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LOCUS XM_059366651 7031 bp mRNA linear INV 02-SEP-2023 transcript variant X7, mRNA. ACCESSION XM_059366651 VERSION XM_059366651.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7031 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7031 /gene="LOC106090811" /note="CAD protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1404 Proteins" /db_xref="GeneID:106090811" CDS 69..6746 /gene="LOC106090811" /codon_start=1 /product="CAD protein" /protein_id="XP_059222634.1" /db_xref="GeneID:106090811" /translation="MSRHNCYLMLEDSTVFPGHAFGAKATVDGEVVFQTGMVGYPESM TDRSYRAQILVLTYPLIGNYGVPDFKEKDESGLPKHFEWLEGISVAALVVGEVCEQPS HWRSMQTLSQWMQSHGVPGIGGIDTRALTKKIRENGSILGRIVYECTERFDELTFSDP NIRNLVAECSVRKPLVFNETGSPRICAVDCGLKLNQIKCFVKRGARVELVPWNHDLDE STFDGLFISNGPGDPVVCKDTVGQIQKVLKSGKKPIFGICLGHQLLSTAIGCKTYKMK YGNRGHNLPCIHHGSGRCFMTSQNHGFAVDTDTLPVEWEPLFTNANDNTNEGIIHKHK PYFSVQFHPEHTAGPEDLELLFDVFLDAIKKPAIAGKSLSLRQQLTQRLMYSPKPESL LEKRPRKVLILGSGGLSIGQAGEFDYSGSQAIKAMKEEKIQTVLINPNIATVQTSKGL ADKCYFLPLTPEYVEQVIKAERPNGVLLTFGGQTALNCGVELERSGVFSKYNVKILGT PIKSIIETEDRKIFAERVNEIGEQVAPSEAVYSVEEALKAAQRIGYPVMARAAFSLGG LGSGFADSEEELEILARQALAHSSQLIIDKSLKGWKEVEYEVVRDAFDNCITVCNMEN LDPLGIHTGESIVVAPSQTLNNREYNMLRSTALKVIRHFGVVGECNIQYALNPHSEEY YIIEVNARLSRSSALASKATGYPLAYVAAKLSLGVPLPSIKNSVTGVTTACFEPSLDY CVVKIPRWDLAKFIRVSKNIGSSMKSVGEVMAIGRNFEEAFQKALRMVDNAVTGFDPH LQQVNVEELKEPTDKRPFVLAAALKADYSVDELHSLTKIDRWFLNKMQNIIQFYNQLE ESGSTLTIEQLWQAKRMGFSDKQLAEAIKVTELAIRQQRKEAGIVPFVKQIDTVAGEW PAATNYLYLTYNASENDIEFPGGYTIVVGSGVYRIGSSVEFDWCAVGCLRELRNLGKA TIMINYNPETVSTDYDMCDRLYFEEISFEVVMDIYELEHSEGIILSMGGQLPNNIAMD LHRQQAKVLGTSPESIDSAENRFKFSRMLDRKGILQPRWKELTNHESAIKFCEEVGYP CLVRPSYVLSGAAMNVAYSDQDLLTYLSAASLVSKEHPVVISKFLTEAKEIDVDAVAA DGEILCMAVSEHVENAGVHSGDATLVTPPQDLNAETLENIKRITSDLAGLLDVTGPFN MQIIAKNNELKVIECNVRVSRSFPFVSKTLNHDFVATATRAIMGLPVEPIDVLHGVGK VGVKVPQFSFSRLAGADVQLGVEMASTGEVACFGDNRYEAYLKGMMSTGFQIPKKAIL LSIGSFKHKMELLPSIRDLAKMGYKLYASMGTGDFYVEHGVKVECVQWTFDKNVTDDL SGGELMHLAEFLSQKQFDMIINLPMRGGGARRVSSFMTHGYRTRRLAVDYSIPLVTDV KCTKLLVESMRVTGRRPAMKTHTDCMTSRRMVTLPGFIDVHVHLREPGATHKEDFASG TAAALAGGVTMVCAMPNTNPSIVDRTSFSLFQELAKIGARCDYALFVGASDNNWQHIH ELAAQAAGLKMYLNDTFSTLKMTDMTIWEKHMQHWPKRAPIVCHAERQTMGAVILMAH LMDRAVHICHLARKEEIMIVKAAKEKGMRVTCEVCPHHLFLSTKDVPLIGSGRAEVRP VLCSPEDQKALWDNLEYIDVFATDHAPHTWEEKNSESPPPGFPGLESILPLLLQAVDE GRLALDDIKNKFYRNPKRIFSLPDQPNTYVEVDLDEEWVISKDFMHSKSKWTPFQGTK VKGKVHRVVLRGEVAFIDGEVLVQPGFGQNVRSQYNLAKPMEMLEIKTSCDNLENIKA LDRSTEFVSDSQANEAFSRLLSETPSKVHFSGDPSFLRPISPLPRIRCDSASNATLRE LIQKNSALNAPISPVAPTLLGRHVLSVDMFSKEQLNDIFNLAQMLKSRVSKDRPVDDL LKGKIMASVFYEVSTRTSCSFAAAMQRLGGRVIYMDETSSSVKKGETLEDSIAVMAGY SDVVVLRHPEPGAVGRAALHSRKPLINAGDGVGEHPTQALLDIFTIREEIGTVNGLTI TMVGDLKHGRTVHSLARLLTLYNVTIQYVSPDSLRMPNHIMDYLSSKGISQKTLDSLE DALPTTDVLYMTRIQRERFATEEEYERCCGKFIVTPKLMTRASRRTIVMHPLPRVFEI