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LOCUS XM_059366741 6374 bp mRNA linear INV 02-SEP-2023 (LOC106085723), transcript variant X1, mRNA. ACCESSION XM_059366741 VERSION XM_059366741.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6374 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6374 /gene="LOC106085723" /note="protein strawberry notch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:106085723" CDS 521..4999 /gene="LOC106085723" /codon_start=1 /product="protein strawberry notch isoform X1" /protein_id="XP_059222724.1" /db_xref="GeneID:106085723" /translation="MTSTKRSFDFDDAIDEDSGSDFDEDEDPDKIEVPGGGRDLQTAV TYAKNSTIKKQGHLNNNSLLISNQTGGATSAFNRNHTMPKKIQSSPSVGMPTSSSNAG GNPESAGGMPSFNTSQLMGMAALAAAMFNATSETKSPTNSGNMNLNIGAIGGMGSMSG GLQASTSATAASRQNSTATSISYQANSGLNKAASLLAQMTMGLGNFEPAPAPVASTAN NTGLSSQSKMNAIVLQKIQALVAANPQFLTSGIPNQLLQQLLMQPMKTIQKQVTNTPT TVVQHEEDEADYEEMGVAETYAEYWPAKLKLGKKHPDPVVETASLSSVEPCDVYYKLS IPLDTIQSGQLSALQLESITYASQAHDHLLPDGSRAGFLIGDGAGVGKGRTIAGIIYE NYMKGRKKALWISVSNDLKYDAERDLNDIGAAKIEVYALNKFKYAKINSEVNNNVKKG VIFSTYSALIGESNNKTGKYKSRLKQLLQWCGEDFDGLIIFDECHKAKNLCPVGSGKP TKTGQTVLELQNKLPRARVVYASATGASEPKNMAYMVRLGLWGQGTAFPTFNDFIAAV EKRGVGAMEIVAMDMKLRGMYIARQLSFHGVTFKIEEVTLSKDFRRIYDESVQLWVEA MHKFIEAADLIDAESRMKKTMWGQFWSSHQRFFKYLCIAAKVNHVVHIAREAIKYGKC VVIGLQSTGEARTLEQLEREDGELTDFVSTAKGVFQSLVEKHFPAPDRNRINRILGLS EPENHKSTIQSIIAEVKAANRYKDDPSSSSTNNSSNKRKSSRSEMRNNKKSRNDSWND SDDDDKDSDNESNNDSDFKNSESEESDAGNRSDSYESSDFNPFGASGSDSDTDPWLAR AKKKKKKKTKTKDASSATAATSLGQGSMNNNNNSSNFLTLSNVSPPKKKAPVSTQDKI QDLLQKKQELKGTVTPIGVHGVKMNYGPPPKDAIERACSMKEELLRKIELLGERLPPN TLDQLIDELGGPDNVAEMTGRKGRVVQSDDGSIQYESRSEQDVPLETLNITEKQRFMD GTKDVAIISEAASSGISLQSDRRVRNQRRRVHITLELPWSADRAIQQFGRTHRSNQVN APEYIFLISDLAGERRFASTVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRTAL ETVMKAIMGYEQPLVPPPTDYHGEFFKDIANALLGVGIIVNSETTPGLLSLDKDYNNI SKFLNRILGMPVDLQNRLFKYFTDTLAAIINQARKGGRFDLGILDLGAAGENVTRVKL VRFIRKHATGKAPAELHTVRVERGMIWQEAIEKYADLISENEGFYLSHQVRNNKRTAI LAVELENQPQNALQSGKKKDGKPSKKEIMFQIYRPNTGLQVRHESLAEIEKKYKKVTM SDAEKHWTEQYDASVNTCSHAYWNGNCRNVSVGAECEVGLRQRLYSVLAGSVLSVWSR VEQILAMRNANNKMQVIRMKTTEGEKIVGTLIPKSCHDLLVQDLKSDAERVEEVNF" polyA_site 6374 /gene="LOC106085723" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttaacatcg gtgcagagta agaaccacga atttaatttg ttaattaatt tgtcaatgat 61 ctggcaagaa acgacaacaa atcatctgca gaaaacataa aacgtaaaca taacgtgcgg 121 cgggttcaca cacaagaaaa acaaaccgca agaaaatatt aagatcttac gctaaagtcg 181 