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LOCUS XM_059366649 7100 bp mRNA linear INV 02-SEP-2023 transcript variant X5, mRNA. ACCESSION XM_059366649 VERSION XM_059366649.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7100 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7100 /gene="LOC106090811" /note="CAD protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1404 Proteins" /db_xref="GeneID:106090811" CDS 138..6815 /gene="LOC106090811" /codon_start=1 /product="CAD protein" /protein_id="XP_059222632.1" /db_xref="GeneID:106090811" /translation="MSRHNCYLMLEDSTVFPGHAFGAKATVDGEVVFQTGMVGYPESM TDRSYRAQILVLTYPLIGNYGVPDFKEKDESGLPKHFEWLEGISVAALVVGEVCEQPS HWRSMQTLSQWMQSHGVPGIGGIDTRALTKKIRENGSILGRIVYECTERFDELTFSDP NIRNLVAECSVRKPLVFNETGSPRICAVDCGLKLNQIKCFVKRGARVELVPWNHDLDE STFDGLFISNGPGDPVVCKDTVGQIQKVLKSGKKPIFGICLGHQLLSTAIGCKTYKMK YGNRGHNLPCIHHGSGRCFMTSQNHGFAVDTDTLPVEWEPLFTNANDNTNEGIIHKHK PYFSVQFHPEHTAGPEDLELLFDVFLDAIKKPAIAGKSLSLRQQLTQRLMYSPKPESL LEKRPRKVLILGSGGLSIGQAGEFDYSGSQAIKAMKEEKIQTVLINPNIATVQTSKGL ADKCYFLPLTPEYVEQVIKAERPNGVLLTFGGQTALNCGVELERSGVFSKYNVKILGT PIKSIIETEDRKIFAERVNEIGEQVAPSEAVYSVEEALKAAQRIGYPVMARAAFSLGG LGSGFADSEEELEILARQALAHSSQLIIDKSLKGWKEVEYEVVRDAFDNCITVCNMEN LDPLGIHTGESIVVAPSQTLNNREYNMLRSTALKVIRHFGVVGECNIQYALNPHSEEY YIIEVNARLSRSSALASKATGYPLAYVAAKLSLGVPLPSIKNSVTGVTTACFEPSLDY CVVKIPRWDLAKFIRVSKNIGSSMKSVGEVMAIGRNFEEAFQKALRMVDNAVTGFDPH LQQVNVEELKEPTDKRPFVLAAALKADYSVDELHSLTKIDRWFLNKMQNIIQFYNQLE ESGSTLTIEQLWQAKRMGFSDKQLAEAIKVTELAIRQQRKEAGIVPFVKQIDTVAGEW PAATNYLYLTYNASENDIEFPGGYTIVVGSGVYRIGSSVEFDWCAVGCLRELRNLGKA TIMINYNPETVSTDYDMCDRLYFEEISFEVVMDIYELEHSEGIILSMGGQLPNNIAMD LHRQQAKVLGTSPESIDSAENRFKFSRMLDRKGILQPRWKELTNHESAIKFCEEVGYP CLVRPSYVLSGAAMNVAYSDQDLLTYLSAASLVSKEHPVVISKFLTEAKEIDVDAVAA DGEILCMAVSEHVENAGVHSGDATLVTPPQDLNAETLENIKRITSDLAGLLDVTGPFN MQIIAKNNELKVIECNVRVSRSFPFVSKTLNHDFVATATRAIMGLPVEPIDVLHGVGK VGVKVPQFSFSRLAGADVQLGVEMASTGEVACFGDNRYEAYLKGMMSTGFQIPKKAIL LSIGSFKHKMELLPSIRDLAKMGYKLYASMGTGDFYVEHGVKVECVQWTFDKNVTDDL SGGELMHLAEFLSQKQFDMIINLPMRGGGARRVSSFMTHGYRTRRLAVDYSIPLVTDV KCTKLLVESMRVTGRRPAMKTHTDCMTSRRMVTLPGFIDVHVHLREPGATHKEDFASG TAAALAGGVTMVCAMPNTNPSIVDRTSFSLFQELAKIGARCDYALFVGASDNNWQHIH ELAAQAAGLKMYLNDTFSTLKMTDMTIWEKHMQHWPKRAPIVCHAERQTMGAVILMAH LMDRAVHICHLARKEEIMIVKAAKEKGMRVTCEVCPHHLFLSTKDVPLIGSGRAEVRP VLCSPEDQKALWDNLEYIDVFATDHAPHTWEEKNSESPPPGFPGLESILPLLLQAVDE GRLALDDIKNKFYRNPKRIFSLPDQPNTYVEVDLDEEWVISKDFMHSKSKWTPFQGTK VKGKVHRVVLRGEVAFIDGEVLVQPGFGQNVRSQYNLAKPMEMLEIKTSCDNLENIKA LDRSTEFVSDSQANEAFSRLLSETPSKVHFSGDPSFLRPISPLPRIRCDSASNATLRE LIQKNSALNAPISPVAPTLLGRHVLSVDMFSKEQLNDIFNLAQMLKSRVSKDRPVDDL LKGKIMASVFYEVSTRTSCSFAAAMQRLGGRVIYMDETSSSVKKGETLEDSIAVMAGY SDVVVLRHPEPGAVGRAALHSRKPLINAGDGVGEHPTQALLDIFTIREEIGTVNGLTI TMVGDLKHGRTVHSLARLLTLYNVTIQYVSPDSLRMPNHIMDYLSSKGISQKTLDSLE DALPTTDVLYMTRIQRERFATEEEYERCCGKFIVTPKLMTRASRRTIVMHPLPRVFEI SKDFDSDPRAAYFRQAEYGMYIRMALLAMVVGCRN" polyA_site 