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LOCUS XM_059366416 7647 bp mRNA linear INV 02-SEP-2023 (LOC106080759), transcript variant X2, mRNA. ACCESSION XM_059366416 VERSION XM_059366416.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7647 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7647 /gene="LOC106080759" /note="B-box type zinc finger protein ncl-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106080759" CDS 1318..4848 /gene="LOC106080759" /codon_start=1 /product="transcription intermediary factor 1-alpha isoform X1" /protein_id="XP_059222399.1" /db_xref="GeneID:106080759" /translation="MATLEDFAPHILNSTTVTSNTSSATTNIATTADSSSCSFSTVLD SSSITAVAKALEASSFIATPSSASTVDSIVDKLVNSLDLNDTLIANGGCNPIAKDIKS ISSRSSSVAGSLTLGGLGGGNMFSEVFESNVGSELESGSLEDTSGSLCEGDVDKNCKI CSSRLQSPRVLSCLHVFCESCLCKLLNEDSSGGSLSSSSSTSSVGGELIPVSNSCGKS QIKCPVCKQITSVGPKGVKSLTCDYILTNILDLATIESEQLHCTSCKSKENAISRCND CANFLCSGCDNAHKYMRCFENHEVVKLEDLQKTSDGDKPLIIHKPLYCNVHTSENLKY YCFNCQIPVCNDCLIADHKGSEHHYDIIALAEKSVRGDVENLMKEAKSKVQYCDEADA NLSSALTELQTQHDSARDLIQETFENYKKVIEKCRDQALVELKKLHSERVLKIMDLMQ NIQNTMCKIDNTCKFTNRVLEQANAAEFLSMKKLIASQFINMINTTPKCDINYSLTFD TKPDKFEQLAQDTFGKFRTESTPPSPKESTPPPTLPGMPPNMINGRVGGSCSGGSGGA MNCSNSSQSQMASSVTASSPISLPTSMQSSFDGDIYALGNGFMMSNVLTPDSPPQGQS VLPPHHHQLQHQNSTSSHHSSVSGFNGIGSIASGNGNNLNNNMNNTSPAFNGSLGNTP LGSGPNGSLMGNNGLNGLNNSGPPAGMNALNNPLNNSLTAALNGPLGGNAGVAAVPPP GGFNSILEYNLSRLASLTENTPDTLNDPLVGSPSGPTNQSVVPAANAQNQPITLADIL SGDQRAFNNLQALAKLGLNNNDFHTDITSNQLLTNGPSPTGFDCLLPDYCLSTAPSPS LPNLPPLCPGGGAGGSVDDMSIASFHAPQQAQPTTTSIITGRNKATPMQIRCKFGSLG TSKGQFNSPHGFCLGVDEEIIVADTNNHRIEIFDKSGNLKFYFGVPGKEEGQLWYPRK VAVMHTNGKFVVCDRGNERSRMQIFSKSGHFMRKIAIRYIDIVAGLAVTSKGHIVAVD SVSPTVFVISEDGELVRWFDCSDYMREPSDIAIRDNDFYVCDFKGHCVAVFHEDGTFQ YRIGNEKVTCFPNGIDISNAGDILIGDSHGNRFHVACYSRDGVLQSEFECPHVKVSRC CGLKITSEGYVVTLAKNNHHVLVLNTLYVQ" ORIGIN 1 attcgtaaca aacttctcaa ttgtacgaaa agtgattttg aaaaattgtt agtgaagaaa 61 aattcttgac taccacgagc tcgagccgat tcgtggatgt agaaaagtgt gagctctgaa 121 caagcagcag gaatacaaag gatatacggt tttgaacact attgcagcgg agatcaatca 181 atcaaccaag agcgggaaat attttctttc tatcctgaaa acaagttgga ctataaagcg 241 gacaagaggt agcgttttgt gaacattgta attcgttaca tttttttgct attcgtcgtc 301 ataaccgcct cagtgtgcaa caccctgata taacaacaat aacaacaaca acaacaacat 361 aaccgccagt catcgtcgaa cgtttgtgag ttggccaagt ctgcgaatta cctaggcctt 421 ttgtggtggg atcaaaggca aattgttttt gcaagcgaag acgtagtagc atcgttataa 481 catcatattt gcaatacaac aataactaca actatttaaa ataaacatat atatgtacac 541 acttcacttc aaacttagag agtaatttaa agaaaaaaca aaaaaaaaaa caaaaatatt 601 gcaaatagta acaattttac tacaaaaaca caacatattt caaatatttc gtgattcttt 661 caaacaacca aacaaaaata caaaggaaaa aacaaataga aaaaactcaa ttctaaaaca 721 ccatttaaaa aaagaaaaac taaaattgca gcaaatagta