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LOCUS XM_059366646 7101 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_059366646 VERSION XM_059366646.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7101 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7101 /gene="LOC106090811" /note="CAD protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1404 Proteins" /db_xref="GeneID:106090811" CDS 139..6816 /gene="LOC106090811" /codon_start=1 /product="CAD protein" /protein_id="XP_059222629.1" /db_xref="GeneID:106090811" /translation="MSRHNCYLMLEDSTVFPGHAFGAKATVDGEVVFQTGMVGYPESM TDRSYRAQILVLTYPLIGNYGVPDFKEKDESGLPKHFEWLEGISVAALVVGEVCEQPS HWRSMQTLSQWMQSHGVPGIGGIDTRALTKKIRENGSILGRIVYECTERFDELTFSDP NIRNLVAECSVRKPLVFNETGSPRICAVDCGLKLNQIKCFVKRGARVELVPWNHDLDE STFDGLFISNGPGDPVVCKDTVGQIQKVLKSGKKPIFGICLGHQLLSTAIGCKTYKMK YGNRGHNLPCIHHGSGRCFMTSQNHGFAVDTDTLPVEWEPLFTNANDNTNEGIIHKHK PYFSVQFHPEHTAGPEDLELLFDVFLDAIKKPAIAGKSLSLRQQLTQRLMYSPKPESL LEKRPRKVLILGSGGLSIGQAGEFDYSGSQAIKAMKEEKIQTVLINPNIATVQTSKGL ADKCYFLPLTPEYVEQVIKAERPNGVLLTFGGQTALNCGVELERSGVFSKYNVKILGT PIKSIIETEDRKIFAERVNEIGEQVAPSEAVYSVEEALKAAQRIGYPVMARAAFSLGG LGSGFADSEEELEILARQALAHSSQLIIDKSLKGWKEVEYEVVRDAFDNCITVCNMEN LDPLGIHTGESIVVAPSQTLNNREYNMLRSTALKVIRHFGVVGECNIQYALNPHSEEY YIIEVNARLSRSSALASKATGYPLAYVAAKLSLGVPLPSIKNSVTGVTTACFEPSLDY CVVKIPRWDLAKFIRVSKNIGSSMKSVGEVMAIGRNFEEAFQKALRMVDNAVTGFDPH LQQVNVEELKEPTDKRPFVLAAALKADYSVDELHSLTKIDRWFLNKMQNIIQFYNQLE ESGSTLTIEQLWQAKRMGFSDKQLAEAIKVTELAIRQQRKEAGIVPFVKQIDTVAGEW PAATNYLYLTYNASENDIEFPGGYTIVVGSGVYRIGSSVEFDWCAVGCLRELRNLGKA TIMINYNPETVSTDYDMCDRLYFEEISFEVVMDIYELEHSEGIILSMGGQLPNNIAMD LHRQQAKVLGTSPESIDSAENRFKFSRMLDRKGILQPRWKELTNHESAIKFCEEVGYP CLVRPSYVLSGAAMNVAYSDQDLLTYLSAASLVSKEHPVVISKFLTEAKEIDVDAVAA DGEILCMAVSEHVENAGVHSGDATLVTPPQDLNAETLENIKRITSDLAGLLDVTGPFN MQIIAKNNELKVIECNVRVSRSFPFVSKTLNHDFVATATRAIMGLPVEPIDVLHGVGK VGVKVPQFSFSRLAGADVQLGVEMASTGEVACFGDNRYEAYLKGMMSTGFQIPKKAIL LSIGSFKHKMELLPSIRDLAKMGYKLYASMGTGDFYVEHGVKVECVQWTFDKNVTDDL SGGELMHLAEFLSQKQFDMIINLPMRGGGARRVSSFMTHGYRTRRLAVDYSIPLVTDV KCTKLLVESMRVTGRRPAMKTHTDCMTSRRMVTLPGFIDVHVHLREPGATHKEDFASG TAAALAGGVTMVCAMPNTNPSIVDRTSFSLFQELAKIGARCDYALFVGASDNNWQHIH ELAAQAAGLKMYLNDTFSTLKMTDMTIWEKHMQHWPKRAPIVCHAERQTMGAVILMAH LMDRAVHICHLARKEEIMIVKAAKEKGMRVTCEVCPHHLFLSTKDVPLIGSGRAEVRP VLCSPEDQKALWDNLEYIDVFATDHAPHTWEEKNSESPPPGFPGLESILPLLLQAVDE GRLALDDIKNKFYRNPKRIFSLPDQPNTYVEVDLDEEWVISKDFMHSKSKWTPFQGTK VKGKVHRVVLRGEVAFIDGEVLVQPGFGQNVRSQYNLAKPMEMLEIKTSCDNLENIKA LDRSTEFVSDSQANEAFSRLLSETPSKVHFSGDPSFLRPISPLPRIRCDSASNATLRE LIQKNSALNAPISPVAPTLLGRHVLSVDMFSKEQLNDIFNLAQMLKSRVSKDRPVDDL LKGKIMASVFYEVSTRTSCSFAAAMQRLGGRVIYMDETSSSVKKGETLEDSIAVMAGY SDVVVLRHPEPGAVGRAALHSRKPLINAGDGVGEHPTQALLDIFTIREEIGTVNGLTI TMVGDLKHGRTVHSLARLLTLYNVTIQYVSPDSLRMPNHIMDYLSSKGISQKTLDSLE DALPTTDVLYMTRIQRERFATEEEYERCCGKFIVTPKLMTRASRRTIVMHPLPRVFEI SKDFDSDPRAAYFRQAEYGMYIRMALLAMVVGCRN" polyA_site 