7100 /gene="LOC106090811" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attgctcacc agtgccttta aactagtaca actccaacca acacaactct gcctcgaaaa 61 tgcttcactt tgatgtatgt aaaatcgagt taatttttgc accacccccc tggccataag 121 cattgccatc aatcatcatg tctcggcata attgctattt gatgcttgag gactcgactg 181 tttttccggg tcacgctttc ggtgccaagg ccactgttga tggcgaagtt gtgtttcaaa 241 ctggcatggt tggttatccc gagtccatga cagatcgttc atatcgtgcc cagattttag 301 ttcttaccta tcccttgata ggtaattatg gtgtacccga ttttaaggaa aaagatgaga 361 gtggtttgcc caaacacttc gaatggttgg agggtatttc ggtggctgcc ttagtagtgg 421 gtgaggtgtg tgagcagcct tcacattggc ggtccatgca gactttgtcg caatggatgc 481 agtcgcatgg agtgccgggc attggtggca tagatactcg tgccttgacc aagaagatac 541 gtgaaaatgg ttccattttg ggacgcattg tctacgagtg caccgagcgc ttcgatgagc 601 tgacattttc tgatcccaat ataagaaatt tggtggccga gtgttcggtt aggaagccgt 661 tggtgtttaa tgagacaggc tcgccacgca tctgtgcagt ggattgtggc ctcaaattga 721 atcaaatcaa atgttttgtg aagcgtggtg ctcgtgtgga gctggtgccc tggaatcatg 781 atttggatga gagcacattt gatggcctgt ttatttcgaa tggtcccggc gatccggtgg 841 tctgcaagga cactgtgggg cagatacaaa aggtcttgaa gtcgggcaag aagcccatat 901 ttggcatatg tctgggccat cagttgctgt ccacggccat cggttgtaag acctataaaa 961 tgaaatacgg caatcgtggt cacaatctgc cttgtatcca ccatggcagc gggcgctgtt 1021 ttatgacctc acaaaatcat ggatttgctg tggacaccga tacattgccc gtggaatggg 1081 agcctttgtt caccaatgcc aatgacaata ccaatgaggg tatcatccac aagcacaaac 1141 cctacttttc ggtgcaattc catcccgagc atactgctgg ccctgaggat ctggaattac 1201 ttttcgatgt cttcttggat gctatcaaaa aacctgccat agcgggaaaa tccttaagct 1261 tgcgccaaca gttgactcaa cgtctgatgt attcacccaa gcccgagtcc ctgttggaga 1321 agagacctcg aaaagttttg attttgggct ctggtggtct atccataggc caggcgggcg 1381 aatttgatta ttctggttct caggccatta aggccatgaa ggaggaaaaa atacaaacgg 1441 tgctcatcaa tcccaacata gccactgtgc agacttccaa gggcttggca gataagtgct 1501 acttcttgcc tttgacgcct gaatatgtgg agcaggtcat caaggccgaa agacccaatg 1561 gagtgctctt gaccttcgga ggacaaaccg ccttgaattg tggtgtggag ctggagcgct 1621 ctggggtgtt ttccaaatat aatgtcaaga ttttgggcac acccatcaaa tctattattg 1681 agaccgagga tcgtaagatt tttgccgagc gcgtcaatga aatcggagaa caggtggctc 1741 cctcggaagc ggtctattcg gtggaggagg ctttgaaggc ggcccagcgc ataggatatc 1801 ctgtaatggc cagagctgcc ttttccctgg gtgggctggg ttctggattt gccgacagcg 1861 aagaggagct cgagatcctg gcccgccagg ccttggccca ttccagccaa ttgattattg 1921 acaagtccct aaagggctgg aaggaggtgg agtatgaggt ggtgcgagat gcctttgaca 1981 attgcataac ggtgtgcaac atggagaatc tggatccttt gggcattcat acgggcgaaa 2041 gcattgtggt ggctccctca cagactctca acaacaggga gtacaatatg ctgcgttcca 2101 cagccctaaa ggtcatacgg cattttggtg tggtgggtga atgcaacatc cagtatgcct 2161 tgaatcccca ttccgaggag tactacatca ttgaagtgaa tgcccgtctg tcacgcagtt 2221 ctgccttggc cagcaaggcc actggatatc ccttggccta tgtggctgcc aagttgtcgt 2281 tgggtgtgcc cctgccctcc ataaagaact ctgtgacggg