ataataatga taatagagaa 781 ccaaacccat taaatgatat taatcaacaa tatttaaaaa caatcaaacc acaatattta 841 atgaatattt atcaatgaag ctttttacac aatatttgct ctaacgaata aagaaaaact 901 aactaaagaa gtaagcataa taacgaaact caattgaaac gcgtaaaaat caccaactat 961 agaatcaatc aatagcgtaa aacagacata caaaaacaac cccagtggct tttggcgaaa 1021 aaataaccct gcttcttgaa aatacatcag agattttgaa atcgcaccac cctgcttaat 1081 tggtattttt gaagagcttg tgtacttttt ggtgaacttg tagcaaccac aacaaaacaa 1141 ccaatcaaaa attctccaag gctttagcac atacgtatat cagatcaaaa agaaagacaa 1201 actcgcagag taaataaagg ctatagaagg ggctcagacc tctcagttgc aagcgtttaa 1261 tctccaactt caaattcaaa aagttacact gcgtcacgcg tcatagaggc tttatatatg 1321 gcaaccttag aggattttgc accacatatc ttaaatagca ccaccgtgac ctcaaacacc 1381 tcgtctgcga ccacaaacat tgccactacc gccgactcaa gtagctgctc cttttccacc 1441 gtcttggact cgtcatcgat cacggctgtt gccaaagcat tggaagcttc tagttttata 1501 gcgaccccat ctagcgcttc cactgtggat tcaatagttg acaagttggt caactcgttg 1561 gacttgaacg acaccttaat agcgaacggc ggttgtaatc ccatagcaaa ggatataaaa 1621 agcatttctt ctcgttcttc gtcggttgcc ggcagcttga ccctaggtgg gctgggcggt 1681 ggcaacatgt ttagtgaagt gtttgaaagc aatgtgggct ctgagcttga gtctggttcc 1741 ttggaagaca cgtcgggttc gttgtgtgaa ggcgatgttg ataagaattg caagatttgc 1801 agttcgcgcc tgcagtcgcc tcgtgttcta tcatgccttc atgtcttttg tgagtcatgc 1861 ctctgtaagt tacttaacga agattcctcg ggaggcagtc tttcttcctc atcgtccact 1921 tcttcggtgg gtggggaatt gattcccgtt tccaattctt gcggaaaatc gcagatcaag 1981 tgtccagtat gcaagcaaat cacttcggtt ggtcctaaag gtgtgaaatc tttgacatgc 2041 gattacattt taaccaacat tttggatttg gccaccattg aatcggagca attgcattgt 2101 acctcttgca agagcaagga gaatgcaatt tcccgttgca atgattgtgc caatttcttg 2161 tgcagtggct gcgataatgc ccacaagtat atgcgatgct ttgagaatca cgaagtcgtc 2221 aagttggaag atttgcaaaa aacttcggat ggcgataagc cattgattat ccataagcca 2281 ttgtattgca atgtgcacac atcagagaat ctcaagtatt attgttttaa ttgccaaata 2341 ccggtgtgta atgactgttt gatagctgat cacaagggta gtgaacatca ctatgatatc 2401 atagcgttgg ccgagaaatc cgtgcgaggt gacgttgaga atcttatgaa ggaggccaaa 2461 tcgaaggtgc aatattgcga cgaagcagac gcaaatttat ctagcgctct taccgagtta 2521 caaactcaac atgattcagc acgcgatctc atccaagaga cctttgaaaa ctacaagaag 2581 gttatagaaa agtgtcgcga tcaagccttg gtggaactaa agaaactgca ttctgaaaga 2641 gttttgaaaa ttatggattt aatgcaaaat attcagaaca ccatgtgtaa aatcgataac 2701 acatgcaaat ttaccaatcg cgtattggag caggcaaacg cagctgaatt tctatcaatg 2761 aagaagttga ttgcatctca atttattaac atgattaata caacaccgaa atgtgatatt 2821 aactattcgc taacgtttga tacgaagccg gataagtttg aacaattggc ccaggatact 2881 tttggaaagt tccgcacaga atctactccg ccatcgccaa aagaaagtac cccaccacca 2941 actttgcctg gaatgcctcc gaatatgatt aacggccgcg tcggcggttc atgcagtggc 3001 ggaagcggtg gtgcaatgaa ttgttccaat agctctcaga gtcagatggc cagctcagta 