SKDFDSDPRAAYFRQAEYGMYIRMALLAMVVGCRN" polyA_site 7031 /gene="LOC106090811" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcaaaaatta ataaaaaaaa ttaatttttg caccaccccc ctggccataa gcattgccat 61 caatcatcat gtctcggcat aattgctatt tgatgcttga ggactcgact gtttttccgg 121 gtcacgcttt cggtgccaag gccactgttg atggcgaagt tgtgtttcaa actggcatgg 181 ttggttatcc cgagtccatg acagatcgtt catatcgtgc ccagatttta gttcttacct 241 atcccttgat aggtaattat ggtgtacccg attttaagga aaaagatgag agtggtttgc 301 ccaaacactt cgaatggttg gagggtattt cggtggctgc cttagtagtg ggtgaggtgt 361 gtgagcagcc ttcacattgg cggtccatgc agactttgtc gcaatggatg cagtcgcatg 421 gagtgccggg cattggtggc atagatactc gtgccttgac caagaagata cgtgaaaatg 481 gttccatttt gggacgcatt gtctacgagt gcaccgagcg cttcgatgag ctgacatttt 541 ctgatcccaa tataagaaat ttggtggccg agtgttcggt taggaagccg ttggtgttta 601 atgagacagg ctcgccacgc atctgtgcag tggattgtgg cctcaaattg aatcaaatca 661 aatgttttgt gaagcgtggt gctcgtgtgg agctggtgcc ctggaatcat gatttggatg 721 agagcacatt tgatggcctg tttatttcga atggtcccgg cgatccggtg gtctgcaagg 781 acactgtggg gcagatacaa aaggtcttga agtcgggcaa gaagcccata tttggcatat 841 gtctgggcca tcagttgctg tccacggcca tcggttgtaa gacctataaa atgaaatacg 901 gcaatcgtgg tcacaatctg ccttgtatcc accatggcag cgggcgctgt tttatgacct 961 cacaaaatca tggatttgct gtggacaccg atacattgcc cgtggaatgg gagcctttgt 1021 tcaccaatgc caatgacaat accaatgagg gtatcatcca caagcacaaa ccctactttt 1081 cggtgcaatt ccatcccgag catactgctg gccctgagga tctggaatta cttttcgatg 1141 tcttcttgga tgctatcaaa aaacctgcca tagcgggaaa atccttaagc ttgcgccaac 1201 agttgactca acgtctgatg tattcaccca agcccgagtc cctgttggag aagagacctc 1261 gaaaagtttt gattttgggc tctggtggtc tatccatagg ccaggcgggc gaatttgatt 1321 attctggttc tcaggccatt aaggccatga aggaggaaaa aatacaaacg gtgctcatca 1381 atcccaacat agccactgtg cagacttcca agggcttggc agataagtgc tacttcttgc 1441 ctttgacgcc tgaatatgtg gagcaggtca tcaaggccga aagacccaat ggagtgctct 1501 tgaccttcgg aggacaaacc gccttgaatt gtggtgtgga gctggagcgc tctggggtgt 1561 tttccaaata taatgtcaag attttgggca cacccatcaa atctattatt gagaccgagg 1621 atcgtaagat ttttgccgag cgcgtcaatg aaatcggaga acaggtggct ccctcggaag 1681 cggtctattc ggtggaggag gctttgaagg cggcccagcg cataggatat cctgtaatgg 1741 ccagagctgc cttttccctg ggtgggctgg gttctggatt tgccgacagc gaagaggagc 1801 tcgagatcct ggcccgccag gccttggccc attccagcca attgattatt gacaagtccc 1861 taaagggctg gaaggaggtg gagtatgagg tggtgcgaga tgcctttgac aattgcataa 1921 cggtgtgcaa catggagaat ctggatcctt tgggcattca tacgggcgaa agcattgtgg 1981 tggctccctc acagactctc aacaacaggg agtacaatat gctgcgttcc acagccctaa 2041 aggtcatacg gcattttggt gtggtgggtg aatgcaacat ccagtatgcc ttgaatcccc 2101 attccgagga gtactacatc attgaagtga atgcccgtct gtcacgcagt tctgccttgg 2161 ccagcaaggc cactggatat cccttggcct atgtggctgc caagttgtcg ttgggtgtgc 2221 ccctgccctc cataaagaac tctgtgacgg gagtgaccac tgcctgcttt gaaccctcgc 2281 tggattattg