agtgaccact gcctgctttg 2341 aaccctcgct ggattattgt gtggtcaaga taccacgttg ggatttggcc aagtttatac 2401 gtgtcagcaa gaacataggc agctccatga agagtgtggg cgaggtcatg gccattggcc 2461 gcaatttcga ggaggctttt cagaaggccc tacgtatggt ggataatgca gtgacaggct 2521 ttgatcccca tctgcagcag gtaaatgtgg aagagctgaa ggaacccacc gacaagagac 2581 cctttgtcct ggccgccgcc ctcaaagccg actactcggt ggatgaattg cattcgctga 2641 ccaaaatcga tcgctggttc ctgaataaaa tgcagaacat cattcagttc tacaatcaat 2701 tggaggaatc tggcagcact ctaaccatag agcaactgtg gcaagccaaa cgtatgggtt 2761 tttccgacaa acaattggcg gaagccataa aggtcaccga attggccata cgccagcagc 2821 gcaaagaggc cggcatcgta ccatttgtca agcaaatcga tactgtggcc ggggagtggc 2881 cagcagccac caattacctc tatctcacct ataatgcgtc ggaaaatgac atcgagtttc 2941 ctggaggcta caccatagtg gtgggttctg gtgtctatcg cattggctcc tcggtggaat 3001 ttgattggtg tgccgtgggc tgtctgagag agctgcgaaa tcttggcaag gctaccatca 3061 tgatcaacta caacccggag acggtgtcca ccgactatga tatgtgtgac cgtttgtatt 3121 tcgaggagat cagttttgaa gtagtcatgg acatctatga actggagcat tccgagggca 3181 tcatcctctc tatgggtggt cagctgccca ataatatagc catggactta catcgccagc 3241 aggccaaggt gctgggcacc tctcccgaat ccatagattc ggcagagaat cgttttaaat 3301 tctcccgcat gttggatcgc aaaggcattc tacagcctcg ctggaaagag ctaaccaatc 3361 atgaaagtgc catcaaattc tgtgaggaag tgggttatcc ctgtcttgtc cggccttcct 3421 atgttctctc cggggcagcc atgaatgtgg cctattcgga tcaagatctg ctgacttatc 3481 tcagtgctgc ctcgctggtt agtaaagaac atccggtggt tatatcaaaa ttccttaccg 3541 aagccaagga aatcgatgtg gatgctgtgg ccgcggatgg tgaaatttta tgcatggccg 3601 tttcggagca tgtggagaat gccggcgttc actcgggcga tgctaccttg gtgacaccac 3661 cccaggattt gaacgccgaa actttggaga atatcaagag aataaccagt gatctggctg 3721 gcctcttaga tgtaacgggt ccattcaata tgcagattat agccaaaaat aatgaactca 3781 aggttattga gtgtaatgtt cgtgtttccc gctccttccc ctttgtctcc aagacgttga 3841 accatgattt tgtggccact gccaccaggg ccattatggg cttgccagtg gagccgatag 3901 acgttttaca tggcgtaggc aaggtgggcg tcaaagtgcc ccaattcagt ttttcgcgcc 3961 tggccggtgc cgatgtgcag ttgggtgtag aaatggcctc caccggagag gtggcctgct 4021 ttggtgataa tcgttacgag gcctatttga agggtatgat gtccactggg ttccagatac 4081 ccaaaaaagc catacttttg tctattggaa gtttcaagca taaaatggaa cttttacctt 4141 ccattcgaga tctggctaag atgggctata aactgtatgc ttccatgggt acgggagatt 4201 tttatgtgga acatggagta aaggtggaat gcgttcagtg gactttcgat aaaaatgtta 4261 ccgacgatct tagtggaggt gagcttatgc acttggccga gttcttatcc cagaagcaat 4321 tcgatatgat aatcaatcta cccatgagag gagggggagc tagaagagtt tcctccttca 4381 tgacccatgg ctatcgcaca cgacgccttg ccgtcgatta ctccattccc ctggtcaccg 4441 atgtgaagtg cactaaacta ttggtagaat ctatgcgagt gactggtcgc aggcctgcca 4501 tgaagaccca tacagattgc atgacctcaa ggcgaatggt aacgctgcca ggctttatag 4561 atgttcatgt acatctccga gaaccaggag ccacacacaa agaggacttt gccagtggca 4621 cagctgccgc tttagctgga ggtgttacca tggtttgtgc catgcccaac accaatccct 4681 ccatagtgga tcgtaccagc ttttcactgt