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LOCUS XM_059366403 4688 bp mRNA linear INV 02-SEP-2023 transcript variant X13, mRNA. ACCESSION XM_059366403 VERSION XM_059366403.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4688 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4688 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 1242..4007 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222386.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cacaatagca acaataaaac aactgtatgc 181 acaaaaataa attttaattt tttataaaaa aatgtaagca acagcaaaaa aagacaataa 241 gaaatttgga aataaaaaga aacaacaaca actaaaataa aataatagca aatagcaaaa 301 tgttcgatat ccgttgagtt cctataacaa atggctgata aacaacaacg acaacaacat 361 accacaacat aaataaaata acaactacag cacgtacaac caacaacatc tctctctctc 421 tctctctctc tgtctctctc gctcaacaca ctctcatagc aacaccaaaa aaatcaaatc 481 aacaaaagaa aactctgcaa agcaaaataa ataaataaaa caacaactac aaaagcagtc 541 tctctgacaa caacaaaaga aaaagcagcc gcatccatag gccaccagac aatgataatg 601 tcgttgataa tgttgccacc tgccaccttt aaagatactg tctacaaaac attgccaatg 661 ttgttacgag cctaaaggga tatcctcaaa aaaaaaaaca aacagcagcg cagcagttgt 721 catctgtcta cttcgacttc ttcgtcttct tctttcttta tctttcccat attcagtctt 781 tcgcacaaac catacactct cgctcacttc tatgccaaag gcaaggctga taaacaaatg 841 ttggtgggat ttaatatttt caacagaaat tttcttactc tgctttaaaa gacttcttcg 901 catctcaatc tcttatcctg ttttatggac agatttcctg ttggcccaac attgcgtgcg 961 gttgtgttga cccaatttca tcacttcaac tagacacagc catccaagac atgaaaagaa 1021 aagctcaaat tcaaaaataa aaccaaaggt cttccaagta taacaaaaac tagaaacaac 1081 atcctgtaaa actcaataaa aaaaaaacaa aaacaacaaa aaaccaaggc aaaccacaac 1141 gactaacaac aattgcaaaa ggcaaacaga gaaacaccat tctcatcaat aataacaaca 1201 acgaacaacg gagtaacata caaaagcctt tttcacaagg catgtttata cctgattcac 1261 tgcgtagctg tatgatcgag acggacgtta actcttatct gcaaacatca tcctcaggac 1321 aggtgctgaa cttatacgtg gatgagtttc atccgttcat tgaagccctg ttgccatatg 1381 tcaaatcatt ttcgtactcg tggttcaact tacaagcagc caagcgtaaa tactacaaga 1441 aacatgagaa acgcatgtca ttggaggagg agcgacattg caaggatgaa ctacagaacg 1501 aaaaggctga ggttaaacag aaatgggctt cccgtttgct gggaaaatta cgcaaagaca 1561 taacccaaga atgccgcgaa gactttgtac agtccataac gggcaaacgc aaatcgatat 1621 gtgttctctc caatcccgat cagaaaggca aaatgcgtcg catcgattgt ttgcggcagg 1681 cggacaaggt ttggcggctc gatctagtca tggtcatact cttcaaggcc atacctttgg 1741 agagcaccga tggcgaacgt ctggaaaaat ctcccgaatg catacacccg gctttgtgtg 1801 tcaatcccta tcacatcaat gtctcagtgc gtgaactcga tttgtatttg gccaatttca 1861 tcaataccca cgatccattg agtagtccta cgcccacaac accgcctccg ggcacaccct 1921 caacgccttc gctcatgctc tatagcaatg agcataatgc cagcaccaac aacaacaaca 1981 ccaatagctc agacaataag aaacacatag aagaagagcg caagaacaaa gacgtagaca 2041 acacaccatt tgcaggctac agccacaatc cctacaatgg tgttgtgtgc aatgatataa 2101 ttttggccac tggtgttttc tcttccaagg agctttggaa gctgtcaaaa gagaggaaca 2161 actctttcat tttagcttcc atattggaag aaaccgccaa tgatctcatc caggctagct 2221 