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LOCUS XM_059366460 5683 bp mRNA linear INV 02-SEP-2023 Sog (LOC106088778), transcript variant X1, mRNA. ACCESSION XM_059366460 VERSION XM_059366460.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5683 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5683 /gene="LOC106088778" /note="dorsal-ventral patterning protein Sog; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106088778" CDS 1626..4658 /gene="LOC106088778" /codon_start=1 /product="dorsal-ventral patterning protein Sog" /protein_id="XP_059222443.1" /db_xref="GeneID:106088778" /translation="MSRIYTTSQSRLCELTSVMFKILIFSLVCLSQTTLAYGRKHSPL IVDEADGNRRNNRPAVSECQFGKTLRELGSTWYADLGPPFGVMYCIKCECVAVPKKRR IVARVQCRNIKNECPPALCDDPVLLPGKCCKTCPGDKNDTMALDVPAHVEEEERNMKH FAALLTGRTSHFLKGEEMKSMYTTHNPHNIVATGRFMFHKKNLYYSFYTSSKVNRPRA IQFVDDSGTILEEHQLQLPAGPQSIYQNVTGKICGVWRRVPRDYKRLLRDERLHVVLL WGGNKFQTELALAGRIGKYTALQSELFSALMEPAPGSKSDIMSGSGGTAIVSTSSGAA SSMHLTLVFNGVFSPDDYVDSPVSIRIESPDRREVVLDEVQKVRKPSSEVNVLEISSP ISIQNLRLMSRGKLLLSVESKKNPNLRIQGHIVTRTTCEIFQTLLAPHNVEAKTRSSG LAWVFLNTDGSLSYNIETDQVNARDHPEISLIEDMGKRKAVLEDLTPSFNFNQAIGSV DKLGPKVVESLYAGDLGINIAVEHETSLIRGRLVPRPVADARDSAEPILLKRSEMSTI APHHAMGMAWLSIDNECNLHYELTLSGFQPHVQDLQIFLEEKPIEAIGAPVTRKLLEE FSGSYMEGFVLGMPSNELVKLESSVCYLEVHSKEKNELLLRGKLKSTKVPAHCFPIYT DNNVPNVYLPGDRNDDLLITADTKCYHSGRFYDETEQWRSTEDTCQMCACQRGHATCE PIKCPVVHCKLNEELIQEEGECCAMCVPQSLNGKEVAVAAGLSEAAGGAEHNKRGCRL GDQFHVAGATWHPFLPPNGFDTCTTCTCDALTLEIRCPRMVCPPLQCKEKEAYRPDKK ACCKVCPEGKMSSSRVDKMGPSNPNVLQDQASLKPNVRTSEEILSQGGCKVVNKLYEN GQEWHPVLASHGEQKCIKCRCKDSKVNCDRKRCSRSTCQQARVSSKRKIYEKPGSEPA VDECCSTQCKRPRRHHRRTQQQQQQGEQQQTNKRGVSS" polyA_site 5683 /gene="LOC106088778" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcagcgagta acagagtcga tcgtgtgccc aacagcagca taatagcaag caagaaaaat 61 tttcaacatt tttacgcaag agagaacgat tttgtacaag taaattttgt ttttacttca 121 atgcgacaaa tgtgaagtgt tttttttttt aacgaatgct gtggcaaaaa aaagtgtgta 181 tgaattttct tttttttttt tgattttgag gcaagcagct tacacaaata ttttggcacg 241 agagtgaacc ccaagactgc gacgtagtca tataccaatt cactttacga aacgccccca 301 gacgccgcat cacaaggatc cccctctcta agagtaacaa gatagaacca acaacatcca 361 tgtatgtctc cacattgagg ggcatttgaa tgaaaaaaac cgagagagaa aaaaaaacga 421 aaaacccaag caaaaaaaac tgcaaagtca aaagttcgct ctcccccttg actggcaaaa 481 gcaacatcaa cacgaaactg aaaaagtttt tttgtttctt ttatgttgtt tcggtgttat 541 tttttgtctt ctctgagagc ccctcactca gctagccaac cagcccagcc gccctgtgtg 601 tgagtcgtaa tcgttaacgc cgtcgtcgtc ggcgtcgtcg ttgtccgtcg ttgtgtaccg 661 agcaacaaaa acagctctcg ttagtttatt tattcaacga ccacaaccgt gtgtgaacat 721 tatttttcga aacgcgcaac acataacaac accaccaaac aacactacca cttactacta 781 ctactcctcc caaaaacaac gcgcacgccg aaccgcaaaa actcttccat ctccaagtta 841 tatggaagtg taagaaaata taacaacaac aaatcgaaaa cctggctgta tcgaggagga 901 aatcgtaacg agttcaagaa aagaactttt