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LOCUS XM_059366402 5603 bp mRNA linear INV 02-SEP-2023 transcript variant X12, mRNA. ACCESSION XM_059366402 VERSION XM_059366402.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5603 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5603 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 2157..4922 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222385.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacgtac 721 ggaacgggaa aaaaatcaca aaacgaaaac aaaaataagt cgcacacgat tcgaaaaaaa 781 taaaacaaaa acaaaaacaa caagaagcag aacgaatttt cttttttcct tctttttctg 841 agtgctcgac tgcctgcttg cctgcctgcc tgtcgtcgtc tgtctgtctg tcgtctcttc 901 ttttgcgttt gaacaaaaaa attgtgtaac aaaaattcaa aataaatttt ttcaccaaaa 961 cccatatccc tttcaacgaa ttttaaaacg aaaaaaatcc actgtaaaag gaaaatttgt 1021 gcaaaaaagg gcttcttagc caggaaatgt gaaatgtgaa aagcaaatgg agttgacagt 1081 gattggcaaa tgtcggtgca agaaatcgat aatgggcaaa gcaagcggcc caaccaagtc 1141 aaaaaaagac aataagaaat ttggaaataa aaagaaacaa caacaactaa aataaaataa 1201 tagcaaatag caaaatgttc gatatccgtt gagttcctat aacaaatggc tgataaacaa 1261 caacgacaac aacataccac aacataaata aaataacaac tacagcacgt acaaccaaca 1321 acatctctct ctctctctct ctctctgtct ctctcgctca acacactctc atagcaacac 1381 caaaaaaatc aaatcaacaa aagaaaactc tgcaaagcaa aataaataaa taaaacaaca 1441 actacaaaag cagtctctct gacaacaaca aaagaaaaag cagccgcatc cataggccac 1501 cagacaatga taatgtcgtt gataatgttg ccacctgcca cctttaaaga tactgtctac 1561 aaaacattgc caatgttgtt acgagcctaa agggatatcc tcaaaaaaaa aaacaaacag 1621 cagcgcagca gttgtcatct gtctacttcg acttcttcgt cttcttcttt ctttatcttt 1681 cccatattca gtctttcgca caaaccatac actctcgctc acttctatgc caaaggcaag 1741 gctgataaac aaatgttggt gggatttaat attttcaaca gaaattttct tactctgctt 1801 taaaagactt cttcgcatct caatctctta tcctgtttta tggacagatt tcctgttggc 1861 ccaacattgc gtgcggttgt gttgacccaa tttcatcact tcaactagac acagccatcc 1921 aagacatgaa aagaaaagct caaattcaaa aataaaacca aaggtcttcc aagtataaca 1981 aaaactagaa acaacatcct gtaaaactca ataaaaaaaa aacaaaaaca acaaaaaacc 2041 aaggcaaacc acaacgacta acaacaattg caaaaggcaa acagagaaac accattctca 2101 tcaataataa caacaacgaa caacggagta acatacaaaa gcctttttca caaggcatgt 2161 ttatacctga ttcactgcgt agctgtatga tcgagacgga cgttaactct tatctgcaaa 2221 catcatcctc aggacaggtg ctgaacttat acgtggatga gtttcatccg ttcattgaag 2281 ccctgttgcc atatgtcaaa tcattttcgt actcgtggtt caacttacaa gcagccaagc 2341 gtaaatacta caagaaacat gagaaacgca tgtcattgga ggaggagcga cattgcaagg 2401 atgaactaca gaacgaaaag gctgaggtta aacagaaatg ggcttcccgt ttgctgggaa 2461 aattacgcaa agacataacc caagaatgcc gcgaagactt tgtacagtcc ataacgggca 2521 aacgcaaatc gatatgtgtt ctctccaatc ccgatcagaa aggcaaaatg cgtcgcatcg 2581 attgtttgcg gcaggcggac aaggtttggc ggctcgatct agtcatggtc atactcttca 2641 aggccatacc tttggagagc accgatggcg aacgtctgga aaaatctccc gaatgcatac 2701 acccggcttt gtgtgtcaat ccctatcaca tcaatgtctc agtgcgtgaa ctcgatttgt 2761 atttggccaa tttcatcaat acccacgatc cattgagtag tcctacgccc acaacaccgc 2821 ctccgggcac accctcaacg ccttcgctca tgctctatag caatgagcat aatgccagca 2881 ccaacaacaa caacaccaat agctcagaca ataagaaaca catagaagaa gagcgcaaga 2941 acaaagacgt agacaacaca