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LOCUS XM_059366401 5747 bp mRNA linear INV 02-SEP-2023 transcript variant X11, mRNA. ACCESSION XM_059366401 VERSION XM_059366401.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5747 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5747 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 2301..5066 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222384.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacgtac 721 ggaacgggaa aaaaatcaca aaacgaaaac aaaaataagt cgcacacgat tcgaaaaaaa 781 taaaacaaaa acaaaaacaa caagaagcag aacgaatttt cttttttcct tctttttctg 841 agtgctcgac tgcctgcttg cctgcctgcc tgtcgtcgtc tgtctgtctg tcgtctcttc 901 ttttgcgttt gaacaaaaaa attgtgtaac aaaaattcaa aataaatttt ttcaccaaaa 961 cccatatccc tttcaacgaa ttttaaaacg aaaaaaatcc actgtaaaag gaaaatttgt 1021 gcaaaaaagg gcttcttagc caggaaatgt gaaatgtgaa aagcaaatgg agttgacagt 1081 gattggcaaa tgtcggtgca agaaatcgat aatgggcaaa gcaagcggcc caaccaagtt 1141 tgttcttcta aaaagcctac ataaataaac aaagaaaatt tataaaaaaa aaaaataaga 1201 aaataaacaa aaacgtcaac ggcaataata atatagaaat tgttttggtt aattattttt 1261 ggtttatcac tcaacgtcat ttacaaaaaa agacaataag aaatttggaa ataaaaagaa 1321 acaacaacaa ctaaaataaa ataatagcaa atagcaaaat gttcgatatc cgttgagttc 1381 ctataacaaa tggctgataa acaacaacga caacaacata ccacaacata aataaaataa 1441 caactacagc acgtacaacc aacaacatct ctctctctct ctctctctct gtctctctcg 1501 ctcaacacac tctcatagca acaccaaaaa aatcaaatca acaaaagaaa actctgcaaa 1561 gcaaaataaa taaataaaac aacaactaca aaagcagtct ctctgacaac aacaaaagaa 1621 aaagcagccg catccatagg ccaccagaca atgataatgt cgttgataat gttgccacct 1681 gccaccttta aagatactgt ctacaaaaca ttgccaatgt tgttacgagc ctaaagggat 1741 atcctcaaaa aaaaaaacaa acagcagcgc agcagttgtc atctgtctac ttcgacttct 1801 tcgtcttctt ctttctttat ctttcccata ttcagtcttt cgcacaaacc atacactctc 1861 gctcacttct atgccaaagg caaggctgat aaacaaatgt tggtgggatt taatattttc 1921 aacagaaatt ttcttactct gctttaaaag acttcttcgc atctcaatct cttatcctgt 1981 tttatggaca gatttcctgt tggcccaaca ttgcgtgcgg ttgtgttgac ccaatttcat 2041 cacttcaact agacacagcc atccaagaca tgaaaagaaa agctcaaatt caaaaataaa 2101 accaaaggtc ttccaagtat aacaaaaact agaaacaaca tcctgtaaaa ctcaataaaa 2161 aaaaaacaaa aacaacaaaa aaccaaggca aaccacaacg actaacaaca attgcaaaag 2221 gcaaacagag aaacaccatt ctcatcaata ataacaacaa cgaacaacgg agtaacatac 2281 aaaagccttt ttcacaaggc atgtttatac ctgattcact gcgtagctgt atgatcgaga 2341 cggacgttaa ctcttatctg caaacatcat cctcaggaca ggtgctgaac ttatacgtgg 2401 atgagtttca tccgttcatt gaagccctgt tgccatatgt caaatcattt tcgtactcgt 2461 ggttcaactt acaagcagcc aagcgtaaat actacaagaa acatgagaaa cgcatgtcat 2521 tggaggagga gcgacattgc aaggatgaac tacagaacga aaaggctgag gttaaacaga 2581 aatgggcttc ccgtttgctg ggaaaattac gcaaagacat aacccaagaa tgccgcgaag 2641 actttgtaca gtccataacg ggcaaacgca aatcgatatg tgttctctcc aatcccgatc 2701 agaaaggcaa aatgcgtcgc atcgattgtt tgcggcaggc ggacaaggtt tggcggctcg 2761 atctagtcat ggtcatactc ttcaaggcca tacctttgga gagcaccgat ggcgaacgtc 2821 tggaaaaatc tcccgaatgc atacacccgg ctttgtgtgt caatccctat cacatcaatg 2881 tctcagtgcg tgaactcgat ttgtatttgg ccaatttcat caatacccac gatccattga 2941 gtagtcctac gcccacaaca ccgcctccgg gcacaccctc aacgccttcg ctcatgctct 3001 atagcaatga gcataatgcc agcaccaaca