taataaaagt atcggaaatg gtgttgtgtg gcaaataagc agaaaaataa gataataaat 241 aaataccaat cgtgtaaaag catagatata tagcaatctt tgcttcaaaa aaacccaaaa 301 aattccaact tcctgaaaga gttataaaaa cacaatagtc atcatatcag ttgttggtcg 361 gttagttcgg ggcgaaaaaa aaaaaagaat aacgaaaaga agcaaccaag atataatcgt 421 tgtaagtgtc tgtgttaaaa aaataagtga tttcttttga aacgtaatta agggtgaaaa 481 ttttctatag atcttcagtg tttcaaagat aaccaacaaa atgacttcaa ctaaacgttc 541 attcgatttt gatgatgcca tcgatgagga ttctggatct gattttgatg aagatgaaga 601 tccagataaa atagaagttc caggtggcgg aagagattta caaaccgctg ttacatacgc 661 caagaacagt acaattaaaa aacaaggcca cctcaataat aattccctat taatttcaaa 721 tcaaacggga ggagcaacat ctgcatttaa tagaaaccac actatgccga aaaagataca 781 aagttcaccc tcggtcggta tgcccacaag tagttcaaat gctggcggaa atcccgaatc 841 ggcaggtggt atgccatcat ttaatacctc acaattaatg ggcatggctg ctttagctgc 901 agccatgttc aatgcaacca gtgaaaccaa atcccctaca aattctggaa acatgaactt 961 aaatatagga gctattggtg gtatgggaag catgagtgga ggccttcaag cttcaacatc 1021 agccactgct gcttcaagac aaaactctac agcaacctct attagttatc aggcaaattc 1081 tggtcttaat aaagccgcct ctttgttggc gcagatgacc atgggtttgg gtaactttga 1141 accggcacct gcccctgtcg cctcaacagc aaacaatacc ggcctttcat cacaatccaa 1201 aatgaatgcc atagttttgc aaaagattca agctttagtc gcggcaaatc cacaattcct 1261 aacaagtggt ataccaaatc aattattgca acagttgcta atgcagccca tgaagactat 1321 tcaaaagcag gttaccaata ccccaacaac tgtagtacaa cacgaagaag atgaggcgga 1381 ttatgaggaa atgggggtgg cagaaaccta tgcggaatat tggccagcaa agttaaaact 1441 gggcaagaaa catcctgatc ccgtggtgga gactgcctcc ctgtcttcgg tagaaccctg 1501 tgatgtttac tacaaacttt ccatacctct cgataccata caaagtggcc aattaagtgc 1561 tttgcaattg gaatccataa cctatgcttc tcaggcgcat gatcatcttt tacccgatgg 1621 cagtcgtgct ggttttctca ttggtgatgg tgctggtgtg ggcaaaggtc gtacaattgc 1681 tggtattatc tatgaaaact atatgaaggg gcgtaaaaag gctttatgga tatcagtatc 1741 gaatgatttg aaatatgatg ccgaaaggga tttaaatgat attggagcgg ctaaaattga 1801 ggtgtatgct ttgaataagt ttaaatatgc caaaatcaat tccgaggtta acaacaatgt 1861 aaagaaaggt gtcatcttta gcacctactc cgcattaatc ggtgaatcga ataacaagac 1921 tggtaaatat aaatcaagac ttaaacaatt acttcaatgg tgcggcgagg atttcgatgg 1981 cctgataatt ttcgatgagt gtcacaaggc caaaaatttg tgtcccgtgg gttcaggaaa 2041 gcctacaaaa accggtcaaa ccgtattgga attgcagaat aaattaccca gagctcgtgt 2101 agtatatgct tcggcaactg gtgcttcaga acccaaaaac atggcgtata tggtgcgttt 2161 aggtttatgg ggtcagggta cggcttttcc cacatttaat gatttcatag cggctgttga 2221 gaaaagaggt gttggagcca tggaaattgt ggccatggac