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LOCUS XM_059366404 4758 bp mRNA linear INV 02-SEP-2023 transcript variant X14, mRNA. ACCESSION XM_059366404 VERSION XM_059366404.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4758 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4758 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 1312..4077 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222387.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtgca acagcaaaaa 301 aagacaataa gaaatttgga aataaaaaga aacaacaaca actaaaataa aataatagca 361 aatagcaaaa tgttcgatat ccgttgagtt cctataacaa atggctgata aacaacaacg 421 acaacaacat accacaacat aaataaaata acaactacag cacgtacaac caacaacatc 481 tctctctctc tctctctctc tgtctctctc gctcaacaca ctctcatagc aacaccaaaa 541 aaatcaaatc aacaaaagaa aactctgcaa agcaaaataa ataaataaaa caacaactac 601 aaaagcagtc tctctgacaa caacaaaaga aaaagcagcc gcatccatag gccaccagac 661 aatgataatg tcgttgataa tgttgccacc tgccaccttt aaagatactg tctacaaaac 721 attgccaatg ttgttacgag cctaaaggga tatcctcaaa aaaaaaaaca aacagcagcg 781 cagcagttgt catctgtcta cttcgacttc ttcgtcttct tctttcttta tctttcccat 841 attcagtctt tcgcacaaac catacactct cgctcacttc tatgccaaag gcaaggctga 901 taaacaaatg ttggtgggat ttaatatttt caacagaaat tttcttactc tgctttaaaa 961 gacttcttcg catctcaatc tcttatcctg ttttatggac agatttcctg ttggcccaac 1021 attgcgtgcg gttgtgttga cccaatttca tcacttcaac tagacacagc catccaagac 1081 atgaaaagaa aagctcaaat tcaaaaataa aaccaaaggt cttccaagta taacaaaaac 1141 tagaaacaac atcctgtaaa actcaataaa aaaaaaacaa aaacaacaaa aaaccaaggc 1201 aaaccacaac gactaacaac aattgcaaaa ggcaaacaga gaaacaccat tctcatcaat 1261 aataacaaca acgaacaacg gagtaacata caaaagcctt tttcacaagg catgtttata 1321 cctgattcac tgcgtagctg tatgatcgag acggacgtta actcttatct gcaaacatca 1381 tcctcaggac aggtgctgaa cttatacgtg gatgagtttc atccgttcat tgaagccctg 1441 ttgccatatg tcaaatcatt ttcgtactcg tggttcaact tacaagcagc caagcgtaaa 1501 tactacaaga aacatgagaa acgcatgtca ttggaggagg agcgacattg caaggatgaa 1561 ctacagaacg aaaaggctga ggttaaacag aaatgggctt cccgtttgct gggaaaatta 1621 cgcaaagaca taacccaaga atgccgcgaa gactttgtac agtccataac gggcaaacgc 1681 aaatcgatat gtgttctctc caatcccgat cagaaaggca aaatgcgtcg catcgattgt 1741 ttgcggcagg cggacaaggt ttggcggctc gatctagtca tggtcatact cttcaaggcc 1801 atacctttgg agagcaccga tggcgaacgt ctggaaaaat ctcccgaatg catacacccg 1861 gctttgtgtg tcaatcccta tcacatcaat gtctcagtgc gtgaactcga tttgtatttg 1921 gccaatttca tcaataccca cgatccattg agtagtccta cgcccacaac accgcctccg 1981 ggcacaccct caacgccttc gctcatgctc tatagcaatg agcataatgc cagcaccaac 2041 aacaacaaca ccaatagctc agacaataag aaacacatag aagaagagcg caagaacaaa 2101 gacgtagaca acacaccatt tgcaggctac agccacaatc cctacaatgg tgttgtgtgc 2161 aatgatataa ttttggccac tggtgttttc tcttccaagg agctttggaa gctgtcaaaa 2221 gagaggaaca actctttcat tttagcttcc atattggaag aaaccgccaa tgatctcatc 2281 caggctagct cgatcaaatt ggagcatccg gcggctgcct atgagtgcaa