7101 /gene="LOC106090811" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcggccgcaa ggaaaggtta ttttgttttc gttttacggt ttaactgcgt tacattacaa 61 aagccacgtg gttttaaggt taataaaaaa ttaatttttg caccaccccc ctggccataa 121 gcattgccat caatcatcat gtctcggcat aattgctatt tgatgcttga ggactcgact 181 gtttttccgg gtcacgcttt cggtgccaag gccactgttg atggcgaagt tgtgtttcaa 241 actggcatgg ttggttatcc cgagtccatg acagatcgtt catatcgtgc ccagatttta 301 gttcttacct atcccttgat aggtaattat ggtgtacccg attttaagga aaaagatgag 361 agtggtttgc ccaaacactt cgaatggttg gagggtattt cggtggctgc cttagtagtg 421 ggtgaggtgt gtgagcagcc ttcacattgg cggtccatgc agactttgtc gcaatggatg 481 cagtcgcatg gagtgccggg cattggtggc atagatactc gtgccttgac caagaagata 541 cgtgaaaatg gttccatttt gggacgcatt gtctacgagt gcaccgagcg cttcgatgag 601 ctgacatttt ctgatcccaa tataagaaat ttggtggccg agtgttcggt taggaagccg 661 ttggtgttta atgagacagg ctcgccacgc atctgtgcag tggattgtgg cctcaaattg 721 aatcaaatca aatgttttgt gaagcgtggt gctcgtgtgg agctggtgcc ctggaatcat 781 gatttggatg agagcacatt tgatggcctg tttatttcga atggtcccgg cgatccggtg 841 gtctgcaagg acactgtggg gcagatacaa aaggtcttga agtcgggcaa gaagcccata 901 tttggcatat gtctgggcca tcagttgctg tccacggcca tcggttgtaa gacctataaa 961 atgaaatacg gcaatcgtgg tcacaatctg ccttgtatcc accatggcag cgggcgctgt 1021 tttatgacct cacaaaatca tggatttgct gtggacaccg atacattgcc cgtggaatgg 1081 gagcctttgt tcaccaatgc caatgacaat accaatgagg gtatcatcca caagcacaaa 1141 ccctactttt cggtgcaatt ccatcccgag catactgctg gccctgagga tctggaatta 1201 cttttcgatg tcttcttgga tgctatcaaa aaacctgcca tagcgggaaa atccttaagc 1261 ttgcgccaac agttgactca acgtctgatg tattcaccca agcccgagtc cctgttggag 1321 aagagacctc gaaaagtttt gattttgggc tctggtggtc tatccatagg ccaggcgggc 1381 gaatttgatt attctggttc tcaggccatt aaggccatga aggaggaaaa aatacaaacg 1441 gtgctcatca atcccaacat agccactgtg cagacttcca agggcttggc agataagtgc 1501 tacttcttgc ctttgacgcc tgaatatgtg gagcaggtca tcaaggccga aagacccaat 1561 ggagtgctct tgaccttcgg aggacaaacc gccttgaatt gtggtgtgga gctggagcgc 1621 tctggggtgt tttccaaata taatgtcaag attttgggca cacccatcaa atctattatt 1681 gagaccgagg atcgtaagat ttttgccgag cgcgtcaatg aaatcggaga acaggtggct 1741 ccctcggaag cggtctattc ggtggaggag gctttgaagg cggcccagcg cataggatat 1801 cctgtaatgg ccagagctgc cttttccctg ggtgggctgg gttctggatt tgccgacagc 1861 gaagaggagc tcgagatcct ggcccgccag gccttggccc attccagcca attgattatt 1921 gacaagtccc taaagggctg gaaggaggtg gagtatgagg tggtgcgaga tgcctttgac 1981 aattgcataa cggtgtgcaa catggagaat ctggatcctt tgggcattca tacgggcgaa 2041 agcattgtgg tggctccctc acagactctc aacaacaggg agtacaatat gctgcgttcc 2101 acagccctaa aggtcatacg gcattttggt gtggtgggtg aatgcaacat ccagtatgcc 2161 ttgaatcccc attccgagga gtactacatc attgaagtga atgcccgtct gtcacgcagt 2221 tctgccttgg ccagcaaggc cactggatat cccttggcct atgtggctgc caagttgtcg 2281 ttgggtgtgc ccctgccctc cataaagaac tctgtgacgg gagtgaccac