acaacaacac caatagctca gacaataaga 3061 aacacataga agaagagcgc aagaacaaag acgtagacaa cacaccattt gcaggctaca 3121 gccacaatcc ctacaatggt gttgtgtgca atgatataat tttggccact ggtgttttct 3181 cttccaagga gctttggaag ctgtcaaaag agaggaacaa ctctttcatt ttagcttcca 3241 tattggaaga aaccgccaat gatctcatcc aggctagctc gatcaaattg gagcatccgg 3301 cggctgccta tgagtgcaat acatatcaaa tgtcagcctc aggagctcca ctgggttcgg 3361 tggtgggagg agttaacagt gcgggtatgg tgacagcaag tgatggcagg gcctcggtta 3421 gtgcttccat ggtattgccc tcgggttaca gcattgactt tgtggatcca cgcagcagca 3481 tgcatctctc aaactcctct ctgctgaggg cctcttcggc taccacctgc aaaagtgatc 3541 ccaatggctc gccacaggat ggcagcagtt tctctgtgat attgaggcaa aatgaagaca 3601 atggcagcaa tggcggagcc gctgccagca ataatgccga tgatcctgct ctacagaggt 3661 acacgcccac cagcaataga gtgttgttga gtatggggca aatgaggcca ggagaagtgc 3721 ttatgcaaca caatgtcagc tcttccttgg tgccaaactc ggttagccct gctttgtatt 3781 atccccagca gaacagtccc aactccaatg ctaatgaggc cgccgaagaa gcccatcatc 3841 agcaacacca tcatcagcag caacaacacc accagcatca tcatcatcaa catcaactgc 3901 atcaggcatc cgctacaccc aaatatgcca ccgagttggt caaccacggt caggatatgt 3961 cggaatttgt ggcttatgtc tgccaggata ctgggggtat acatgccgcc aatgcgggcg 4021 atccttccga cttacatgtg catcatcacc aaacgtcttc ccattttcaa ttgcagcatg 4081 ctgctgccgc cgctgctgtg ggtcggggtc ccaagatttc agcagtctcg gctgccgcag 4141 ctgcggcaca ttaccagcaa tacagcacca tgttgccacc accaccgcta ccgcctatgg 4201 cccggccggt ggccataata cgttcgacgg gggatttaac catggtggcg tcaccaccct 4261 catctgccgc catatcaccg ccccctctga cgagtgtatc ctcggctggt gattcgccac 4321 gacatcatca ccagagtttg cagcatcatc atccttcctc acatcatcat catcaccacc 4381 atcatcatgg acatcagcag cagcaacagc aacatcatca ggcacagcag caacacacca 4441 ctatcgatca cacctcgaat tccagcagtg gcctaagctc aatgacttcg aaactaacca 4501 acacaaccgc ctccaccagt tccgcccaag agtctacaac cagcaccata actgtgggca 4561 gcaataataa ttcttccgat ttggtggtgg cctctacagc gtcggcatca ccgcctccag 4621 cacccacaca atcgccgcat gcacacatca tagatgtggc aagatgtaag acatcgccca 4681 cttcatcggc ggcggcagca gttgcggtgt ccacacccac atcggcgttg acgcgtatat 4741 cggcccaacc gtatcccaat acgaatgggc gtgaatactt taatcatttc catacacaaa 4801 ccacaccgct cttgggttat accaccatgt cgggggtcat cagtcctaca aatcttagcc 4861 tctattcatc tacaacgggt gttacatcgc atcgcaccac ccccaggtca cgctggaatt 4921 cctcttttct ttccatggaa gatgatttca acatgatgtc ccacacactg acaagcacaa 4981 atccagaagc cactccagtc atacttatgg aagattctgg tcgttacagt gatgaatatg 5041 tcacaagtcg tgattatgtt acatgattat aaatgcatca atcgttttat atgccctact 5101 agaactgcaa tcacagcaac agacagcaac aataataaca aacaaaccaa aactgtaaga 5161 aataataaca ctactattct atacatacat atatatatat acatacatct attctatact 5221 gtaactatag atacaactag aatatttata tataaaaaaa ttattattat tatttattat 5281 ttttatataa ttaagagaag agagaaaaaa caaaaacact tgttttagga aatttatttg 5341 caagcaaaca tgttgaaatg tttgagagga aatattatat acacatatat agctcaaggc 5401 aaatccctaa gcagttatag atcatgaaaa aagtcggagt tcgaggcaat tggatacacc 5461 aatgaagaga aagtataaag ttcaaatgaa aattcaattt gaagctaaga tttcattgtt 5521 tttggtattg tttttattta atgcttgaag aagataatat agctcaaggt cttagctgtt 5581 tttaacaatt tgaatctatt tcctaagtta attaaatcaa aagttttagg gaaaaaactg 5641 atttattaac aaaatttata taaatcatac gcaacctggg caaaaaatca gtttttaatt 5701 aatatcttat tttaaacgga tttttgtatg gtttttcttt gttttat