cgatcaaatt ggagcatccg gcggctgcct atgagtgcaa tacatatcaa atgtcagcct 2281 caggagctcc actgggttcg gtggtgggag gagttaacag tgcgggtatg gtgacagcaa 2341 gtgatggcag ggcctcggtt agtgcttcca tggtattgcc ctcgggttac agcattgact 2401 ttgtggatcc acgcagcagc atgcatctct caaactcctc tctgctgagg gcctcttcgg 2461 ctaccacctg caaaagtgat cccaatggct cgccacagga tggcagcagt ttctctgtga 2521 tattgaggca aaatgaagac aatggcagca atggcggagc cgctgccagc aataatgccg 2581 atgatcctgc tctacagagg tacacgccca ccagcaatag agtgttgttg agtatggggc 2641 aaatgaggcc aggagaagtg cttatgcaac acaatgtcag ctcttccttg gtgccaaact 2701 cggttagccc tgctttgtat tatccccagc agaacagtcc caactccaat gctaatgagg 2761 ccgccgaaga agcccatcat cagcaacacc atcatcagca gcaacaacac caccagcatc 2821 atcatcatca acatcaactg catcaggcat ccgctacacc caaatatgcc accgagttgg 2881 tcaaccacgg tcaggatatg tcggaatttg tggcttatgt ctgccaggat actgggggta 2941 tacatgccgc caatgcgggc gatccttccg acttacatgt gcatcatcac caaacgtctt 3001 cccattttca attgcagcat gctgctgccg ccgctgctgt gggtcggggt cccaagattt 3061 cagcagtctc ggctgccgca gctgcggcac attaccagca atacagcacc atgttgccac 3121 caccaccgct accgcctatg gcccggccgg tggccataat acgttcgacg ggggatttaa 3181 ccatggtggc gtcaccaccc tcatctgccg ccatatcacc gccccctctg acgagtgtat 3241 cctcggctgg tgattcgcca cgacatcatc accagagttt gcagcatcat catccttcct 3301 cacatcatca tcatcaccac catcatcatg gacatcagca gcagcaacag caacatcatc 3361 aggcacagca gcaacacacc actatcgatc acacctcgaa ttccagcagt ggcctaagct 3421 caatgacttc gaaactaacc aacacaaccg cctccaccag ttccgcccaa gagtctacaa 3481 ccagcaccat aactgtgggc agcaataata attcttccga tttggtggtg gcctctacag 3541 cgtcggcatc accgcctcca gcacccacac aatcgccgca tgcacacatc atagatgtgg 3601 caagatgtaa gacatcgccc acttcatcgg cggcggcagc agttgcggtg tccacaccca 3661 catcggcgtt gacgcgtata tcggcccaac cgtatcccaa tacgaatggg cgtgaatact 3721 ttaatcattt ccatacacaa accacaccgc tcttgggtta taccaccatg tcgggggtca 3781 tcagtcctac aaatcttagc ctctattcat ctacaacggg tgttacatcg catcgcacca 3841 cccccaggtc acgctggaat tcctcttttc tttccatgga agatgatttc aacatgatgt 3901 cccacacact gacaagcaca aatccagaag ccactccagt catacttatg gaagattctg 3961 gtcgttacag tgatgaatat gtcacaagtc gtgattatgt tacatgatta taaatgcatc 4021 aatcgtttta tatgccctac tagaactgca atcacagcaa cagacagcaa caataataac 4081 aaacaaacca aaactgtaag aaataataac actactattc tatacataca tatatatata 4141 tacatacatc tattctatac tgtaactata gatacaacta gaatatttat atataaaaaa 4201 attattatta ttatttatta tttttatata attaagagaa gagagaaaaa acaaaaacac 4261 ttgttttagg aaatttattt gcaagcaaac atgttgaaat gtttgagagg aaatattata 4321 tacacatata tagctcaagg caaatcccta agcagttata gatcatgaaa aaagtcggag 4381 ttcgaggcaa ttggatacac caatgaagag aaagtataaa gttcaaatga aaattcaatt 4441 tgaagctaag atttcattgt ttttggtatt gtttttattt aatgcttgaa gaagataata 4501 tagctcaagg tcttagctgt ttttaacaat ttgaatctat ttcctaagtt aattaaatca 4561 aaagttttag ggaaaaaact gatttattaa caaaatttat ataaatcata cgcaacctgg 4621 gcaaaaaatc agtttttaat taatatctta ttttaaacgg atttttgtat ggtttttctt 4681 tgttttat