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LOCUS XM_059366463 5168 bp mRNA linear INV 02-SEP-2023 Sog (LOC106088778), transcript variant X3, mRNA. ACCESSION XM_059366463 VERSION XM_059366463.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5168 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5168 /gene="LOC106088778" /note="dorsal-ventral patterning protein Sog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106088778" CDS 1111..4143 /gene="LOC106088778" /codon_start=1 /product="dorsal-ventral patterning protein Sog" /protein_id="XP_059222446.1" /db_xref="GeneID:106088778" /translation="MSRIYTTSQSRLCELTSVMFKILIFSLVCLSQTTLAYGRKHSPL IVDEADGNRRNNRPAVSECQFGKTLRELGSTWYADLGPPFGVMYCIKCECVAVPKKRR IVARVQCRNIKNECPPALCDDPVLLPGKCCKTCPGDKNDTMALDVPAHVEEEERNMKH FAALLTGRTSHFLKGEEMKSMYTTHNPHNIVATGRFMFHKKNLYYSFYTSSKVNRPRA IQFVDDSGTILEEHQLQLPAGPQSIYQNVTGKICGVWRRVPRDYKRLLRDERLHVVLL WGGNKFQTELALAGRIGKYTALQSELFSALMEPAPGSKSDIMSGSGGTAIVSTSSGAA SSMHLTLVFNGVFSPDDYVDSPVSIRIESPDRREVVLDEVQKVRKPSSEVNVLEISSP ISIQNLRLMSRGKLLLSVESKKNPNLRIQGHIVTRTTCEIFQTLLAPHNVEAKTRSSG LAWVFLNTDGSLSYNIETDQVNARDHPEISLIEDMGKRKAVLEDLTPSFNFNQAIGSV DKLGPKVVESLYAGDLGINIAVEHETSLIRGRLVPRPVADARDSAEPILLKRSEMSTI APHHAMGMAWLSIDNECNLHYELTLSGFQPHVQDLQIFLEEKPIEAIGAPVTRKLLEE FSGSYMEGFVLGMPSNELVKLESSVCYLEVHSKEKNELLLRGKLKSTKVPAHCFPIYT DNNVPNVYLPGDRNDDLLITADTKCYHSGRFYDETEQWRSTEDTCQMCACQRGHATCE PIKCPVVHCKLNEELIQEEGECCAMCVPQSLNGKEVAVAAGLSEAAGGAEHNKRGCRL GDQFHVAGATWHPFLPPNGFDTCTTCTCDALTLEIRCPRMVCPPLQCKEKEAYRPDKK ACCKVCPEGKMSSSRVDKMGPSNPNVLQDQASLKPNVRTSEEILSQGGCKVVNKLYEN GQEWHPVLASHGEQKCIKCRCKDSKVNCDRKRCSRSTCQQARVSSKRKIYEKPGSEPA VDECCSTQCKRPRRHHRRTQQQQQQGEQQQTNKRGVSS" polyA_site 5168 /gene="LOC106088778" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcagcgagta acagagtcga tcgtgtgccc aacagcagca taatagcaag caagaaaaat 61 tttcaacatt tttacgcaag agagaacgat tttgtacaag taaattttgt ttttacttca 121 atgcgacaaa tgtgaagtgt tttttttttt aacgaatgct gtggcaaaaa aaagtgtgta 181 tgaattttct tttttttttt tgattttgag gcaagcagct tacacaaata ttttggcacg 241 agagtgaacc ccaagactgc gacgtagtca tataccaatt cactttacga aacgccccca 301 gacgccgcat cacaaggatc cccctctcta agagtaacaa gatagaacca acaacatcca 361 tgtatgtctc cacattgagg ggcatttgaa tgaaaaaaac cgagagagaa aaaaaaacga 421 aaaacccaag caaaaaaaac tgcaaagtca aaagttcgct ctcccccttg actggcaaaa 481 gcaacatcaa cacgaaactg aaaaagtttt tttgtttctt ttatgttgtt tcggtgttat 541 tttttgtctt ctctgagagc ccctcactca gctagccaac cagcccagcc gccctgtgtg 601 tgagtcgtaa tcgttaacgc cgtcgtcgtc ggcgtcgtcg ttgtccgtcg ttgtgtaccg 661 agcaacaaaa acagctctcg ttagtttatt tattcaacga ccacaaccgt gtgtgaacat 721 tatttttcga aacgcgcaac acataacaac