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LOCUS XM_059366417 7643 bp mRNA linear INV 02-SEP-2023 (LOC106080759), transcript variant X3, mRNA. ACCESSION XM_059366417 VERSION XM_059366417.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7643 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7643 /gene="LOC106080759" /note="B-box type zinc finger protein ncl-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106080759" CDS 1314..4844 /gene="LOC106080759" /codon_start=1 /product="transcription intermediary factor 1-alpha isoform X1" /protein_id="XP_059222400.1" /db_xref="GeneID:106080759" /translation="MATLEDFAPHILNSTTVTSNTSSATTNIATTADSSSCSFSTVLD SSSITAVAKALEASSFIATPSSASTVDSIVDKLVNSLDLNDTLIANGGCNPIAKDIKS ISSRSSSVAGSLTLGGLGGGNMFSEVFESNVGSELESGSLEDTSGSLCEGDVDKNCKI CSSRLQSPRVLSCLHVFCESCLCKLLNEDSSGGSLSSSSSTSSVGGELIPVSNSCGKS QIKCPVCKQITSVGPKGVKSLTCDYILTNILDLATIESEQLHCTSCKSKENAISRCND CANFLCSGCDNAHKYMRCFENHEVVKLEDLQKTSDGDKPLIIHKPLYCNVHTSENLKY YCFNCQIPVCNDCLIADHKGSEHHYDIIALAEKSVRGDVENLMKEAKSKVQYCDEADA NLSSALTELQTQHDSARDLIQETFENYKKVIEKCRDQALVELKKLHSERVLKIMDLMQ NIQNTMCKIDNTCKFTNRVLEQANAAEFLSMKKLIASQFINMINTTPKCDINYSLTFD TKPDKFEQLAQDTFGKFRTESTPPSPKESTPPPTLPGMPPNMINGRVGGSCSGGSGGA MNCSNSSQSQMASSVTASSPISLPTSMQSSFDGDIYALGNGFMMSNVLTPDSPPQGQS VLPPHHHQLQHQNSTSSHHSSVSGFNGIGSIASGNGNNLNNNMNNTSPAFNGSLGNTP LGSGPNGSLMGNNGLNGLNNSGPPAGMNALNNPLNNSLTAALNGPLGGNAGVAAVPPP GGFNSILEYNLSRLASLTENTPDTLNDPLVGSPSGPTNQSVVPAANAQNQPITLADIL SGDQRAFNNLQALAKLGLNNNDFHTDITSNQLLTNGPSPTGFDCLLPDYCLSTAPSPS LPNLPPLCPGGGAGGSVDDMSIASFHAPQQAQPTTTSIITGRNKATPMQIRCKFGSLG TSKGQFNSPHGFCLGVDEEIIVADTNNHRIEIFDKSGNLKFYFGVPGKEEGQLWYPRK VAVMHTNGKFVVCDRGNERSRMQIFSKSGHFMRKIAIRYIDIVAGLAVTSKGHIVAVD SVSPTVFVISEDGELVRWFDCSDYMREPSDIAIRDNDFYVCDFKGHCVAVFHEDGTFQ YRIGNEKVTCFPNGIDISNAGDILIGDSHGNRFHVACYSRDGVLQSEFECPHVKVSRC CGLKITSEGYVVTLAKNNHHVLVLNTLYVQ" ORIGIN 1 attcgtaaca aacttctcaa ttgtacgaaa agtgattttg aaaaattgtt agtgaagaaa 61 aattcttgac taccacgagc tcgagccgat tcgtggatgt agaaaagtgc tctgaacaag 121 cagcaggaat acaaaggata tacggttttg aacactattg cagcggagat caatcaatca 181 accaagagcg ggaaatattt tctttctatc ctgaaaacaa gttggactat aaagcggaca 241 agaggtagcg ttttgtgaac attgtaattc gttacatttt tttgctattc gtcgtcataa 301 ccgcctcagt gtgcaacacc ctgatataac aacaataaca acaacaacaa caacataacc 361 gccagtcatc gtcgaacgtt tgtgagttgg ccaagtctgc gaattaccta ggccttttgt 421 ggtgggatca aaggcaaatt gtttttgcaa gcgaagacgt agtagcatcg ttataacatc 481 atatttgcaa tacaacaata actacaacta tttaaaataa acatatatat gtacacactt 541 cacttcaaac ttagagagta atttaaagaa aaaacaaaaa aaaaaacaaa aatattgcaa 601 atagtaacaa ttttactaca aaaacacaac atatttcaaa tatttcgtga ttctttcaaa 661 caaccaaaca aaaatacaaa ggaaaaaaca aatagaaaaa actcaattct aaaacaccat 721 ttaaaaaaag aaaaactaaa attgcagcaa atagtaataa