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LOCUS XM_059366464 4492 bp mRNA linear INV 02-SEP-2023 Sog (LOC106088778), transcript variant X4, mRNA. ACCESSION XM_059366464 VERSION XM_059366464.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4492 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4492 /gene="LOC106088778" /note="dorsal-ventral patterning protein Sog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106088778" CDS 435..3467 /gene="LOC106088778" /codon_start=1 /product="dorsal-ventral patterning protein Sog" /protein_id="XP_059222447.1" /db_xref="GeneID:106088778" /translation="MSRIYTTSQSRLCELTSVMFKILIFSLVCLSQTTLAYGRKHSPL IVDEADGNRRNNRPAVSECQFGKTLRELGSTWYADLGPPFGVMYCIKCECVAVPKKRR IVARVQCRNIKNECPPALCDDPVLLPGKCCKTCPGDKNDTMALDVPAHVEEEERNMKH FAALLTGRTSHFLKGEEMKSMYTTHNPHNIVATGRFMFHKKNLYYSFYTSSKVNRPRA IQFVDDSGTILEEHQLQLPAGPQSIYQNVTGKICGVWRRVPRDYKRLLRDERLHVVLL WGGNKFQTELALAGRIGKYTALQSELFSALMEPAPGSKSDIMSGSGGTAIVSTSSGAA SSMHLTLVFNGVFSPDDYVDSPVSIRIESPDRREVVLDEVQKVRKPSSEVNVLEISSP ISIQNLRLMSRGKLLLSVESKKNPNLRIQGHIVTRTTCEIFQTLLAPHNVEAKTRSSG LAWVFLNTDGSLSYNIETDQVNARDHPEISLIEDMGKRKAVLEDLTPSFNFNQAIGSV DKLGPKVVESLYAGDLGINIAVEHETSLIRGRLVPRPVADARDSAEPILLKRSEMSTI APHHAMGMAWLSIDNECNLHYELTLSGFQPHVQDLQIFLEEKPIEAIGAPVTRKLLEE FSGSYMEGFVLGMPSNELVKLESSVCYLEVHSKEKNELLLRGKLKSTKVPAHCFPIYT DNNVPNVYLPGDRNDDLLITADTKCYHSGRFYDETEQWRSTEDTCQMCACQRGHATCE PIKCPVVHCKLNEELIQEEGECCAMCVPQSLNGKEVAVAAGLSEAAGGAEHNKRGCRL GDQFHVAGATWHPFLPPNGFDTCTTCTCDALTLEIRCPRMVCPPLQCKEKEAYRPDKK ACCKVCPEGKMSSSRVDKMGPSNPNVLQDQASLKPNVRTSEEILSQGGCKVVNKLYEN GQEWHPVLASHGEQKCIKCRCKDSKVNCDRKRCSRSTCQQARVSSKRKIYEKPGSEPA VDECCSTQCKRPRRHHRRTQQQQQQGEQQQTNKRGVSS" polyA_site 4492 /gene="LOC106088778" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcagcgagta acagagtcga tcgtgtgccc aacagcagca taatagcaag caagaaaaat 61 tttcaacatt tttacgcaag agagaacgat tttgtacaag taaattttgt ttttacttca 121 atgcgacaaa tgtgaagtgt tttttttttt aacgaatgct gtggcaaaaa aaatgtaaac 181 caaacaacat ctacaacaac aacaacaaca aagaaaaaat acgaatataa agtaacaaat 241 cgacaatttt gcaaagtagc aacagaaaaa aagaagagta tataaaaaaa gtttcccaac 301 aaagaaaaaa gcataaaaat ttaagtgttt tttttttcaa atataaaaaa taataacaac 361 aacatcaata aataacgcat aaaaggaaaa cttcccaaca cccattcatc aaggaaaaaa 421 caaaactcca aaaaatgtcc agaatttata caacatcaca gagtcgcctt tgcgagttaa 481 cttcagtcat gttcaagatt ttaatcttca gcctggtgtg ccttagccaa acaactttgg 541 cttatggccg caaacattca cctttaattg tggacgaagc cgatggcaat cgaaggaaca 601 atcgaccagc ggtatccgaa tgccaatttg gcaaaacttt acgagaatta ggctcgacct 661 ggtatgctga tttgggacca ccgtttggcg tcatgtattg cataaaatgc gaatgtgtgg 721 cggttcccaa aaaacgccgc attgtggctc gcgttcaatg tcgaaatatt aaaaacgaat 781 gccccccagc cttgtgcgat gatcctgtct tgttgcccgg taaatgttgc aaaacatgtc 841 ccggtgataa aaatgacact atggccttag atgtaccggc acatgtcgaa gaagaggagc 901 gcaatatgaa acatttcgct gctctcctca caggtcgcac ttcgcatttt ctgaaaggtg 961 aagaaatgaa atccatgtac accactcaca atccccacaa cattgtggcc actggccgct 1021 tcatgttcca caaaaagaat ctttactatt ccttctatac ctcgtccaag gtcaatcgtc 1081 cacgtgccat acaatttgtc gatgactcgg gcactatttt ggaagaacat caattgcaat 1141 tgcccgccgg tccccaatcg atctatcaaa atgtcactgg caaaatctgt ggtgtatggc 1201 gtcgtgtacc gcgtgattat aagcgtctat tgcgtgatga gcgcctgcat gtggtgctgc 1261 tctggggtgg caacaaattc caaaccgaat tggctttggc cggcagaatt ggcaaataca 1321 ccgccttgca atcggaattg tttagtgccc taatggagcc tgctcctggt tcgaaatcgg 1381 atataatgtc tggttccggt ggcaccgcca ttgtctccac cagcagtggt gctgcttcct 1441 ccatgcattt gactttggtc ttcaatggag tcttctcgcc cgatgattat gttgactctc 1501 ccgtcagcat tcgcattgaa