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LOCUS XM_059366461 5499 bp mRNA linear INV 02-SEP-2023 Sog (LOC106088778), transcript variant X2, mRNA. ACCESSION XM_059366461 VERSION XM_059366461.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5499 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5499 /gene="LOC106088778" /note="dorsal-ventral patterning protein Sog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106088778" CDS 1442..4474 /gene="LOC106088778" /codon_start=1 /product="dorsal-ventral patterning protein Sog" /protein_id="XP_059222444.1" /db_xref="GeneID:106088778" /translation="MSRIYTTSQSRLCELTSVMFKILIFSLVCLSQTTLAYGRKHSPL IVDEADGNRRNNRPAVSECQFGKTLRELGSTWYADLGPPFGVMYCIKCECVAVPKKRR IVARVQCRNIKNECPPALCDDPVLLPGKCCKTCPGDKNDTMALDVPAHVEEEERNMKH FAALLTGRTSHFLKGEEMKSMYTTHNPHNIVATGRFMFHKKNLYYSFYTSSKVNRPRA IQFVDDSGTILEEHQLQLPAGPQSIYQNVTGKICGVWRRVPRDYKRLLRDERLHVVLL WGGNKFQTELALAGRIGKYTALQSELFSALMEPAPGSKSDIMSGSGGTAIVSTSSGAA SSMHLTLVFNGVFSPDDYVDSPVSIRIESPDRREVVLDEVQKVRKPSSEVNVLEISSP ISIQNLRLMSRGKLLLSVESKKNPNLRIQGHIVTRTTCEIFQTLLAPHNVEAKTRSSG LAWVFLNTDGSLSYNIETDQVNARDHPEISLIEDMGKRKAVLEDLTPSFNFNQAIGSV DKLGPKVVESLYAGDLGINIAVEHETSLIRGRLVPRPVADARDSAEPILLKRSEMSTI APHHAMGMAWLSIDNECNLHYELTLSGFQPHVQDLQIFLEEKPIEAIGAPVTRKLLEE FSGSYMEGFVLGMPSNELVKLESSVCYLEVHSKEKNELLLRGKLKSTKVPAHCFPIYT DNNVPNVYLPGDRNDDLLITADTKCYHSGRFYDETEQWRSTEDTCQMCACQRGHATCE PIKCPVVHCKLNEELIQEEGECCAMCVPQSLNGKEVAVAAGLSEAAGGAEHNKRGCRL GDQFHVAGATWHPFLPPNGFDTCTTCTCDALTLEIRCPRMVCPPLQCKEKEAYRPDKK ACCKVCPEGKMSSSRVDKMGPSNPNVLQDQASLKPNVRTSEEILSQGGCKVVNKLYEN GQEWHPVLASHGEQKCIKCRCKDSKVNCDRKRCSRSTCQQARVSSKRKIYEKPGSEPA VDECCSTQCKRPRRHHRRTQQQQQQGEQQQTNKRGVSS" polyA_site 5499 /gene="LOC106088778" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcagcgagta acagagtcga tcgtgtgccc aacagcagca taatagcaag caagaaaaat 61 tttcaacatt tttacgcaag agagaacgat tttgtacaag taaattttgt ttttacttca 121 atgcgacaaa tgtgaagtgt tttttttttt aacgaatgct gtggcaaaaa aaagtgtgta 181 tgaattttct tttttttttt tgattttgag gcaagcagct tacacaaata ttttggcacg 241 agagtgaacc ccaagactgc gacgtagtca tataccaatt cactttacga aacgccccca 301 gacgccgcat cacaaggatc cccctctcta agagtaacaa gatagaacca acaacatcca 361 tgtatgtctc cacattgagg ggcatttgaa tgaaaaaaac cgagagagaa aaaaaaacga 421 aaaacccaag caaaaaaaac tgcaaagtca aaagttcgct ctcccccttg actggcaaaa 481 gcaacatcaa cacgaaactg aaaaagtttt tttgtttctt ttatgttgtt tcggtgttat 541 tttttgtctt ctctgagagc ccctcactca gctagccaac cagcccagcc gccctgtgtg 601 tgagtcgtaa tcgttaacgc cgtcgtcgtc ggcgtcgtcg ttgtccgtcg ttgtgtaccg 661 agcaacaaaa acagctctcg ttagtttatt tattcaacga ccacaaccgt gtgtgaacat 721 tatttttcga aacgcgcaac acataacaac accaccaaac aacactacca cttactacta 781 ctactcctcc caaaaacaac gcgcacgccg aaccgcaaaa actcttccat ctccaagtta 841 tatggaagtg taagaaaata