taatgataat agagaaccaa 781 acccattaaa tgatattaat caacaatatt taaaaacaat caaaccacaa tatttaatga 841 atatttatca atgaagcttt ttacacaata tttgctctaa cgaataaaga aaaactaact 901 aaagaagtaa gcataataac gaaactcaat tgaaacgcgt aaaaatcacc aactatagaa 961 tcaatcaata gcgtaaaaca gacatacaaa aacaacccca gtggcttttg gcgaaaaaat 1021 aaccctgctt cttgaaaata catcagagat tttgaaatcg caccaccctg cttaattggt 1081 atttttgaag agcttgtgta ctttttggtg aacttgtagc aaccacaaca aaacaaccaa 1141 tcaaaaattc tccaaggctt tagcacatac gtatatcaga tcaaaaagaa agacaaactc 1201 gcagagtaaa taaaggctat agaaggggct cagacctctc agttgcaagc gtttaatctc 1261 caacttcaaa ttcaaaaagt tacactgcgt cacgcgtcat agaggcttta tatatggcaa 1321 ccttagagga ttttgcacca catatcttaa atagcaccac cgtgacctca aacacctcgt 1381 ctgcgaccac aaacattgcc actaccgccg actcaagtag ctgctccttt tccaccgtct 1441 tggactcgtc atcgatcacg gctgttgcca aagcattgga agcttctagt tttatagcga 1501 ccccatctag cgcttccact gtggattcaa tagttgacaa gttggtcaac tcgttggact 1561 tgaacgacac cttaatagcg aacggcggtt gtaatcccat agcaaaggat ataaaaagca 1621 tttcttctcg ttcttcgtcg gttgccggca gcttgaccct aggtgggctg ggcggtggca 1681 acatgtttag tgaagtgttt gaaagcaatg tgggctctga gcttgagtct ggttccttgg 1741 aagacacgtc gggttcgttg tgtgaaggcg atgttgataa gaattgcaag atttgcagtt 1801 cgcgcctgca gtcgcctcgt gttctatcat gccttcatgt cttttgtgag tcatgcctct 1861 gtaagttact taacgaagat tcctcgggag gcagtctttc ttcctcatcg tccacttctt 1921 cggtgggtgg ggaattgatt cccgtttcca attcttgcgg aaaatcgcag atcaagtgtc 1981 cagtatgcaa gcaaatcact tcggttggtc ctaaaggtgt gaaatctttg acatgcgatt 2041 acattttaac caacattttg gatttggcca ccattgaatc ggagcaattg cattgtacct 2101 cttgcaagag caaggagaat gcaatttccc gttgcaatga ttgtgccaat ttcttgtgca 2161 gtggctgcga taatgcccac aagtatatgc gatgctttga gaatcacgaa gtcgtcaagt 2221 tggaagattt gcaaaaaact tcggatggcg ataagccatt gattatccat aagccattgt 2281 attgcaatgt gcacacatca gagaatctca agtattattg ttttaattgc caaataccgg 2341 tgtgtaatga ctgtttgata gctgatcaca agggtagtga acatcactat gatatcatag 2401 cgttggccga gaaatccgtg cgaggtgacg ttgagaatct tatgaaggag gccaaatcga 2461 aggtgcaata ttgcgacgaa gcagacgcaa atttatctag cgctcttacc gagttacaaa 2521 ctcaacatga ttcagcacgc gatctcatcc aagagacctt tgaaaactac aagaaggtta 2581 tagaaaagtg tcgcgatcaa gccttggtgg aactaaagaa actgcattct gaaagagttt 2641 tgaaaattat ggatttaatg caaaatattc agaacaccat gtgtaaaatc gataacacat 2701 gcaaatttac caatcgcgta ttggagcagg caaacgcagc tgaatttcta tcaatgaaga 2761 agttgattgc atctcaattt attaacatga ttaatacaac accgaaatgt gatattaact 2821 attcgctaac gtttgatacg aagccggata agtttgaaca attggcccag gatacttttg 2881 gaaagttccg cacagaatct actccgccat cgccaaaaga aagtacccca ccaccaactt 2941 tgcctggaat gcctccgaat atgattaacg gccgcgtcgg cggttcatgc agtggcggaa 3001 gcggtggtgc aatgaattgt tccaatagct ctcagagtca gatggccagc tcagtaacgg 