3061 acggccagca gcccaatttc tttgccaact tccatgcaaa gttcctttga tggtgacatc 3121 tatgctttgg gcaatggttt catgatgtct aacgtactta ccccagattc tcctccgcaa 3181 ggtcaatctg tattaccacc acatcaccat caattgcaac atcagaacag cacttcttcc 3241 caccacagca gtgttagtgg ctttaatggc attggttcca tcgcatccgg caatggcaac 3301 aacttaaata acaacatgaa taatacatca cctgcattca atggatctct tggtaacaca 3361 ccactcggtt cgggcccaaa tggctcacta atgggtaaca acggccttaa cggtctcaac 3421 aactctggac ccccggcggg catgaatgcc ttgaataatc ctcttaataa cagtcttact 3481 gctgctctga acggtccttt gggcggaaat gccggcgttg ctgctgtacc accaccaggt 3541 ggctttaata gcattctcga atacaattta tctcgtcttg ccagtcttac tgaaaacaca 3601 ccagacaccc ttaatgaccc tctagtaggc tcgcccagtg gacccaccaa tcaatcagtt 3661 gttccagctg ctaatgcaca aaatcagcca atcactctgg ccgacatttt gtccggtgat 3721 caaagagctt tcaacaattt acaagctctt gctaaattgg ggctaaacaa taatgatttt 3781 cacacagaca ttacaagcaa tcagctatta acgaatggac cctcaccaac tggatttgat 3841 tgtttattac cagattactg cctatccaca gcaccatcac caagcttgcc aaatttgcca 3901 ccattgtgcc ctggtggtgg ggcaggtggt tcggttgatg atatgagcat agctagtttc 3961 catgccccgc aacaagcgca accaactacg acgagcatta ttacgggccg aaataaggca 4021 acaccaatgc aaattcgttg caagtttggt tctttaggta catcgaaggg ccagttcaat 4081 tctccgcatg gcttttgctt gggcgtcgat gaggaaatca ttgtggccga tacgaacaat 4141 catcgcattg aaatttttga caagtcgggt aatttgaaat tttacttcgg agtacctggt 4201 aaggaagaag gtcaattgtg gtatccgcgc aaagttgctg ttatgcacac aaacggcaaa 4261 tttgttgtct gtgatcgtgg caacgaacgt tcacgcatgc agatcttctc aaaaagtggc 4321 cattttatgc gcaaaattgc catacgatac attgatattg ttgctggtct ggcagttaca 4381 tcgaaaggac atatcgttgc cgttgacagt gtttccccta ctgtgtttgt tatatcggaa 4441 gatggtgaat tggtgcgttg gttcgattgc agcgattaca tgcgcgaacc atccgacatt 4501 gccattagag acaacgactt ttacgtttgt gactttaagg gtcactgcgt tgccgtcttt 4561 cacgaggatg gcacattcca atatcgtata ggcaatgaga aggttacatg cttccccaat 4621 ggaatcgata tatcaaatgc tggagatata ttaatcggag attcccatgg taatcgcttc 4681 catgttgctt gctattcgcg tgatggtgtt cttcaatcgg agtttgaatg tccacatgtc 4741 aaggtatccc gttgctgtgg tcttaaaata acatcggagg gttatgttgt gacattggcc 4801 aagaataacc atcatgtttt agtgctcaat acactatatg ttcagtgatt gcaaaaaaag 4861 aaatctctca atgcgagact tgatttatta ccgtatggaa aaactacaac agttagcaaa 4921 tctcaccaaa cacaccaaca acaacaacaa acgcaatcgc atcttcaaca acagcagcag 4981 cagcagcacc aacaccatca tcatcaatcg ttgcgtgcta cagtttttcc agcaatgaat 5041 ggcagtcatt gtgcaaacac tccaataacg gtagctgcta cagctgcagc caattcaatc 5101 ggagcaacat caggcacagc cgcagtagta acaccaacag catcatcatc agcaacagca 5161 gcagcagcaa gtacatctgt aaacttcaat ttgcctttga ttagcaagca tcagctttat 5221 aaaactaata ctgaaaatag tgataatggt gaacaaacaa aattacaact tatagattat 5281 gatgaaattt aaggcaataa tatttttgta ttattttctt tgaaaaaaca gaaaaagcaa 5341 aaaaaaaaaa