accaccaaac aacactacca cttactacta 781 ctactcctcc caaaaacaac gcgcacgccg aaccgcaaaa actcttccat ctccaagtta 841 tatggaagtt gtaaaccaaa caacatctac aacaacaaca acaacaaaga aaaaatacga 901 atataaagta acaaatcgac aattttgcaa agtagcaaca gaaaaaaaga agagtatata 961 aaaaaagttt cccaacaaag aaaaaagcat aaaaatttaa gtgttttttt tttcaaatat 1021 aaaaaataat aacaacaaca tcaataaata acgcataaaa ggaaaacttc ccaacaccca 1081 ttcatcaagg aaaaaacaaa actccaaaaa atgtccagaa tttatacaac atcacagagt 1141 cgcctttgcg agttaacttc agtcatgttc aagattttaa tcttcagcct ggtgtgcctt 1201 agccaaacaa ctttggctta tggccgcaaa cattcacctt taattgtgga cgaagccgat 1261 ggcaatcgaa ggaacaatcg accagcggta tccgaatgcc aatttggcaa aactttacga 1321 gaattaggct cgacctggta tgctgatttg ggaccaccgt ttggcgtcat gtattgcata 1381 aaatgcgaat gtgtggcggt tcccaaaaaa cgccgcattg tggctcgcgt tcaatgtcga 1441 aatattaaaa acgaatgccc cccagccttg tgcgatgatc ctgtcttgtt gcccggtaaa 1501 tgttgcaaaa catgtcccgg tgataaaaat gacactatgg ccttagatgt accggcacat 1561 gtcgaagaag aggagcgcaa tatgaaacat ttcgctgctc tcctcacagg tcgcacttcg 1621 cattttctga aaggtgaaga aatgaaatcc atgtacacca ctcacaatcc ccacaacatt 1681 gtggccactg gccgcttcat gttccacaaa aagaatcttt actattcctt ctatacctcg 1741 tccaaggtca atcgtccacg tgccatacaa tttgtcgatg actcgggcac tattttggaa 1801 gaacatcaat tgcaattgcc cgccggtccc caatcgatct atcaaaatgt cactggcaaa 1861 atctgtggtg tatggcgtcg tgtaccgcgt gattataagc gtctattgcg tgatgagcgc 1921 ctgcatgtgg tgctgctctg gggtggcaac aaattccaaa ccgaattggc tttggccggc 1981 agaattggca aatacaccgc cttgcaatcg gaattgttta gtgccctaat ggagcctgct 2041 cctggttcga aatcggatat aatgtctggt tccggtggca ccgccattgt ctccaccagc 2101 agtggtgctg cttcctccat gcatttgact ttggtcttca atggagtctt ctcgcccgat 2161 gattatgttg actctcccgt cagcattcgc attgaatcac ctgatcgccg cgaagtggtt 2221 ctagatgagg tgcagaaggt gcgcaaaccc tcttcggagg taaatgtcct ggaaatatct 2281 tctcccattt ccatacagaa cttgcgtttg atgtcgcgtg gcaaattgct tttaagcgtc 2341 gaatcgaaga agaaccccaa tttacgcata caaggacaca ttgttacccg taccacctgc 2401 gagattttcc aaaccctttt ggccccccac aatgtggagg ccaaaacccg gagcagtggt 2461 ttagcctggg tatttttgaa cacagatggc tccttgtcct acaacattga gactgaccag 2521 gtaaatgcca gagatcatcc tgagatcagt ttgatagagg atatgggcaa gcgcaaagcc 2581 gtcttggagg acttgacacc cagcttcaac ttcaatcaag ccattggctc tgtggacaaa 2641 ctgggcccca aggtggtcga gtctttgtat gcgggcgatt tgggtatcaa cattgcggtg 2701 gaacatgaaa ccagcctgat aagaggccgt ttggtgcccc gacctgtggc agatgcccgc 2761 gattcagccg aacccatact gttgaaacgt tctgagatgt ctaccattgc cccccatcac 2821 gccatgggca tggcttggct atccatagac aatgaatgca atctgcacta tgaactaacc 2881 ctgagtggct tccagcccca tgtgcaggat ttgcaaatct ttttggaaga gaaacccatt 2941 gaggccatag gtgctccagt