tacatatcaa 2341 atgtcagcct caggagctcc actgggttcg gtggtgggag gagttaacag tgcgggtatg 2401 gtgacagcaa gtgatggcag ggcctcggtt agtgcttcca tggtattgcc ctcgggttac 2461 agcattgact ttgtggatcc acgcagcagc atgcatctct caaactcctc tctgctgagg 2521 gcctcttcgg ctaccacctg caaaagtgat cccaatggct cgccacagga tggcagcagt 2581 ttctctgtga tattgaggca aaatgaagac aatggcagca atggcggagc cgctgccagc 2641 aataatgccg atgatcctgc tctacagagg tacacgccca ccagcaatag agtgttgttg 2701 agtatggggc aaatgaggcc aggagaagtg cttatgcaac acaatgtcag ctcttccttg 2761 gtgccaaact cggttagccc tgctttgtat tatccccagc agaacagtcc caactccaat 2821 gctaatgagg ccgccgaaga agcccatcat cagcaacacc atcatcagca gcaacaacac 2881 caccagcatc atcatcatca acatcaactg catcaggcat ccgctacacc caaatatgcc 2941 accgagttgg tcaaccacgg tcaggatatg tcggaatttg tggcttatgt ctgccaggat 3001 actgggggta tacatgccgc caatgcgggc gatccttccg acttacatgt gcatcatcac 3061 caaacgtctt cccattttca attgcagcat gctgctgccg ccgctgctgt gggtcggggt 3121 cccaagattt cagcagtctc ggctgccgca gctgcggcac attaccagca atacagcacc 3181 atgttgccac caccaccgct accgcctatg gcccggccgg tggccataat acgttcgacg 3241 ggggatttaa ccatggtggc gtcaccaccc tcatctgccg ccatatcacc gccccctctg 3301 acgagtgtat cctcggctgg tgattcgcca cgacatcatc accagagttt gcagcatcat 3361 catccttcct cacatcatca tcatcaccac catcatcatg gacatcagca gcagcaacag 3421 caacatcatc aggcacagca gcaacacacc actatcgatc acacctcgaa ttccagcagt 3481 ggcctaagct caatgacttc gaaactaacc aacacaaccg cctccaccag ttccgcccaa 3541 gagtctacaa ccagcaccat aactgtgggc agcaataata attcttccga tttggtggtg 3601 gcctctacag cgtcggcatc accgcctcca gcacccacac aatcgccgca tgcacacatc 3661 atagatgtgg caagatgtaa gacatcgccc acttcatcgg cggcggcagc agttgcggtg 3721 tccacaccca catcggcgtt gacgcgtata tcggcccaac cgtatcccaa tacgaatggg 3781 cgtgaatact ttaatcattt ccatacacaa accacaccgc tcttgggtta taccaccatg 3841 tcgggggtca tcagtcctac aaatcttagc ctctattcat ctacaacggg tgttacatcg 3901 catcgcacca cccccaggtc acgctggaat tcctcttttc tttccatgga agatgatttc 3961 aacatgatgt cccacacact gacaagcaca aatccagaag ccactccagt catacttatg 4021 gaagattctg gtcgttacag tgatgaatat gtcacaagtc gtgattatgt tacatgatta 4081 taaatgcatc aatcgtttta tatgccctac tagaactgca atcacagcaa cagacagcaa 4141 caataataac aaacaaacca aaactgtaag aaataataac actactattc tatacataca 4201 tatatatata tacatacatc tattctatac tgtaactata gatacaacta gaatatttat 4261 atataaaaaa attattatta ttatttatta tttttatata attaagagaa gagagaaaaa 4321 acaaaaacac ttgttttagg aaatttattt gcaagcaaac atgttgaaat gtttgagagg 4381 aaatattata tacacatata tagctcaagg caaatcccta agcagttata gatcatgaaa 4441 aaagtcggag ttcgaggcaa ttggatacac caatgaagag aaagtataaa gttcaaatga 4501 aaattcaatt tgaagctaag atttcattgt ttttggtatt gtttttattt aatgcttgaa 4561 gaagataata tagctcaagg tcttagctgt ttttaacaat ttgaatctat ttcctaagtt 4621 aattaaatca aaagttttag ggaaaaaact gatttattaa caaaatttat ataaatcata 4681 cgcaacctgg gcaaaaaatc agtttttaat taatatctta ttttaaacgg atttttgtat 4741 ggtttttctt tgttttat