taacaacaac aaatcgaaaa cctggctgta tcgaggagga 901 aatcgtaacg agttcaagaa aagaactttt gcgatttttt ctttttgggg acttttgaac 961 tggcttgtac ggactgaaac gtgtaccgcc gccatagccg ccaaacaaaa atcaaccaaa 1021 ccgaccgatg aaaaacacaa gagcaacacc ccgcaacggc aaaatctagt ttatttaaag 1081 aaaaaaaaaa gaaaaacaaa agcaaagtat tctgcaaaaa aagaagcaaa caaaaacaaa 1141 aaggtgaaaa agaaaacaca acaacaattc gaacgaacgt tgtaaaccaa acaacatcta 1201 caacaacaac aacaacaaag aaaaaatacg aatataaagt aacaaatcga caattttgca 1261 aagtagcaac agaaaaaaag aagagtatat aaaaaaagtt tcccaacaaa gaaaaaagca 1321 taaaaattta agtgtttttt ttttcaaata taaaaaataa taacaacaac atcaataaat 1381 aacgcataaa aggaaaactt cccaacaccc attcatcaag gaaaaaacaa aactccaaaa 1441 aatgtccaga atttatacaa catcacagag tcgcctttgc gagttaactt cagtcatgtt 1501 caagatttta atcttcagcc tggtgtgcct tagccaaaca actttggctt atggccgcaa 1561 acattcacct ttaattgtgg acgaagccga tggcaatcga aggaacaatc gaccagcggt 1621 atccgaatgc caatttggca aaactttacg agaattaggc tcgacctggt atgctgattt 1681 gggaccaccg tttggcgtca tgtattgcat aaaatgcgaa tgtgtggcgg ttcccaaaaa 1741 acgccgcatt gtggctcgcg ttcaatgtcg aaatattaaa aacgaatgcc ccccagcctt 1801 gtgcgatgat cctgtcttgt tgcccggtaa atgttgcaaa acatgtcccg gtgataaaaa 1861 tgacactatg gccttagatg taccggcaca tgtcgaagaa gaggagcgca atatgaaaca 1921 tttcgctgct ctcctcacag gtcgcacttc gcattttctg aaaggtgaag aaatgaaatc 1981 catgtacacc actcacaatc cccacaacat tgtggccact ggccgcttca tgttccacaa 2041 aaagaatctt tactattcct tctatacctc gtccaaggtc aatcgtccac gtgccataca 2101 atttgtcgat gactcgggca ctattttgga agaacatcaa ttgcaattgc ccgccggtcc 2161 ccaatcgatc tatcaaaatg tcactggcaa aatctgtggt gtatggcgtc gtgtaccgcg 2221 tgattataag cgtctattgc gtgatgagcg cctgcatgtg gtgctgctct ggggtggcaa 2281 caaattccaa accgaattgg ctttggccgg cagaattggc aaatacaccg ccttgcaatc 2341 ggaattgttt agtgccctaa tggagcctgc tcctggttcg aaatcggata taatgtctgg 2401 ttccggtggc accgccattg tctccaccag cagtggtgct gcttcctcca tgcatttgac 2461 tttggtcttc aatggagtct tctcgcccga tgattatgtt gactctcccg tcagcattcg 2521 cattgaatca cctgatcgcc gcgaagtggt tctagatgag gtgcagaagg tgcgcaaacc 2581 ctcttcggag gtaaatgtcc tggaaatatc ttctcccatt tccatacaga acttgcgttt 2641 gatgtcgcgt ggcaaattgc ttttaagcgt cgaatcgaag aagaacccca atttacgcat 2701 acaaggacac attgttaccc gtaccacctg cgagattttc caaacccttt tggcccccca 2761 caatgtggag gccaaaaccc ggagcagtgg tttagcctgg gtatttttga acacagatgg 2821 ctccttgtcc tacaacattg agactgacca ggtaaatgcc agagatcatc ctgagatcag 2881 tttgatagag gatatgggca agcgcaaagc cgtcttggag gacttgacac ccagcttcaa 2941 cttcaatcaa gccattggct ctgtggacaa actgggcccc aaggtggtcg agtctttgta 3001 tgcgggcgat ttgggtatca acattgcggt ggaacatgaa accagcctga taagaggccg 3061 tttggtgccc cgacctgtgg cagatgcccg cgattcagcc gaacccatac tgttgaaacg 3121 ttctgagatg tctaccattg ccccccatca cgccatgggc atggcttggc tatccataga 3181 