tccaagaatt ggccaagatt ggggcacgct 4741 gcgattatgc cctctttgtg ggagcatcgg acaacaattg gcagcatatc catgagttgg 4801 ccgcccaggc ggcaggatta aagatgtatt tgaatgacac tttcagtact ttgaaaatga 4861 ccgatatgac catttgggag aagcacatgc agcattggcc gaagcgtgct cccattgttt 4921 gccacgccga aagacagacc atgggtgctg tgatactaat ggcccatctc atggatcgag 4981 ctgtccacat ctgccatttg gctcgcaagg aggagataat gattgtcaag gcagccaagg 5041 agaagggcat gcgagtgact tgcgaggtgt gtccccatca tttgtttttg tccaccaagg 5101 atgtaccgct catagggtca gggcgagctg aagtaaggcc cgtcttatgt tctcccgaag 5161 atcaaaaggc cttgtgggat aatctggagt acatagacgt tttcgccacg gatcatgctc 5221 cccacacttg ggaagagaaa aattcagaga gtcctcctcc aggattccca ggattggaat 5281 ctatactgcc tttgctgttg caggcagtgg atgagggacg tctagcgctg gatgacatca 5341 aaaataaatt ctatcgcaat cccaagagga tattcagttt gccagatcaa cccaatacct 5401 atgtggaggt ggatttggat gaggagtggg tgatatcgaa agactttatg cactccaagt 5461 ccaaatggac gcctttccag ggcaccaagg tcaagggcaa ggtgcatcgg gtggtattgc 5521 gcggcgaagt ggcctttata gacggtgagg tgttggtgca acccggcttt ggacaaaatg 5581 tgcgcagcca atataatctc gccaagccca tggaaatgtt ggagattaag acctcgtgcg 5641 ataacttgga aaatataaaa gccttggatc gcagcactga gttcgtctct gattcacagg 5701 ccaatgaggc cttctctaga ttgctctccg agactccttc gaaggttcac ttttcgggag 5761 atcccagctt tttgcgtccc atatctccat tgcctcgcat tcgttgtgat tcggccagca 5821 atgccacact gcgagaactt atacagaaaa attctgcctt aaatgctccc atttcaccag 5881 tggcgcccac tttgctggga cgccatgtct tgtcggtgga tatgtttagc aaagagcaat 5941 tgaatgatat cttcaatttg gcccaaatgt tgaagagtcg agtgtccaag gatcgccctg 6001 tcgacgattt gctgaagggt aaaataatgg cctccgtctt ctatgaggtc agcaccagaa 6061 cttcatgcag ctttgcagca gccatgcaac gcttgggagg acgtgtcatt tatatggatg 6121 agacaagttc ctcggtgaaa aagggcgaga cattggagga cagcattgcc gttatggcag 6181 gatattccga tgtggtggtg ctaaggcatc ccgagccggg cgcagtgggt cgcgccgctt 6241 tacactcacg caaacccctc atcaatgccg gcgatggtgt gggcgaacac cccacacagg 6301 ccttacttga catctttacc atacgcgaag agataggcac tgtcaatggt ttgactatta 6361 ccatggttgg tgatttaaaa catggccgta ctgtacattc tttggcccgc ctattgactt 6421 tgtataatgt taccatacaa tatgtcagcc cggatagttt acgcatgcct aatcacataa 6481 tggattatct atcatcaaag ggcattagcc aaaagaccct ggatagtcta gaggatgctt 6541 tgcccaccac agatgttttg tatatgacac gcatacaaag agaacgcttt gccaccgagg 6601 aggaatatga aaggtgctgc ggcaaattca tagtcacacc gaaactaatg acacgcgcca 6661 gtcgccgcac catagtcatg catcctttgc ctcgtgtctt tgagataagc aaagatttcg 6721 attcggatcc tagagcagct tacttccgtc aagcggaata tggcatgtac attcgcatgg 6781 cccttttggc catggtggtg ggttgtcgca actgatatga agcaccacaa acgccgccgc 6841 cgccggcgcc aaatattgca gaagaaggac gactgtgact ttgatgtttt tcagaaacca 6901 acttttccat taaccgaaaa caggacacat gaatacactt atgaagtgtg acatccagtt 6961 cattttaacc attttttcta tacaattttt atatgaatct aacctacata ctaaacctaa 7021 cctacatact aatctaacct actatactaa agttagttga taagataaaa cgtcaaaaaa 7081 tttttgatac gctgaaataa