atgaaattgc gaggcatgta 2281 tatagctcgc cagctaagtt ttcatggagt aactttcaaa atcgaagaag taactttgtc 2341 caaagatttt cgccgcatct atgatgagtc ggtacaattg tgggtagaag ccatgcacaa 2401 attcattgag gctgctgatc taatcgatgc cgagagtcgc atgaaaaaaa ccatgtgggg 2461 tcaattttgg tcgtcacatc aacgtttttt caaatatttg tgtatagctg ccaaagttaa 2521 tcatgtcgtg cacatagctc gagaagccat taaatatggc aaatgtgtag tcataggtct 2581 acaatcgacg ggtgaagcac gtactctgga acaactggaa cgagaagatg gagaacttac 2641 agattttgta tcaacagcaa agggcgtttt tcaatctcta gtcgaaaagc attttccagc 2701 tcccgatcgc aaccgcatta atcgcatatt aggtctctct gaaccagaga atcacaaatc 2761 caccatacaa tcaattattg ccgaagttaa ggcagccaat agatataaag atgatccctc 2821 ctcttcgtcc accaataaca gtagcaacaa acgaaaatct tcacgttctg agatgcgcaa 2881 caataagaaa tcgcgcaatg attcttggaa tgattccgat gatgatgata aggattccga 2941 taatgaatcc aataatgatt cagattttaa aaattccgaa tcagaagaat cggatgccgg 3001 caatcgtagt gacagctacg aatcatccga ttttaatcca tttggggcaa gtggctcaga 3061 ctcagatact gatccttggt tggcccgtgc caaaaagaag aagaaaaaga agacgaaaac 3121 caaggacgca tcctccgcaa cagcagctac atcattggga caaggctcca tgaataacaa 3181 caacaatagc agtaatttct taacgctgag taatgtttca ccaccgaaaa agaaggctcc 3241 cgtctctaca caagacaaaa ttcaagattt actacagaag aaacaagaac tcaagggaac 3301 agtgacaccc ataggagtgc acggggtcaa aatgaattat ggtccaccgc ccaaggatgc 3361 cattgagaga gcctgctcca tgaaagagga acttttgcgt aaaatcgaat tactgggcga 3421 acgtttgcca cccaacactt tggatcagct aatcgatgaa cttggcgggc cggacaatgt 3481 agccgaaatg acaggccgca aaggacgtgt ggtccaatcc gatgatggtt ctatacagta 3541 cgaatcaaga tcggaacaag atgttcctct ggaaacctta aacattaccg aaaaacagcg 3601 ctttatggat ggcaccaaag atgtggccat tatctcggag gccgcctcaa gtggtatttc 3661 gctgcaaagt gatcgtcgtg tgcgcaatca gagacgacgt gtccatatca ccctcgaatt 3721 gccgtggtct gcagatcgcg ccatccaaca gttcggtcgt acacatcgtt ccaatcaagt 3781 caatgcaccc gaatacatat tcctcatctc cgatttggcg ggtgaacgac gtttcgcctc 3841 caccgtggcc aagcgtttag aatcattggg tgccttaacg catggcgatc gtagagctac 3901 tgagacgcgc gacttgtcgc aattcaatat tgacaacaaa tatggccgta cggctttaga 3961 aactgtgatg aaagctatca tgggctatga acagcccttg gtgccaccac ccaccgatta 4021 tcacggcgaa ttctttaagg atattgccaa tgccctgcta ggtgtgggta ttatagttaa 4081 tagtgaaacc acaccgggtt tgttgagctt ggacaaagac tacaataata tatcgaaatt 4141 tttgaataga attttgggta tgccagtaga tttgcaaaat cgtctattca aatatttcac 4201 tgataccctg gcggccatta tcaatcaggc tcgcaaggga ggacgttttg atttgggtat 4261 tttagatttg ggagcggctg gcgagaatgt aactcgagtc aaactggtgc gatttatacg 