gcgatttttt ctttttgggg acttttgaac 961 tggcttgtac ggactgaaac gtgtaccgcc gccatagccg ccaaacaaaa atcaaccaaa 1021 ccgaccgatg aaaaacacaa gagcaacacc ccgcaacggc aaaatctagt ttatttaaag 1081 aaaaaaaaaa gaaaaacaaa agcaaagtat tctgcaaaaa aagaagcaaa caaaaacaaa 1141 aaggtgaaaa agaaaacaca acaacaattc gaacgaacgt gtaagaatta gataaataga 1201 aaaaaaacgc gaatatctta acctaagcaa aaatatttaa aaacaatatt tgtgccgctg 1261 tctccgtcgc cgtcgcagcc gctatagaaa aatccaacaa caataagaaa tcaagtgaaa 1321 aaaatcgaat tattaccaaa aacgaaccta cataaatgta aaagtgtaaa ccaaacaaca 1381 tctacaacaa caacaacaac aaagaaaaaa tacgaatata aagtaacaaa tcgacaattt 1441 tgcaaagtag caacagaaaa aaagaagagt atataaaaaa agtttcccaa caaagaaaaa 1501 agcataaaaa tttaagtgtt ttttttttca aatataaaaa ataataacaa caacatcaat 1561 aaataacgca taaaaggaaa acttcccaac acccattcat caaggaaaaa acaaaactcc 1621 aaaaaatgtc cagaatttat acaacatcac agagtcgcct ttgcgagtta acttcagtca 1681 tgttcaagat tttaatcttc agcctggtgt gccttagcca aacaactttg gcttatggcc 1741 gcaaacattc acctttaatt gtggacgaag ccgatggcaa tcgaaggaac aatcgaccag 1801 cggtatccga atgccaattt ggcaaaactt tacgagaatt aggctcgacc tggtatgctg 1861 atttgggacc accgtttggc gtcatgtatt gcataaaatg cgaatgtgtg gcggttccca 1921 aaaaacgccg cattgtggct cgcgttcaat gtcgaaatat taaaaacgaa tgccccccag 1981 ccttgtgcga tgatcctgtc ttgttgcccg gtaaatgttg caaaacatgt cccggtgata 2041 aaaatgacac tatggcctta gatgtaccgg cacatgtcga agaagaggag cgcaatatga 2101 aacatttcgc tgctctcctc acaggtcgca cttcgcattt tctgaaaggt gaagaaatga 2161 aatccatgta caccactcac aatccccaca acattgtggc cactggccgc ttcatgttcc 2221 acaaaaagaa tctttactat tccttctata cctcgtccaa ggtcaatcgt ccacgtgcca 2281 tacaatttgt cgatgactcg ggcactattt tggaagaaca tcaattgcaa ttgcccgccg 2341 gtccccaatc gatctatcaa aatgtcactg gcaaaatctg tggtgtatgg cgtcgtgtac 2401 cgcgtgatta taagcgtcta ttgcgtgatg agcgcctgca tgtggtgctg ctctggggtg 2461 gcaacaaatt ccaaaccgaa ttggctttgg ccggcagaat tggcaaatac accgccttgc 2521 aatcggaatt gtttagtgcc ctaatggagc ctgctcctgg ttcgaaatcg gatataatgt 2581 ctggttccgg tggcaccgcc attgtctcca ccagcagtgg tgctgcttcc tccatgcatt 2641 tgactttggt cttcaatgga gtcttctcgc ccgatgatta tgttgactct cccgtcagca 2701 ttcgcattga atcacctgat cgccgcgaag tggttctaga tgaggtgcag aaggtgcgca 2761 aaccctcttc ggaggtaaat gtcctggaaa tatcttctcc catttccata cagaacttgc 2821 gtttgatgtc gcgtggcaaa ttgcttttaa gcgtcgaatc gaagaagaac cccaatttac 2881 gcatacaagg acacattgtt acccgtacca cctgcgagat tttccaaacc cttttggccc 2941 cccacaatgt ggaggccaaa acccggagca gtggtttagc ctgggtattt ttgaacacag 3001 atggctcctt gtcctacaac attgagactg accaggtaaa tgccagagat catcctgaga 3061 tcagtttgat agaggatatg ggcaagcgca aagccgtctt ggaggacttg acacccagct 3121 tcaacttcaa tcaagccatt ggctctgtgg acaaactggg ccccaaggtg gtcgagtctt 3181 tgtatgcggg cgatttgggt atcaacattg cggtggaaca tgaaaccagc ctgataagag 3241 gccgtttggt gccccgacct gtggcagatg cccgcgattc agccgaaccc atactgttga 3301 