3061 ccagcagccc aatttctttg ccaacttcca tgcaaagttc ctttgatggt gacatctatg 3121 ctttgggcaa tggtttcatg atgtctaacg tacttacccc agattctcct ccgcaaggtc 3181 aatctgtatt accaccacat caccatcaat tgcaacatca gaacagcact tcttcccacc 3241 acagcagtgt tagtggcttt aatggcattg gttccatcgc atccggcaat ggcaacaact 3301 taaataacaa catgaataat acatcacctg cattcaatgg atctcttggt aacacaccac 3361 tcggttcggg cccaaatggc tcactaatgg gtaacaacgg ccttaacggt ctcaacaact 3421 ctggaccccc ggcgggcatg aatgccttga ataatcctct taataacagt cttactgctg 3481 ctctgaacgg tcctttgggc ggaaatgccg gcgttgctgc tgtaccacca ccaggtggct 3541 ttaatagcat tctcgaatac aatttatctc gtcttgccag tcttactgaa aacacaccag 3601 acacccttaa tgaccctcta gtaggctcgc ccagtggacc caccaatcaa tcagttgttc 3661 cagctgctaa tgcacaaaat cagccaatca ctctggccga cattttgtcc ggtgatcaaa 3721 gagctttcaa caatttacaa gctcttgcta aattggggct aaacaataat gattttcaca 3781 cagacattac aagcaatcag ctattaacga atggaccctc accaactgga tttgattgtt 3841 tattaccaga ttactgccta tccacagcac catcaccaag cttgccaaat ttgccaccat 3901 tgtgccctgg tggtggggca ggtggttcgg ttgatgatat gagcatagct agtttccatg 3961 ccccgcaaca agcgcaacca actacgacga gcattattac gggccgaaat aaggcaacac 4021 caatgcaaat tcgttgcaag tttggttctt taggtacatc gaagggccag ttcaattctc 4081 cgcatggctt ttgcttgggc gtcgatgagg aaatcattgt ggccgatacg aacaatcatc 4141 gcattgaaat ttttgacaag tcgggtaatt tgaaatttta cttcggagta cctggtaagg 4201 aagaaggtca attgtggtat ccgcgcaaag ttgctgttat gcacacaaac ggcaaatttg 4261 ttgtctgtga tcgtggcaac gaacgttcac gcatgcagat cttctcaaaa agtggccatt 4321 ttatgcgcaa aattgccata cgatacattg atattgttgc tggtctggca gttacatcga 4381 aaggacatat cgttgccgtt gacagtgttt cccctactgt gtttgttata tcggaagatg 4441 gtgaattggt gcgttggttc gattgcagcg attacatgcg cgaaccatcc gacattgcca 4501 ttagagacaa cgacttttac gtttgtgact ttaagggtca ctgcgttgcc gtctttcacg 4561 aggatggcac attccaatat cgtataggca atgagaaggt tacatgcttc cccaatggaa 4621 tcgatatatc aaatgctgga gatatattaa tcggagattc ccatggtaat cgcttccatg 4681 ttgcttgcta ttcgcgtgat ggtgttcttc aatcggagtt tgaatgtcca catgtcaagg 4741 tatcccgttg ctgtggtctt aaaataacat cggagggtta tgttgtgaca ttggccaaga 4801 ataaccatca tgttttagtg ctcaatacac tatatgttca gtgattgcaa aaaaagaaat 4861 ctctcaatgc gagacttgat ttattaccgt atggaaaaac tacaacagtt agcaaatctc 4921 accaaacaca ccaacaacaa caacaaacgc aatcgcatct tcaacaacag cagcagcagc 4981 agcaccaaca ccatcatcat caatcgttgc gtgctacagt ttttccagca atgaatggca 5041 gtcattgtgc aaacactcca ataacggtag ctgctacagc tgcagccaat tcaatcggag 5101 caacatcagg cacagccgca gtagtaacac caacagcatc atcatcagca acagcagcag 5161 cagcaagtac atctgtaaac ttcaatttgc ctttgattag caagcatcag ctttataaaa 5221 ctaatactga aaatagtgat aatggtgaac aaacaaaatt acaacttata gattatgatg 5281 aaatttaagg caataatatt tttgtattat tttctttgaa aaaacagaaa aagcaaaaaa 5341 aaaaaaaaac