tcacctgatc gccgcgaagt ggttctagat gaggtgcaga 1561 aggtgcgcaa accctcttcg gaggtaaatg tcctggaaat atcttctccc atttccatac 1621 agaacttgcg tttgatgtcg cgtggcaaat tgcttttaag cgtcgaatcg aagaagaacc 1681 ccaatttacg catacaagga cacattgtta cccgtaccac ctgcgagatt ttccaaaccc 1741 ttttggcccc ccacaatgtg gaggccaaaa cccggagcag tggtttagcc tgggtatttt 1801 tgaacacaga tggctccttg tcctacaaca ttgagactga ccaggtaaat gccagagatc 1861 atcctgagat cagtttgata gaggatatgg gcaagcgcaa agccgtcttg gaggacttga 1921 cacccagctt caacttcaat caagccattg gctctgtgga caaactgggc cccaaggtgg 1981 tcgagtcttt gtatgcgggc gatttgggta tcaacattgc ggtggaacat gaaaccagcc 2041 tgataagagg ccgtttggtg ccccgacctg tggcagatgc ccgcgattca gccgaaccca 2101 tactgttgaa acgttctgag atgtctacca ttgcccccca tcacgccatg ggcatggctt 2161 ggctatccat agacaatgaa tgcaatctgc actatgaact aaccctgagt ggcttccagc 2221 cccatgtgca ggatttgcaa atctttttgg aagagaaacc cattgaggcc ataggtgctc 2281 cagtcactcg caaacttttg gaagaatttt ccggctccta catggagggc tttgttttgg 2341 gcatgccctc caatgaactg gtaaagctgg aatcaagtgt ctgctacttg gaagtgcatt 2401 ccaaggagaa gaatgaattg ctgctgcgcg gcaagttgaa gtcgacaaaa gtcccagccc 2461 attgcttccc catatacacg gacaacaatg tgcccaatgt ttacctgccc ggcgatcgta 2521 atgatgacct tttaataacg gccgacacca aatgttatca ctcggggcgt ttttacgatg 2581 aaaccgaaca atggcgcagc acggaagata cctgccagat gtgtgcctgc cagcggggtc 2641 atgctacttg cgagcccatc aaatgtcctg tggtgcactg caaactgaat gaagagctga 2701 tccaggaaga aggtgaatgc tgtgcaatgt gtgtgccaca aagtctcaat ggcaaggagg 2761 tggcagtagc cgcaggcctt agcgaagcgg caggcggagc agagcataat aaacgtggtt 2821 gtcgcctagg cgatcaattc catgtggctg gggccacctg gcatcccttc ctgccgccca 2881 atggcttcga tacctgcacc acctgtactt gtgatgcctt gactttggaa atcagatgtc 2941 cccgcatggt ttgccccccc ttgcagtgca aggaaaagga agcctatcgt ccagacaaga 3001 aggcgtgttg caaagtttgc cccgaaggca aaatgtccag cagcagagta gacaaaatgg 3061 gtccctccaa tcccaatgtt ttgcaagatc aggcctcgct caaacccaat gtgagaacca 3121 gtgaagagat cctatcacaa ggaggctgca aggtggtcaa caagctctat gaaaatggcc 3181 aagaatggca tcctgttttg gcctcgcatg gggagcaaaa atgcatcaaa tgcaggtgca 3241 aggactccaa ggtcaattgt gatcgcaaac gttgctcacg atccacctgc cagcaggcca 3301 gagtctcatc gaaacgcaaa atctatgaga aaccaggctc cgagcctgca gtggacgagt 3361 gttgctccac ccaatgcaaa aggccaagga gacatcaccg aagaacccag cagcagcagc 3421 aacagggcga acaacaacag acaaacaaac gcggtgtcag cagctgaatc cttttctact 3481 ctcaggcaaa ataaaaaagc tctaatataa tttgtagaga ggctgagtat gagagtacct 3541 atgctagcaa tagagaaaac aatcacatca acaaaccaag caaccaatac accgagagaa 3601 gacacaccaa cagttcttac ttagcagaga gaaggaagga aaagctcgaa tgccgaagaa 3661 aattcgaatg aaacttgatc ttcgattttc tttgccatca aaacaaaaaa gaagaaagcc 3721 cagcaaacaa ttttctaaac caaccaccaa ccaaacaacc cagcaccaac actgagagaa 3781 atcctaattg cagaacagct tatttgcaag caacaactga aaccccgaga aaagctttag 3841 ttttacagag agagagagag agaaaaagct taaatgtatt acaaagaaaa caaaacaaaa 3901 aaaaaccaac actactataa aatgcaaaaa aacgagagta cacttacaaa aaataccagt 3961 gcagtagacg ataaactata caaaaaaaaa tattatttat ttcttcttgt ttttgtttta 4021 caaaagaaaa aaaaattcaa aatccttctc tcactttatc tcactctctc tctctctcgc 4081 tctgcctcct tcatgcttta catgtcatag aaaagtttca atgtctttgt gagtacggct 4141 attgcagttg tttagtcacc gagaaagtgt tgcgagagag agagagggag agcgcgcgat 4201 gcagagaatg ataaaatgag agatgatggt gtagacgagt aacgcaagag aatggtagat 4261 aaggcgaaga aaaataatat ttttgcaaat atttatagaa acacatccca aaagtttcga 4321 ctgattgact gaatggcaac tttagtttta aggcttaaga aatatacata catacatgca 4381 tacatacata catacattga tgaataatac atgcatacat gctatatgca tacatacata 4441 catactttat tattatgaaa tgaagaaaag aaaaatattt tacttaaata ca