tgtggtcaag ataccacgtt gggatttggc caagtttata cgtgtcagca 2341 agaacatagg cagctccatg aagagtgtgg gcgaggtcat ggccattggc cgcaatttcg 2401 aggaggcttt tcagaaggcc ctacgtatgg tggataatgc agtgacaggc tttgatcccc 2461 atctgcagca ggtaaatgtg gaagagctga aggaacccac cgacaagaga ccctttgtcc 2521 tggccgccgc cctcaaagcc gactactcgg tggatgaatt gcattcgctg accaaaatcg 2581 atcgctggtt cctgaataaa atgcagaaca tcattcagtt ctacaatcaa ttggaggaat 2641 ctggcagcac tctaaccata gagcaactgt ggcaagccaa acgtatgggt ttttccgaca 2701 aacaattggc ggaagccata aaggtcaccg aattggccat acgccagcag cgcaaagagg 2761 ccggcatcgt accatttgtc aagcaaatcg atactgtggc cggggagtgg ccagcagcca 2821 ccaattacct ctatctcacc tataatgcgt cggaaaatga catcgagttt cctggaggct 2881 acaccatagt ggtgggttct ggtgtctatc gcattggctc ctcggtggaa tttgattggt 2941 gtgccgtggg ctgtctgaga gagctgcgaa atcttggcaa ggctaccatc atgatcaact 3001 acaacccgga gacggtgtcc accgactatg atatgtgtga ccgtttgtat ttcgaggaga 3061 tcagttttga agtagtcatg gacatctatg aactggagca ttccgagggc atcatcctct 3121 ctatgggtgg tcagctgccc aataatatag ccatggactt acatcgccag caggccaagg 3181 tgctgggcac ctctcccgaa tccatagatt cggcagagaa tcgttttaaa ttctcccgca 3241 tgttggatcg caaaggcatt ctacagcctc gctggaaaga gctaaccaat catgaaagtg 3301 ccatcaaatt ctgtgaggaa gtgggttatc cctgtcttgt ccggccttcc tatgttctct 3361 ccggggcagc catgaatgtg gcctattcgg atcaagatct gctgacttat ctcagtgctg 3421 cctcgctggt tagtaaagaa catccggtgg ttatatcaaa attccttacc gaagccaagg 3481 aaatcgatgt ggatgctgtg gccgcggatg gtgaaatttt atgcatggcc gtttcggagc 3541 atgtggagaa tgccggcgtt cactcgggcg atgctacctt ggtgacacca ccccaggatt 3601 tgaacgccga aactttggag aatatcaaga gaataaccag tgatctggct ggcctcttag 3661 atgtaacggg tccattcaat atgcagatta tagccaaaaa taatgaactc aaggttattg 3721 agtgtaatgt tcgtgtttcc cgctccttcc cctttgtctc caagacgttg aaccatgatt 3781 ttgtggccac tgccaccagg gccattatgg gcttgccagt ggagccgata gacgttttac 3841 atggcgtagg caaggtgggc gtcaaagtgc cccaattcag tttttcgcgc ctggccggtg 3901 ccgatgtgca gttgggtgta gaaatggcct ccaccggaga ggtggcctgc tttggtgata 3961 atcgttacga ggcctatttg aagggtatga tgtccactgg gttccagata cccaaaaaag 4021 ccatactttt gtctattgga agtttcaagc ataaaatgga acttttacct tccattcgag 4081 atctggctaa gatgggctat aaactgtatg cttccatggg tacgggagat ttttatgtgg 4141 aacatggagt aaaggtggaa tgcgttcagt ggactttcga taaaaatgtt accgacgatc 4201 ttagtggagg tgagcttatg cacttggccg agttcttatc ccagaagcaa ttcgatatga 4261 taatcaatct acccatgaga ggagggggag ctagaagagt ttcctccttc atgacccatg 4321 gctatcgcac acgacgcctt gccgtcgatt actccattcc cctggtcacc gatgtgaagt 4381 gcactaaact attggtagaa tctatgcgag tgactggtcg caggcctgcc atgaagaccc 4441 atacagattg catgacctca aggcgaatgg taacgctgcc aggctttata gatgttcatg 4501 tacatctccg agaaccagga gccacacaca aagaggactt tgccagtggc acagctgccg 4561 ctttagctgg aggtgttacc atggtttgtg ccatgcccaa caccaatccc tccatagtgg 4621 atcgtaccag cttttcactg ttccaagaat tggccaagat