aacgttctga gatgtctacc attgcccccc atcacgccat gggcatggct tggctatcca 3361 tagacaatga atgcaatctg cactatgaac taaccctgag tggcttccag ccccatgtgc 3421 aggatttgca aatctttttg gaagagaaac ccattgaggc cataggtgct ccagtcactc 3481 gcaaactttt ggaagaattt tccggctcct acatggaggg ctttgttttg ggcatgccct 3541 ccaatgaact ggtaaagctg gaatcaagtg tctgctactt ggaagtgcat tccaaggaga 3601 agaatgaatt gctgctgcgc ggcaagttga agtcgacaaa agtcccagcc cattgcttcc 3661 ccatatacac ggacaacaat gtgcccaatg tttacctgcc cggcgatcgt aatgatgacc 3721 ttttaataac ggccgacacc aaatgttatc actcggggcg tttttacgat gaaaccgaac 3781 aatggcgcag cacggaagat acctgccaga tgtgtgcctg ccagcggggt catgctactt 3841 gcgagcccat caaatgtcct gtggtgcact gcaaactgaa tgaagagctg atccaggaag 3901 aaggtgaatg ctgtgcaatg tgtgtgccac aaagtctcaa tggcaaggag gtggcagtag 3961 ccgcaggcct tagcgaagcg gcaggcggag cagagcataa taaacgtggt tgtcgcctag 4021 gcgatcaatt ccatgtggct ggggccacct ggcatccctt cctgccgccc aatggcttcg 4081 atacctgcac cacctgtact tgtgatgcct tgactttgga aatcagatgt ccccgcatgg 4141 tttgcccccc cttgcagtgc aaggaaaagg aagcctatcg tccagacaag aaggcgtgtt 4201 gcaaagtttg ccccgaaggc aaaatgtcca gcagcagagt agacaaaatg ggtccctcca 4261 atcccaatgt tttgcaagat caggcctcgc tcaaacccaa tgtgagaacc agtgaagaga 4321 tcctatcaca aggaggctgc aaggtggtca acaagctcta tgaaaatggc caagaatggc 4381 atcctgtttt ggcctcgcat ggggagcaaa aatgcatcaa atgcaggtgc aaggactcca 4441 aggtcaattg tgatcgcaaa cgttgctcac gatccacctg ccagcaggcc agagtctcat 4501 cgaaacgcaa aatctatgag aaaccaggct ccgagcctgc agtggacgag tgttgctcca 4561 cccaatgcaa aaggccaagg agacatcacc gaagaaccca gcagcagcag caacagggcg 4621 aacaacaaca gacaaacaaa cgcggtgtca gcagctgaat ccttttctac tctcaggcaa 4681 aataaaaaag ctctaatata atttgtagag aggctgagta tgagagtacc tatgctagca 4741 atagagaaaa caatcacatc aacaaaccaa gcaaccaata caccgagaga agacacacca 4801 acagttctta cttagcagag agaaggaagg aaaagctcga atgccgaaga aaattcgaat 4861 gaaacttgat cttcgatttt ctttgccatc aaaacaaaaa agaagaaagc ccagcaaaca 4921 attttctaaa ccaaccacca accaaacaac ccagcaccaa cactgagaga aatcctaatt 4981 gcagaacagc ttatttgcaa gcaacaactg aaaccccgag aaaagcttta gttttacaga 5041 gagagagaga gagaaaaagc ttaaatgtat tacaaagaaa acaaaacaaa aaaaaaccaa 5101 cactactata aaatgcaaaa aaacgagagt acacttacaa aaaataccag tgcagtagac 5161 gataaactat acaaaaaaaa atattattta tttcttcttg tttttgtttt acaaaagaaa 5221 aaaaaattca aaatccttct ctcactttat ctcactctct ctctctctcg ctctgcctcc 5281 ttcatgcttt acatgtcata gaaaagtttc aatgtctttg tgagtacggc tattgcagtt 5341 gtttagtcac cgagaaagtg ttgcgagaga gagagaggga gagcgcgcga tgcagagaat 5401 gataaaatga gagatgatgg tgtagacgag taacgcaaga gaatggtaga taaggcgaag 5461 aaaaataata tttttgcaaa tatttataga aacacatccc aaaagtttcg actgattgac 5521 tgaatggcaa ctttagtttt aaggcttaag aaatatacat acatacatgc atacatacat 5581 acatacattg atgaataata catgcataca tgctatatgc atacatacat acatacttta 5641 ttattatgaa atgaagaaaa gaaaaatatt ttacttaaat aca