtggaattt tataatgatt ttgatgcagc tcccaccacc agccgcgtgg 5521 cagcccaaat gcaggcagcc aaggaggcca gaagacgacg ttgggctggc gatggttcat 5581 cggcgggcag tagtgaaggt ggcaagaaat tttaagcaag ttagaaatgg agaagaaaaa 5641 gaagaagcaa aaggtgagaa acttaattct tttattttta ttaaaatatt agggtgtcca 5701 aggtatatgt tttcaaggtt ttcataattg ctggcatgtt gtagggcctt tgaattaaga 5761 tgacaacgta tttaaaaaat tataaaatta aaa