tgcctgcttt 2341 gaaccctcgc tggattattg tgtggtcaag ataccacgtt gggatttggc caagtttata 2401 cgtgtcagca agaacatagg cagctccatg aagagtgtgg gcgaggtcat ggccattggc 2461 cgcaatttcg aggaggcttt tcagaaggcc ctacgtatgg tggataatgc agtgacaggc 2521 tttgatcccc atctgcagca ggtaaatgtg gaagagctga aggaacccac cgacaagaga 2581 ccctttgtcc tggccgccgc cctcaaagcc gactactcgg tggatgaatt gcattcgctg 2641 accaaaatcg atcgctggtt cctgaataaa atgcagaaca tcattcagtt ctacaatcaa 2701 ttggaggaat ctggcagcac tctaaccata gagcaactgt ggcaagccaa acgtatgggt 2761 ttttccgaca aacaattggc ggaagccata aaggtcaccg aattggccat acgccagcag 2821 cgcaaagagg ccggcatcgt accatttgtc aagcaaatcg atactgtggc cggggagtgg 2881 ccagcagcca ccaattacct ctatctcacc tataatgcgt cggaaaatga catcgagttt 2941 cctggaggct acaccatagt ggtgggttct ggtgtctatc gcattggctc ctcggtggaa 3001 tttgattggt gtgccgtggg ctgtctgaga gagctgcgaa atcttggcaa ggctaccatc 3061 atgatcaact acaacccgga gacggtgtcc accgactatg atatgtgtga ccgtttgtat 3121 ttcgaggaga tcagttttga agtagtcatg gacatctatg aactggagca ttccgagggc 3181 atcatcctct ctatgggtgg tcagctgccc aataatatag ccatggactt acatcgccag 3241 caggccaagg tgctgggcac ctctcccgaa tccatagatt cggcagagaa tcgttttaaa 3301 ttctcccgca tgttggatcg caaaggcatt ctacagcctc gctggaaaga gctaaccaat 3361 catgaaagtg ccatcaaatt ctgtgaggaa gtgggttatc cctgtcttgt ccggccttcc 3421 tatgttctct ccggggcagc catgaatgtg gcctattcgg atcaagatct gctgacttat 3481 ctcagtgctg cctcgctggt tagtaaagaa catccggtgg ttatatcaaa attccttacc 3541 gaagccaagg aaatcgatgt ggatgctgtg gccgcggatg gtgaaatttt atgcatggcc 3601 gtttcggagc atgtggagaa tgccggcgtt cactcgggcg atgctacctt ggtgacacca 3661 ccccaggatt tgaacgccga aactttggag aatatcaaga gaataaccag tgatctggct 3721 ggcctcttag atgtaacggg tccattcaat atgcagatta tagccaaaaa taatgaactc 3781 aaggttattg agtgtaatgt tcgtgtttcc cgctccttcc cctttgtctc caagacgttg 3841 aaccatgatt ttgtggccac tgccaccagg gccattatgg gcttgccagt ggagccgata 3901 gacgttttac atggcgtagg caaggtgggc gtcaaagtgc cccaattcag tttttcgcgc 3961 ctggccggtg ccgatgtgca gttgggtgta gaaatggcct ccaccggaga ggtggcctgc 4021 tttggtgata atcgttacga ggcctatttg aagggtatga tgtccactgg gttccagata 4081 cccaaaaaag ccatactttt gtctattgga agtttcaagc ataaaatgga acttttacct 4141 tccattcgag atctggctaa gatgggctat aaactgtatg cttccatggg tacgggagat 4201 ttttatgtgg aacatggagt aaaggtggaa tgcgttcagt ggactttcga taaaaatgtt 4261 accgacgatc ttagtggagg tgagcttatg cacttggccg agttcttatc ccagaagcaa 4321 ttcgatatga taatcaatct acccatgaga ggagggggag ctagaagagt ttcctccttc 4381 atgacccatg gctatcgcac acgacgcctt gccgtcgatt actccattcc cctggtcacc 4441 gatgtgaagt gcactaaact attggtagaa tctatgcgag tgactggtcg caggcctgcc 4501 atgaagaccc atacagattg catgacctca aggcgaatgg taacgctgcc aggctttata 4561 gatgttcatg tacatctccg agaaccagga gccacacaca aagaggactt tgccagtggc 4621 acagctgccg ctttagctgg aggtgttacc atggtttgtg ccatgcccaa caccaatccc 4681 tccatagtgg atcgtaccag cttttcactg ttccaagaat