atatttttaa catgatgatg ataacaacgc ctccaaagat acgacgaaat 5401 tttgaattta cgccgccaaa agccaaaaag aaaaaaaaac gtaaaaacaa aacaatttat 5461 tttttttaca cctcttctta ctacatacta ctactttatt ataaattatt atattctaca 5521 tcgttttaca ctttacaatt tttaatgtag ttaaacaatt acaaaaaaag aaggccgttt 5581 ttatatacaa aacaaatatt tttagctttt atgaagagat ttttttttat aatttaattt 5641 gtttctttcc ttctgtgtat attacttaaa aaaaaacaaa caaacaaaac aaaaaagatt 5701 ttacagtaga atttaaagtt gcatatttcc atatacgcca aaaaaattta tgatattttt 5761 cttgtatacg gaaaggttgc ccttttagat tcgacgatat taattatgag atggaacgga 5821 acacacacag acacatacac atatacataa ttgccacaag acatctgaaa gaaagaaaga 5881 aaaaaaaaca catgttcttt tcgaaacaaa tctcaagccc ttacaaatac aattataata 5941 ttttgatctc tttctattca atttttttta tttaatatcc aaacatcatt attttatttc 6001 atagaacaat ttgaaatttt gagaaaaatt aaatactttt ttttttcttt tttaaatttg 6061 cctttgtaaa gaacgaaaac ttaaaacaaa atattaaata ttttttattt tttcaaaaac 6121 gctgcaatgg tttacaataa actgaacaca attcttgcaa aagaataata gcaaacaaga 6181 atcaacttaa taaatattgt tatttaattt ttttacattt ttttttgtta cgttttcctt 6241 ttttatgata atttaaaatc aaaagaaaaa tgtatttact ttgatgaaaa ctatttacat 6301 acatacatac cgctgttttc atgaagaaat gtatgttaat ttttatttta gccaacacat 6361 tatattcctt ttttttaatt aattaataca tacttataaa ataataattt ccccacgtta 6421 ttttttaaat aaggctggtt ttccaagaca ttatttttat ttactcactc acttgtgtgt 6481 tatctatata catataatat atatacatat attttatttt taattaaaaa taaaaaaaaa 6541 cattgttaac tttttaaatt attaattaac tacacatcta caaactattt acataaaaaa 6601 aaacaaacaa aaaacgaaga aaaaaaaaaa acaaaaatat ttaaacatgt tttaataatg 6661 ttaaatattt taacacaaca aaacaacaac aaattttaaa cgtgaaacaa agaaaaccct 6721 tataatttat aatacaatac catatatata tatatacata aaatgtttaa ttttatttta 6781 acttacgtgt ttcaaatatt ttcttgtcat tttgtatttt tttttttaat tttttatatt 6841 tatttaattt ttgtttcaac caagaaaaaa tatacatata gatatacata tatgattttc 6901 aaatgtattt ataaaatttc cttttttcgt tttgtaaaca ttataataca ttttttttgt 6961 tctactaatg ctaataaatt aaaacgaacg aaaacaaaga aaattgaact agcttaaaga 7021 aacaaaacaa aacaaaaaaa aaaaaacata ttttgtgcgc gaggctgtag tttttaattg 7081 atgaaaagca aaagaagaga aaaaggaata agaaaaacaa aaacaaaaca caaaataaaa 7141 atcaatacca atcatacctt tttactacta tataagcatt aacaacgatt acaagaatta 7201 cccaaaagca atccttttta agaaaaatac atacaaacat ggcatacata tataatttta 7261 agtagtacca aatgtagcgt ttctcttcga aattttaaac aacacataca cacacacaga 7321 aacatcagac ttataaaatt ttgaaaccgt cgcgtcgtca ttattttcgt atagactaag 7381 attagtttgc ttttgtgttg ttataaccta tagtttttat ttattataaa atacttttta 7441 ttatgtcata tgtaattttg tctttaacaa aagagcaaag tggttagtta gtctctctct 7501 ctttctcatc aaaaaaaaaa ggcaaatttt catgtacatt tgtaatgttt ggctgttcaa 7561 agatgtagtg tttttttatt attattataa ttatctttat ttttaaactt agtcatgaat 7621 tttttaggga tttttatttt aat