ccatttgcag gctacagcca caatccctac aatggtgttg 3001 tgtgcaatga tataattttg gccactggtg ttttctcttc caaggagctt tggaagctgt 3061 caaaagagag gaacaactct ttcattttag cttccatatt ggaagaaacc gccaatgatc 3121 tcatccaggc tagctcgatc aaattggagc atccggcggc tgcctatgag tgcaatacat 3181 atcaaatgtc agcctcagga gctccactgg gttcggtggt gggaggagtt aacagtgcgg 3241 gtatggtgac agcaagtgat ggcagggcct cggttagtgc ttccatggta ttgccctcgg 3301 gttacagcat tgactttgtg gatccacgca gcagcatgca tctctcaaac tcctctctgc 3361 tgagggcctc ttcggctacc acctgcaaaa gtgatcccaa tggctcgcca caggatggca 3421 gcagtttctc tgtgatattg aggcaaaatg aagacaatgg cagcaatggc ggagccgctg 3481 ccagcaataa tgccgatgat cctgctctac agaggtacac gcccaccagc aatagagtgt 3541 tgttgagtat ggggcaaatg aggccaggag aagtgcttat gcaacacaat gtcagctctt 3601 ccttggtgcc aaactcggtt agccctgctt tgtattatcc ccagcagaac agtcccaact 3661 ccaatgctaa tgaggccgcc gaagaagccc atcatcagca acaccatcat cagcagcaac 3721 aacaccacca gcatcatcat catcaacatc aactgcatca ggcatccgct acacccaaat 3781 atgccaccga gttggtcaac cacggtcagg atatgtcgga atttgtggct tatgtctgcc 3841 aggatactgg gggtatacat gccgccaatg cgggcgatcc ttccgactta catgtgcatc 3901 atcaccaaac gtcttcccat tttcaattgc agcatgctgc tgccgccgct gctgtgggtc 3961 ggggtcccaa gatttcagca gtctcggctg ccgcagctgc ggcacattac cagcaataca 4021 gcaccatgtt gccaccacca ccgctaccgc ctatggcccg gccggtggcc ataatacgtt 4081 cgacggggga tttaaccatg gtggcgtcac caccctcatc tgccgccata tcaccgcccc 4141 ctctgacgag tgtatcctcg gctggtgatt cgccacgaca tcatcaccag agtttgcagc 4201 atcatcatcc ttcctcacat catcatcatc accaccatca tcatggacat cagcagcagc 4261 aacagcaaca tcatcaggca cagcagcaac acaccactat cgatcacacc tcgaattcca 4321 gcagtggcct aagctcaatg acttcgaaac taaccaacac aaccgcctcc accagttccg 4381 cccaagagtc tacaaccagc accataactg tgggcagcaa taataattct tccgatttgg 4441 tggtggcctc tacagcgtcg gcatcaccgc ctccagcacc cacacaatcg ccgcatgcac 4501 acatcataga tgtggcaaga tgtaagacat cgcccacttc atcggcggcg gcagcagttg 4561 cggtgtccac acccacatcg gcgttgacgc gtatatcggc ccaaccgtat cccaatacga 4621 atgggcgtga atactttaat catttccata cacaaaccac accgctcttg ggttatacca 4681 ccatgtcggg ggtcatcagt cctacaaatc ttagcctcta ttcatctaca acgggtgtta 4741 catcgcatcg caccaccccc aggtcacgct ggaattcctc ttttctttcc atggaagatg 4801 atttcaacat gatgtcccac acactgacaa gcacaaatcc agaagccact ccagtcatac 4861 ttatggaaga ttctggtcgt tacagtgatg aatatgtcac aagtcgtgat tatgttacat 4921 gattataaat gcatcaatcg ttttatatgc cctactagaa ctgcaatcac agcaacagac 4981 agcaacaata ataacaaaca aaccaaaact gtaagaaata ataacactac tattctatac 5041 atacatatat atatatacat acatctattc tatactgtaa ctatagatac aactagaata 5101 tttatatata aaaaaattat tattattatt tattattttt atataattaa gagaagagag 5161 aaaaaacaaa aacacttgtt ttaggaaatt tatttgcaag caaacatgtt gaaatgtttg 5221 agaggaaata ttatatacac atatatagct caaggcaaat ccctaagcag ttatagatca 5281 tgaaaaaagt cggagttcga ggcaattgga tacaccaatg aagagaaagt ataaagttca 5341 aatgaaaatt caatttgaag ctaagatttc attgtttttg gtattgtttt tatttaatgc 5401 ttgaagaaga taatatagct caaggtctta gctgttttta acaatttgaa tctatttcct 5461 aagttaatta aatcaaaagt tttagggaaa aaactgattt attaacaaaa tttatataaa 5521 tcatacgcaa cctgggcaaa aaatcagttt ttaattaata tcttatttta aacggatttt 5581 tgtatggttt ttctttgttt tat