tggggcacgc tgcgattatg 4681 ccctctttgt gggagcatcg gacaacaatt ggcagcatat ccatgagttg gccgcccagg 4741 cggcaggatt aaagatgtat ttgaatgaca ctttcagtac tttgaaaatg accgatatga 4801 ccatttggga gaagcacatg cagcattggc cgaagcgtgc tcccattgtt tgccacgccg 4861 aaagacagac catgggtgct gtgatactaa tggcccatct catggatcga gctgtccaca 4921 tctgccattt ggctcgcaag gaggagataa tgattgtcaa ggcagccaag gagaagggca 4981 tgcgagtgac ttgcgaggtg tgtccccatc atttgttttt gtccaccaag gatgtaccgc 5041 tcatagggtc agggcgagct gaagtaaggc ccgtcttatg ttctcccgaa gatcaaaagg 5101 ccttgtggga taatctggag tacatagacg ttttcgccac ggatcatgct ccccacactt 5161 gggaagagaa aaattcagag agtcctcctc caggattccc aggattggaa tctatactgc 5221 ctttgctgtt gcaggcagtg gatgagggac gtctagcgct ggatgacatc aaaaataaat 5281 tctatcgcaa tcccaagagg atattcagtt tgccagatca acccaatacc tatgtggagg 5341 tggatttgga tgaggagtgg gtgatatcga aagactttat gcactccaag tccaaatgga 5401 cgcctttcca gggcaccaag gtcaagggca aggtgcatcg ggtggtattg cgcggcgaag 5461 tggcctttat agacggtgag gtgttggtgc aacccggctt tggacaaaat gtgcgcagcc 5521 aatataatct cgccaagccc atggaaatgt tggagattaa gacctcgtgc gataacttgg 5581 aaaatataaa agccttggat cgcagcactg agttcgtctc tgattcacag gccaatgagg 5641 ccttctctag attgctctcc gagactcctt cgaaggttca cttttcggga gatcccagct 5701 ttttgcgtcc catatctcca ttgcctcgca ttcgttgtga ttcggccagc aatgccacac 5761 tgcgagaact tatacagaaa aattctgcct taaatgctcc catttcacca gtggcgccca 5821 ctttgctggg acgccatgtc ttgtcggtgg atatgtttag caaagagcaa ttgaatgata 5881 tcttcaattt ggcccaaatg ttgaagagtc gagtgtccaa ggatcgccct gtcgacgatt 5941 tgctgaaggg taaaataatg gcctccgtct tctatgaggt cagcaccaga acttcatgca 6001 gctttgcagc agccatgcaa cgcttgggag gacgtgtcat ttatatggat gagacaagtt 6061 cctcggtgaa aaagggcgag acattggagg acagcattgc cgttatggca ggatattccg 6121 atgtggtggt gctaaggcat cccgagccgg gcgcagtggg tcgcgccgct ttacactcac 6181 gcaaacccct catcaatgcc ggcgatggtg tgggcgaaca ccccacacag gccttacttg 6241 acatctttac catacgcgaa gagataggca ctgtcaatgg tttgactatt accatggttg 6301 gtgatttaaa acatggccgt actgtacatt ctttggcccg cctattgact ttgtataatg 6361 ttaccataca atatgtcagc ccggatagtt tacgcatgcc taatcacata atggattatc 6421 tatcatcaaa gggcattagc caaaagaccc tggatagtct agaggatgct ttgcccacca 6481 cagatgtttt gtatatgaca cgcatacaaa gagaacgctt tgccaccgag gaggaatatg 6541 aaaggtgctg cggcaaattc atagtcacac cgaaactaat gacacgcgcc agtcgccgca 6601 ccatagtcat gcatcctttg cctcgtgtct ttgagataag caaagatttc gattcggatc 6661 ctagagcagc ttacttccgt caagcggaat atggcatgta cattcgcatg gcccttttgg 6721 ccatggtggt gggttgtcgc aactgatatg aagcaccaca aacgccgccg ccgccggcgc 6781 caaatattgc agaagaagga cgactgtgac tttgatgttt ttcagaaacc aacttttcca 6841 ttaaccgaaa acaggacaca tgaatacact tatgaagtgt gacatccagt tcattttaac 6901 cattttttct atacaatttt tatatgaatc taacctacat actaaaccta acctacatac 6961 taatctaacc tactatacta aagttagttg ataagataaa acgtcaaaaa atttttgata 7021 cgctgaaata a