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LOCUS XM_059366465 4418 bp mRNA linear INV 02-SEP-2023 Sog (LOC106088778), transcript variant X5, mRNA. ACCESSION XM_059366465 VERSION XM_059366465.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4418 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4418 /gene="LOC106088778" /note="dorsal-ventral patterning protein Sog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106088778" CDS 361..3393 /gene="LOC106088778" /codon_start=1 /product="dorsal-ventral patterning protein Sog" /protein_id="XP_059222448.1" /db_xref="GeneID:106088778" /translation="MSRIYTTSQSRLCELTSVMFKILIFSLVCLSQTTLAYGRKHSPL IVDEADGNRRNNRPAVSECQFGKTLRELGSTWYADLGPPFGVMYCIKCECVAVPKKRR IVARVQCRNIKNECPPALCDDPVLLPGKCCKTCPGDKNDTMALDVPAHVEEEERNMKH FAALLTGRTSHFLKGEEMKSMYTTHNPHNIVATGRFMFHKKNLYYSFYTSSKVNRPRA IQFVDDSGTILEEHQLQLPAGPQSIYQNVTGKICGVWRRVPRDYKRLLRDERLHVVLL WGGNKFQTELALAGRIGKYTALQSELFSALMEPAPGSKSDIMSGSGGTAIVSTSSGAA SSMHLTLVFNGVFSPDDYVDSPVSIRIESPDRREVVLDEVQKVRKPSSEVNVLEISSP ISIQNLRLMSRGKLLLSVESKKNPNLRIQGHIVTRTTCEIFQTLLAPHNVEAKTRSSG LAWVFLNTDGSLSYNIETDQVNARDHPEISLIEDMGKRKAVLEDLTPSFNFNQAIGSV DKLGPKVVESLYAGDLGINIAVEHETSLIRGRLVPRPVADARDSAEPILLKRSEMSTI APHHAMGMAWLSIDNECNLHYELTLSGFQPHVQDLQIFLEEKPIEAIGAPVTRKLLEE FSGSYMEGFVLGMPSNELVKLESSVCYLEVHSKEKNELLLRGKLKSTKVPAHCFPIYT DNNVPNVYLPGDRNDDLLITADTKCYHSGRFYDETEQWRSTEDTCQMCACQRGHATCE PIKCPVVHCKLNEELIQEEGECCAMCVPQSLNGKEVAVAAGLSEAAGGAEHNKRGCRL GDQFHVAGATWHPFLPPNGFDTCTTCTCDALTLEIRCPRMVCPPLQCKEKEAYRPDKK ACCKVCPEGKMSSSRVDKMGPSNPNVLQDQASLKPNVRTSEEILSQGGCKVVNKLYEN GQEWHPVLASHGEQKCIKCRCKDSKVNCDRKRCSRSTCQQARVSSKRKIYEKPGSEPA VDECCSTQCKRPRRHHRRTQQQQQQGEQQQTNKRGVSS" polyA_site 4418 /gene="LOC106088778" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcagcgagta acagagtcga tcgtgtgccc aacagcagca taatagcaag caagaaaaat 61 tttcaacatt tttacgcaag agagaacgat tttgtacaat gtaaaccaaa caacatctac 121 aacaacaaca acaacaaaga aaaaatacga atataaagta acaaatcgac aattttgcaa 181 agtagcaaca gaaaaaaaga agagtatata aaaaaagttt cccaacaaag aaaaaagcat 241 aaaaatttaa gtgttttttt tttcaaatat aaaaaataat aacaacaaca tcaataaata 301 acgcataaaa ggaaaacttc ccaacaccca ttcatcaagg aaaaaacaaa actccaaaaa 361 atgtccagaa tttatacaac atcacagagt cgcctttgcg agttaacttc agtcatgttc 421 aagattttaa tcttcagcct ggtgtgcctt agccaaacaa ctttggctta tggccgcaaa 481 cattcacctt taattgtgga cgaagccgat ggcaatcgaa ggaacaatcg accagcggta 541 tccgaatgcc aatttggcaa aactttacga gaattaggct cgacctggta tgctgatttg 601 ggaccaccgt ttggcgtcat gtattgcata aaatgcgaat gtgtggcggt tcccaaaaaa 661 cgccgcattg tggctcgcgt tcaatgtcga aatattaaaa acgaatgccc cccagccttg 721 tgcgatgatc ctgtcttgtt gcccggtaaa tgttgcaaaa catgtcccgg tgataaaaat 781 gacactatgg ccttagatgt accggcacat gtcgaagaag aggagcgcaa tatgaaacat 841 ttcgctgctc tcctcacagg tcgcacttcg cattttctga aaggtgaaga aatgaaatcc 901 atgtacacca ctcacaatcc ccacaacatt gtggccactg gccgcttcat gttccacaaa 961 aagaatcttt actattcctt ctatacctcg tccaaggtca atcgtccacg tgccatacaa 1021 tttgtcgatg actcgggcac tattttggaa gaacatcaat tgcaattgcc cgccggtccc 1081 caatcgatct atcaaaatgt cactggcaaa atctgtggtg tatggcgtcg tgtaccgcgt 1141 gattataagc gtctattgcg tgatgagcgc ctgcatgtgg tgctgctctg gggtggcaac 1201 aaattccaaa ccgaattggc tttggccggc agaattggca aatacaccgc cttgcaatcg 1261 gaattgttta gtgccctaat ggagcctgct cctggttcga aatcggatat aatgtctggt 1321 tccggtggca ccgccattgt ctccaccagc agtggtgctg cttcctccat gcatttgact 1381 ttggtcttca atggagtctt ctcgcccgat gattatgttg actctcccgt cagcattcgc 1441 attgaatcac ctgatcgccg cgaagtggtt ctagatgagg tgcagaaggt