4321 taaacatgcc actggcaaag ctcccgccga attacatact gtgcgtgtgg agcgaggcat 4381 gatatggcaa gaggctattg agaaatatgc cgacttaatt tctgaaaatg aaggctttta 4441 tctttcacat caggtgcgaa ataacaaacg tactgctatt ttggctgtcg aattggaaaa 4501 tcaacctcaa aatgctttgc aaagcggcaa gaagaaggat ggtaagccca gtaaaaaaga 4561 gatcatgttc cagatttacc gtcccaatac cggtcttcaa gtacgtcatg agtcgttagc 4621 tgaaatcgaa aagaaataca aaaaagtaac catgtcagat gccgaaaagc attggaccga 4681 acaatatgat gcttcggtta atacctgctc acatgcttat tggaatggta attgccgtaa 4741 tgtcagcgtg ggtgcagaat gtgaggttgg tctacgacaa cgtttgtata gcgttttggc 4801 tggctctgtt ctatcggtgt ggtcgcgagt ggaacaaatc ttggccatgc gtaatgccaa 4861 taataagatg caagttatac gcatgaaaac cacagaaggt gaaaaaattg taggcactct 4921 cataccgaaa tcatgtcatg atctattagt acaggatctt aagtctgatg ccgaaagggt 4981 ggaagaagtc aacttctaaa aatacaaaag caaactttta agttacccta aactaaccaa 5041 ggttactttt tataaaaagt accatacaac tggttaagaa acacacatat tttatttttc 5101 ataattctta ttaagaatat tttttgaaaa atattctaaa ataacaacaa ataaacactt 5161 gagttgtagt attaaatagc tacaactgtg aaagaaaaag aaaaccaaca aaccaaaacg 5221 acgcttaatt tatggacttt atttttcatt taagtttatt tcctttttta cataattgat 5281 aaataaaaac aaaaatatta ttcttaaata ttacaaaaac agaaacaaac aatccaaaat 5341 aataaaaaca aaacacagaa aaatttaaat gaaaccatat acgactttta taattataaa 5401 ctaaactata caaaaattaa ttataattaa tatttaatta taataacaat aatgcttaat 5461 gattatacaa aaaaaaagaa aaccacattt gagaaattat cataactata gtcaataact 5521 cttaaacaaa ccggaacaca cacacacaca cacaaatttt aaattataaa cctcaaaaaa 5581 caaatacaag acatcttaaa tggatataat atggttaacc caaaatagca tacatgggcg 5641 gaaagtgatt gtaacgacaa agaattccct caaaaaaaaa aaaaaactct tgctgtatag 5701 tttcccttat taatttaaac aggaaatgtt tatttttctt ctacatttca gtttaatttc 5761 ttgtttcttg cttaatcagc tataggactt tagttattat ttttgatatt ctaacaacaa 5821 attcaattac aattgaaatt aatccaatta attccaaaaa aaaactctta acattatcat 5881 aatgttgata ttgaattaaa tttataattt attgggagaa aacaaaaaca aaattttatt 5941 tcgttatcgt ttccatgttt ttcaaaaaca aaaatataga aaactgaaaa tttgattttg 6001 actttttttt tgtacaccaa acagagcaaa ctcagtaaaa acacaaatta agtttcgtta 6061 ttttattttc tttacggaga tcatagttta tttattattc ttaatgctat tcttactatt 6121 attttaaata ttcattttac aaaattattt tctaaaacct aatttttaag aaaatttcta 6181 gtttgtatgt agtttcgtag aaatgaaaac caacaacaaa aacaaaaaaa aatggaaaaa 6241 atccaaaaaa aaaaataaat aaaattctat tttatgtttg atgtatatgt acattaatga 6301 gaactacaaa cagcaacaaa caaaaataaa tgaatgaata ttgaaataaa aattgaaaaa 6361 ttctaaaata caaa