tggccaagat tggggcacgc 4741 tgcgattatg ccctctttgt gggagcatcg gacaacaatt ggcagcatat ccatgagttg 4801 gccgcccagg cggcaggatt aaagatgtat ttgaatgaca ctttcagtac tttgaaaatg 4861 accgatatga ccatttggga gaagcacatg cagcattggc cgaagcgtgc tcccattgtt 4921 tgccacgccg aaagacagac catgggtgct gtgatactaa tggcccatct catggatcga 4981 gctgtccaca tctgccattt ggctcgcaag gaggagataa tgattgtcaa ggcagccaag 5041 gagaagggca tgcgagtgac ttgcgaggtg tgtccccatc atttgttttt gtccaccaag 5101 gatgtaccgc tcatagggtc agggcgagct gaagtaaggc ccgtcttatg ttctcccgaa 5161 gatcaaaagg ccttgtggga taatctggag tacatagacg ttttcgccac ggatcatgct 5221 ccccacactt gggaagagaa aaattcagag agtcctcctc caggattccc aggattggaa 5281 tctatactgc ctttgctgtt gcaggcagtg gatgagggac gtctagcgct ggatgacatc 5341 aaaaataaat tctatcgcaa tcccaagagg atattcagtt tgccagatca acccaatacc 5401 tatgtggagg tggatttgga tgaggagtgg gtgatatcga aagactttat gcactccaag 5461 tccaaatgga cgcctttcca gggcaccaag gtcaagggca aggtgcatcg ggtggtattg 5521 cgcggcgaag tggcctttat agacggtgag gtgttggtgc aacccggctt tggacaaaat 5581 gtgcgcagcc aatataatct cgccaagccc atggaaatgt tggagattaa gacctcgtgc 5641 gataacttgg aaaatataaa agccttggat cgcagcactg agttcgtctc tgattcacag 5701 gccaatgagg ccttctctag attgctctcc gagactcctt cgaaggttca cttttcggga 5761 gatcccagct ttttgcgtcc catatctcca ttgcctcgca ttcgttgtga ttcggccagc 5821 aatgccacac tgcgagaact tatacagaaa aattctgcct taaatgctcc catttcacca 5881 gtggcgccca ctttgctggg acgccatgtc ttgtcggtgg atatgtttag caaagagcaa 5941 ttgaatgata tcttcaattt ggcccaaatg ttgaagagtc gagtgtccaa ggatcgccct 6001 gtcgacgatt tgctgaaggg taaaataatg gcctccgtct tctatgaggt cagcaccaga 6061 acttcatgca gctttgcagc agccatgcaa cgcttgggag gacgtgtcat ttatatggat 6121 gagacaagtt cctcggtgaa aaagggcgag acattggagg acagcattgc cgttatggca 6181 ggatattccg atgtggtggt gctaaggcat cccgagccgg gcgcagtggg tcgcgccgct 6241 ttacactcac gcaaacccct catcaatgcc ggcgatggtg tgggcgaaca ccccacacag 6301 gccttacttg acatctttac catacgcgaa gagataggca ctgtcaatgg tttgactatt 6361 accatggttg gtgatttaaa acatggccgt actgtacatt ctttggcccg cctattgact 6421 ttgtataatg ttaccataca atatgtcagc ccggatagtt tacgcatgcc taatcacata 6481 atggattatc tatcatcaaa gggcattagc caaaagaccc tggatagtct agaggatgct 6541 ttgcccacca cagatgtttt gtatatgaca cgcatacaaa gagaacgctt tgccaccgag 6601 gaggaatatg aaaggtgctg cggcaaattc atagtcacac cgaaactaat gacacgcgcc 6661 agtcgccgca ccatagtcat gcatcctttg cctcgtgtct ttgagataag caaagatttc 6721 gattcggatc ctagagcagc ttacttccgt caagcggaat atggcatgta cattcgcatg 6781 gcccttttgg ccatggtggt gggttgtcgc aactgatatg aagcaccaca aacgccgccg 6841 ccgccggcgc caaatattgc agaagaagga cgactgtgac tttgatgttt ttcagaaacc 6901 aacttttcca ttaaccgaaa acaggacaca tgaatacact tatgaagtgt gacatccagt 6961 tcattttaac cattttttct atacaatttt tatatgaatc taacctacat actaaaccta 7021 acctacatac taatctaacc tactatacta aagttagttg ataagataaa acgtcaaaaa 7081 atttttgata cgctgaaata a