aaacatattt ttaacatgat gatgataaca acgcctccaa agatacgacg 5401 aaattttgaa tttacgccgc caaaagccaa aaagaaaaaa aaacgtaaaa acaaaacaat 5461 ttattttttt tacacctctt cttactacat actactactt tattataaat tattatattc 5521 tacatcgttt tacactttac aatttttaat gtagttaaac aattacaaaa aaagaaggcc 5581 gtttttatat acaaaacaaa tatttttagc ttttatgaag agattttttt ttataattta 5641 atttgtttct ttccttctgt gtatattact taaaaaaaaa caaacaaaca aaacaaaaaa 5701 gattttacag tagaatttaa agttgcatat ttccatatac gccaaaaaaa tttatgatat 5761 ttttcttgta tacggaaagg ttgccctttt agattcgacg atattaatta tgagatggaa 5821 cggaacacac acagacacat acacatatac ataattgcca caagacatct gaaagaaaga 5881 aagaaaaaaa aacacatgtt cttttcgaaa caaatctcaa gcccttacaa atacaattat 5941 aatattttga tctctttcta ttcaattttt tttatttaat atccaaacat cattatttta 6001 tttcatagaa caatttgaaa ttttgagaaa aattaaatac tttttttttt cttttttaaa 6061 tttgcctttg taaagaacga aaacttaaaa caaaatatta aatatttttt attttttcaa 6121 aaacgctgca atggtttaca ataaactgaa cacaattctt gcaaaagaat aatagcaaac 6181 aagaatcaac ttaataaata ttgttattta atttttttac attttttttt gttacgtttt 6241 ccttttttat gataatttaa aatcaaaaga aaaatgtatt tactttgatg aaaactattt 6301 acatacatac ataccgctgt tttcatgaag aaatgtatgt taatttttat tttagccaac 6361 acattatatt cctttttttt aattaattaa tacatactta taaaataata atttccccac 6421 gttatttttt aaataaggct ggttttccaa gacattattt ttatttactc actcacttgt 6481 gtgttatcta tatacatata atatatatac atatatttta tttttaatta aaaataaaaa 6541 aaaacattgt taacttttta aattattaat taactacaca tctacaaact atttacataa 6601 aaaaaaacaa acaaaaaacg aagaaaaaaa aaaaacaaaa atatttaaac atgttttaat 6661 aatgttaaat attttaacac aacaaaacaa caacaaattt taaacgtgaa acaaagaaaa 6721 cccttataat ttataataca ataccatata tatatatata cataaaatgt ttaattttat 6781 tttaacttac gtgtttcaaa tattttcttg tcattttgta tttttttttt taatttttta 6841 tatttattta atttttgttt caaccaagaa aaaatataca tatagatata catatatgat 6901 tttcaaatgt atttataaaa tttccttttt tcgttttgta aacattataa tacatttttt 6961 ttgttctact aatgctaata aattaaaacg aacgaaaaca aagaaaattg aactagctta 7021 aagaaacaaa acaaaacaaa aaaaaaaaaa catattttgt gcgcgaggct gtagttttta 7081 attgatgaaa agcaaaagaa gagaaaaagg aataagaaaa acaaaaacaa aacacaaaat 7141 aaaaatcaat accaatcata cctttttact actatataag cattaacaac gattacaaga 7201 attacccaaa agcaatcctt tttaagaaaa atacatacaa acatggcata catatataat 7261 tttaagtagt accaaatgta gcgtttctct tcgaaatttt aaacaacaca tacacacaca 7321 cagaaacatc agacttataa aattttgaaa ccgtcgcgtc gtcattattt tcgtatagac 7381 taagattagt ttgcttttgt gttgttataa cctatagttt ttatttatta taaaatactt 7441 tttattatgt catatgtaat tttgtcttta acaaaagagc aaagtggtta gttagtctct 7501 ctctctttct catcaaaaaa aaaaggcaaa ttttcatgta catttgtaat gtttggctgt 7561 tcaaagatgt agtgtttttt tattattatt ataattatct ttatttttaa acttagtcat 7621 gaatttttta gggattttta ttttaat