cactcgcaaa cttttggaag aattttccgg ctcctacatg 3001 gagggctttg ttttgggcat gccctccaat gaactggtaa agctggaatc aagtgtctgc 3061 tacttggaag tgcattccaa ggagaagaat gaattgctgc tgcgcggcaa gttgaagtcg 3121 acaaaagtcc cagcccattg cttccccata tacacggaca acaatgtgcc caatgtttac 3181 ctgcccggcg atcgtaatga tgacctttta ataacggccg acaccaaatg ttatcactcg 3241 gggcgttttt acgatgaaac cgaacaatgg cgcagcacgg aagatacctg ccagatgtgt 3301 gcctgccagc ggggtcatgc tacttgcgag cccatcaaat gtcctgtggt gcactgcaaa 3361 ctgaatgaag agctgatcca ggaagaaggt gaatgctgtg caatgtgtgt gccacaaagt 3421 ctcaatggca aggaggtggc agtagccgca ggccttagcg aagcggcagg cggagcagag 3481 cataataaac gtggttgtcg cctaggcgat caattccatg tggctggggc cacctggcat 3541 cccttcctgc cgcccaatgg cttcgatacc tgcaccacct gtacttgtga tgccttgact 3601 ttggaaatca gatgtccccg catggtttgc ccccccttgc agtgcaagga aaaggaagcc 3661 tatcgtccag acaagaaggc gtgttgcaaa gtttgccccg aaggcaaaat gtccagcagc 3721 agagtagaca aaatgggtcc ctccaatccc aatgttttgc aagatcaggc ctcgctcaaa 3781 cccaatgtga gaaccagtga agagatccta tcacaaggag gctgcaaggt ggtcaacaag 3841 ctctatgaaa atggccaaga atggcatcct gttttggcct cgcatgggga gcaaaaatgc 3901 atcaaatgca ggtgcaagga ctccaaggtc aattgtgatc gcaaacgttg ctcacgatcc 3961 acctgccagc aggccagagt ctcatcgaaa cgcaaaatct atgagaaacc aggctccgag 4021 cctgcagtgg acgagtgttg ctccacccaa tgcaaaaggc caaggagaca tcaccgaaga 4081 acccagcagc agcagcaaca gggcgaacaa caacagacaa acaaacgcgg tgtcagcagc 4141 tgaatccttt tctactctca ggcaaaataa aaaagctcta atataatttg tagagaggct 4201 gagtatgaga gtacctatgc tagcaataga gaaaacaatc acatcaacaa accaagcaac 4261 caatacaccg agagaagaca caccaacagt tcttacttag cagagagaag gaaggaaaag 4321 ctcgaatgcc gaagaaaatt cgaatgaaac ttgatcttcg attttctttg ccatcaaaac 4381 aaaaaagaag aaagcccagc aaacaatttt ctaaaccaac caccaaccaa acaacccagc 4441 accaacactg agagaaatcc taattgcaga acagcttatt tgcaagcaac aactgaaacc 4501 ccgagaaaag ctttagtttt acagagagag agagagagaa aaagcttaaa tgtattacaa 4561 agaaaacaaa acaaaaaaaa accaacacta ctataaaatg caaaaaaacg agagtacact 4621 tacaaaaaat accagtgcag tagacgataa actatacaaa aaaaaatatt atttatttct 4681 tcttgttttt gttttacaaa agaaaaaaaa attcaaaatc cttctctcac tttatctcac 4741 tctctctctc tctcgctctg cctccttcat gctttacatg tcatagaaaa gtttcaatgt 4801 ctttgtgagt acggctattg cagttgttta gtcaccgaga aagtgttgcg agagagagag 4861 agggagagcg cgcgatgcag agaatgataa aatgagagat gatggtgtag acgagtaacg 4921 caagagaatg gtagataagg cgaagaaaaa taatattttt gcaaatattt atagaaacac 4981 atcccaaaag tttcgactga ttgactgaat ggcaacttta gttttaaggc ttaagaaata 5041 tacatacata catgcataca tacatacata cattgatgaa taatacatgc atacatgcta 5101 tatgcataca tacatacata ctttattatt atgaaatgaa gaaaagaaaa atattttact 5161 taaataca