caatgaatgc aatctgcact atgaactaac cctgagtggc ttccagcccc atgtgcagga 3241 tttgcaaatc tttttggaag agaaacccat tgaggccata ggtgctccag tcactcgcaa 3301 acttttggaa gaattttccg gctcctacat ggagggcttt gttttgggca tgccctccaa 3361 tgaactggta aagctggaat caagtgtctg ctacttggaa gtgcattcca aggagaagaa 3421 tgaattgctg ctgcgcggca agttgaagtc gacaaaagtc ccagcccatt gcttccccat 3481 atacacggac aacaatgtgc ccaatgttta cctgcccggc gatcgtaatg atgacctttt 3541 aataacggcc gacaccaaat gttatcactc ggggcgtttt tacgatgaaa ccgaacaatg 3601 gcgcagcacg gaagatacct gccagatgtg tgcctgccag cggggtcatg ctacttgcga 3661 gcccatcaaa tgtcctgtgg tgcactgcaa actgaatgaa gagctgatcc aggaagaagg 3721 tgaatgctgt gcaatgtgtg tgccacaaag tctcaatggc aaggaggtgg cagtagccgc 3781 aggccttagc gaagcggcag gcggagcaga gcataataaa cgtggttgtc gcctaggcga 3841 tcaattccat gtggctgggg ccacctggca tcccttcctg ccgcccaatg gcttcgatac 3901 ctgcaccacc tgtacttgtg atgccttgac tttggaaatc agatgtcccc gcatggtttg 3961 cccccccttg cagtgcaagg aaaaggaagc ctatcgtcca gacaagaagg cgtgttgcaa 4021 agtttgcccc gaaggcaaaa tgtccagcag cagagtagac aaaatgggtc cctccaatcc 4081 caatgttttg caagatcagg cctcgctcaa acccaatgtg agaaccagtg aagagatcct 4141 atcacaagga ggctgcaagg tggtcaacaa gctctatgaa aatggccaag aatggcatcc 4201 tgttttggcc tcgcatgggg agcaaaaatg catcaaatgc aggtgcaagg actccaaggt 4261 caattgtgat cgcaaacgtt gctcacgatc cacctgccag caggccagag tctcatcgaa 4321 acgcaaaatc tatgagaaac caggctccga gcctgcagtg gacgagtgtt gctccaccca 4381 atgcaaaagg ccaaggagac atcaccgaag aacccagcag cagcagcaac agggcgaaca 4441 acaacagaca aacaaacgcg gtgtcagcag ctgaatcctt ttctactctc aggcaaaata 4501 aaaaagctct aatataattt gtagagaggc tgagtatgag agtacctatg ctagcaatag 4561 agaaaacaat cacatcaaca aaccaagcaa ccaatacacc gagagaagac acaccaacag 4621 ttcttactta gcagagagaa ggaaggaaaa gctcgaatgc cgaagaaaat tcgaatgaaa 4681 cttgatcttc gattttcttt gccatcaaaa caaaaaagaa gaaagcccag caaacaattt 4741 tctaaaccaa ccaccaacca aacaacccag caccaacact gagagaaatc ctaattgcag 4801 aacagcttat ttgcaagcaa caactgaaac cccgagaaaa gctttagttt tacagagaga 4861 gagagagaga aaaagcttaa atgtattaca aagaaaacaa aacaaaaaaa aaccaacact 4921 actataaaat gcaaaaaaac gagagtacac ttacaaaaaa taccagtgca gtagacgata 4981 aactatacaa aaaaaaatat tatttatttc ttcttgtttt tgttttacaa aagaaaaaaa 5041 aattcaaaat ccttctctca ctttatctca ctctctctct ctctcgctct gcctccttca 5101 tgctttacat gtcatagaaa agtttcaatg tctttgtgag tacggctatt gcagttgttt 5161 agtcaccgag aaagtgttgc gagagagaga gagggagagc gcgcgatgca gagaatgata 5221 aaatgagaga tgatggtgta gacgagtaac gcaagagaat ggtagataag gcgaagaaaa 5281 ataatatttt tgcaaatatt tatagaaaca catcccaaaa gtttcgactg attgactgaa 5341 tggcaacttt agttttaagg cttaagaaat atacatacat acatgcatac atacatacat 5401 acattgatga ataatacatg catacatgct atatgcatac atacatacat actttattat 5461 tatgaaatga agaaaagaaa aatattttac ttaaataca