gcgcaaaccc 1501 tcttcggagg taaatgtcct ggaaatatct tctcccattt ccatacagaa cttgcgtttg 1561 atgtcgcgtg gcaaattgct tttaagcgtc gaatcgaaga agaaccccaa tttacgcata 1621 caaggacaca ttgttacccg taccacctgc gagattttcc aaaccctttt ggccccccac 1681 aatgtggagg ccaaaacccg gagcagtggt ttagcctggg tatttttgaa cacagatggc 1741 tccttgtcct acaacattga gactgaccag gtaaatgcca gagatcatcc tgagatcagt 1801 ttgatagagg atatgggcaa gcgcaaagcc gtcttggagg acttgacacc cagcttcaac 1861 ttcaatcaag ccattggctc tgtggacaaa ctgggcccca aggtggtcga gtctttgtat 1921 gcgggcgatt tgggtatcaa cattgcggtg gaacatgaaa ccagcctgat aagaggccgt 1981 ttggtgcccc gacctgtggc agatgcccgc gattcagccg aacccatact gttgaaacgt 2041 tctgagatgt ctaccattgc cccccatcac gccatgggca tggcttggct atccatagac 2101 aatgaatgca atctgcacta tgaactaacc ctgagtggct tccagcccca tgtgcaggat 2161 ttgcaaatct ttttggaaga gaaacccatt gaggccatag gtgctccagt cactcgcaaa 2221 cttttggaag aattttccgg ctcctacatg gagggctttg ttttgggcat gccctccaat 2281 gaactggtaa agctggaatc aagtgtctgc tacttggaag tgcattccaa ggagaagaat 2341 gaattgctgc tgcgcggcaa gttgaagtcg acaaaagtcc cagcccattg cttccccata 2401 tacacggaca acaatgtgcc caatgtttac ctgcccggcg atcgtaatga tgacctttta 2461 ataacggccg acaccaaatg ttatcactcg gggcgttttt acgatgaaac cgaacaatgg 2521 cgcagcacgg aagatacctg ccagatgtgt gcctgccagc ggggtcatgc tacttgcgag 2581 cccatcaaat gtcctgtggt gcactgcaaa ctgaatgaag agctgatcca ggaagaaggt 2641 gaatgctgtg caatgtgtgt gccacaaagt ctcaatggca aggaggtggc agtagccgca 2701 ggccttagcg aagcggcagg cggagcagag cataataaac gtggttgtcg cctaggcgat 2761 caattccatg tggctggggc cacctggcat cccttcctgc cgcccaatgg cttcgatacc 2821 tgcaccacct gtacttgtga tgccttgact ttggaaatca gatgtccccg catggtttgc 2881 ccccccttgc agtgcaagga aaaggaagcc tatcgtccag acaagaaggc gtgttgcaaa 2941 gtttgccccg aaggcaaaat gtccagcagc agagtagaca aaatgggtcc ctccaatccc 3001 aatgttttgc aagatcaggc ctcgctcaaa cccaatgtga gaaccagtga agagatccta 3061 tcacaaggag gctgcaaggt ggtcaacaag ctctatgaaa atggccaaga atggcatcct 3121 gttttggcct cgcatgggga gcaaaaatgc atcaaatgca ggtgcaagga ctccaaggtc 3181 aattgtgatc gcaaacgttg ctcacgatcc acctgccagc aggccagagt ctcatcgaaa 3241 cgcaaaatct atgagaaacc aggctccgag cctgcagtgg acgagtgttg ctccacccaa 3301 tgcaaaaggc caaggagaca tcaccgaaga acccagcagc agcagcaaca gggcgaacaa 3361 caacagacaa acaaacgcgg tgtcagcagc tgaatccttt tctactctca ggcaaaataa 3421 aaaagctcta atataatttg tagagaggct gagtatgaga gtacctatgc tagcaataga 3481 gaaaacaatc acatcaacaa accaagcaac caatacaccg agagaagaca caccaacagt 3541 tcttacttag cagagagaag gaaggaaaag ctcgaatgcc gaagaaaatt cgaatgaaac 3601 ttgatcttcg attttctttg ccatcaaaac aaaaaagaag aaagcccagc aaacaatttt 3661 ctaaaccaac caccaaccaa acaacccagc accaacactg agagaaatcc taattgcaga 3721 acagcttatt tgcaagcaac aactgaaacc ccgagaaaag ctttagtttt acagagagag 3781 agagagagaa aaagcttaaa tgtattacaa agaaaacaaa acaaaaaaaa accaacacta 3841 ctataaaatg caaaaaaacg agagtacact tacaaaaaat accagtgcag tagacgataa 3901 actatacaaa aaaaaatatt atttatttct tcttgttttt gttttacaaa agaaaaaaaa 3961 attcaaaatc cttctctcac tttatctcac tctctctctc tctcgctctg cctccttcat 4021 gctttacatg tcatagaaaa gtttcaatgt ctttgtgagt acggctattg cagttgttta 4081 gtcaccgaga aagtgttgcg agagagagag agggagagcg cgcgatgcag agaatgataa 4141 aatgagagat gatggtgtag acgagtaacg caagagaatg gtagataagg cgaagaaaaa 4201 taatattttt gcaaatattt atagaaacac atcccaaaag tttcgactga ttgactgaat 4261 ggcaacttta gttttaaggc ttaagaaata tacatacata catgcataca tacatacata 4321 cattgatgaa taatacatgc atacatgcta tatgcataca tacatacata ctttattatt 4381 atgaaatgaa gaaaagaaaa atattttact taaataca