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LOCUS XM_059366399 4887 bp mRNA linear INV 02-SEP-2023 transcript variant X9, mRNA. ACCESSION XM_059366399 VERSION XM_059366399.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4887 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4887 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 1441..4206 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222382.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggagtgagt cctcgtcacg 301 attgtgtgat ttattttccc taaaaaatct ctgtttaatt taaaaatcag acaatagcaa 361 caataaaaca actgtatgca caaaaataaa ttttaatttt ttataaaaaa atgtaagcaa 421 cagcaaaaaa agacaataag aaatttggaa ataaaaagaa acaacaacaa ctaaaataaa 481 ataatagcaa atagcaaaat gttcgatatc cgttgagttc ctataacaaa tggctgataa 541 acaacaacga caacaacata ccacaacata aataaaataa caactacagc acgtacaacc 601 aacaacatct ctctctctct ctctctctct gtctctctcg ctcaacacac tctcatagca 661 acaccaaaaa aatcaaatca acaaaagaaa actctgcaaa gcaaaataaa taaataaaac 721 aacaactaca aaagcagtct ctctgacaac aacaaaagaa aaagcagccg catccatagg 781 ccaccagaca atgataatgt cgttgataat gttgccacct gccaccttta aagatactgt 841 ctacaaaaca ttgccaatgt tgttacgagc ctaaagggat atcctcaaaa aaaaaaacaa 901 acagcagcgc agcagttgtc atctgtctac ttcgacttct tcgtcttctt ctttctttat 961 ctttcccata ttcagtcttt cgcacaaacc atacactctc gctcacttct atgccaaagg 1021 caaggctgat aaacaaatgt tggtgggatt taatattttc aacagaaatt ttcttactct 1081 gctttaaaag acttcttcgc atctcaatct cttatcctgt tttatggaca gatttcctgt 1141 tggcccaaca ttgcgtgcgg ttgtgttgac ccaatttcat cacttcaact agacacagcc 1201 atccaagaca tgaaaagaaa agctcaaatt caaaaataaa accaaaggtc ttccaagtat 1261 aacaaaaact agaaacaaca tcctgtaaaa ctcaataaaa aaaaaacaaa aacaacaaaa 1321 aaccaaggca aaccacaacg actaacaaca attgcaaaag gcaaacagag aaacaccatt 1381 ctcatcaata ataacaacaa cgaacaacgg agtaacatac aaaagccttt ttcacaaggc 1441 atgtttatac ctgattcact gcgtagctgt atgatcgaga cggacgttaa ctcttatctg 1501 caaacatcat cctcaggaca ggtgctgaac ttatacgtgg atgagtttca tccgttcatt 1561 gaagccctgt tgccatatgt caaatcattt tcgtactcgt ggttcaactt acaagcagcc 1621 aagcgtaaat actacaagaa acatgagaaa cgcatgtcat tggaggagga gcgacattgc 1681 aaggatgaac tacagaacga aaaggctgag gttaaacaga aatgggcttc ccgtttgctg 1741 ggaaaattac gcaaagacat aacccaagaa tgccgcgaag actttgtaca gtccataacg 1801 ggcaaacgca aatcgatatg tgttctctcc aatcccgatc agaaaggcaa aatgcgtcgc 1861 atcgattgtt tgcggcaggc ggacaaggtt tggcggctcg atctagtcat ggtcatactc 1921 ttcaaggcca tacctttgga gagcaccgat ggcgaacgtc tggaaaaatc tcccgaatgc 1981 atacacccgg ctttgtgtgt caatccctat cacatcaatg tctcagtgcg tgaactcgat 2041 ttgtatttgg ccaatttcat caatacccac gatccattga gtagtcctac gcccacaaca 2101 ccgcctccgg gcacaccctc aacgccttcg ctcatgctct atagcaatga gcataatgcc 2161 agcaccaaca acaacaacac caatagctca gacaataaga aacacataga agaagagcgc 2221 aagaacaaag acgtagacaa cacaccattt gcaggctaca gccacaatcc ctacaatggt 2281 gttgtgtgca atgatataat tttggccact ggtgttttct cttccaagga gctttggaag 2341 ctgtcaaaag agaggaacaa ctctttcatt ttagcttcca tattggaaga aaccgccaat 2401 gatctcatcc aggctagctc gatcaaattg gagcatccgg cggctgccta tgagtgcaat 2461 acatatcaaa tgtcagcctc aggagctcca ctgggttcgg tggtgggagg agttaacagt 2521 gcgggtatgg tgacagcaag tgatggcagg gcctcggtta gtgcttccat ggtattgccc 2581 tcgggttaca gcattgactt tgtggatcca cgcagcagca tgcatctctc aaactcctct 2641 ctgctgaggg cctcttcggc taccacctgc aaaagtgatc ccaatggctc gccacaggat 2701 ggcagcagtt tctctgtgat attgaggcaa aatgaagaca atggcagcaa tggcggagcc 2761 gctgccagca ataatgccga tgatcctgct ctacagaggt acacgcccac cagcaataga 2821 gtgttgttga gtatggggca aatgaggcca ggagaagtgc ttatgcaaca caatgtcagc 2881 tcttccttgg tgccaaactc ggttagccct gctttgtatt atccccagca gaacagtccc 2941 aactccaatg ctaatgaggc cgccgaagaa gcccatcatc agcaacacca tcatcagcag 3001 caacaacacc accagcatca tcatcatcaa catcaactgc atcaggcatc cgctacaccc 3061 aaatatgcca ccgagttggt caaccacggt caggatatgt cggaatttgt ggcttatgtc 3121 tgccaggata ctgggggtat acatgccgcc aatgcgggcg atccttccga cttacatgtg 3181 catcatcacc aaacgtcttc ccattttcaa ttgcagcatg ctgctgccgc cgctgctgtg 3241 ggtcggggtc ccaagatttc agcagtctcg gctgccgcag ctgcggcaca ttaccagcaa 3301 tacagcacca tgttgccacc accaccgcta ccgcctatgg cccggccggt ggccataata 3361 cgttcgacgg gggatttaac catggtggcg tcaccaccct catctgccgc catatcaccg 3421 ccccctctga cgagtgtatc ctcggctggt gattcgccac gacatcatca ccagagtttg 3481 cagcatcatc atccttcctc acatcatcat catcaccacc atcatcatgg acatcagcag 3541 cagcaacagc aacatcatca ggcacagcag caacacacca ctatcgatca cacctcgaat 3601 tccagcagtg gcctaagctc aatgacttcg aaactaacca acacaaccgc ctccaccagt 3661 tccgcccaag agtctacaac cagcaccata actgtgggca gcaataataa ttcttccgat 3721 ttggtggtgg cctctacagc gtcggcatca ccgcctccag cacccacaca atcgccgcat 3781 gcacacatca tagatgtggc aagatgtaag acatcgccca cttcatcggc ggcggcagca 3841 gttgcggtgt ccacacccac atcggcgttg acgcgtatat cggcccaacc gtatcccaat 3901 acgaatgggc gtgaatactt taatcatttc catacacaaa ccacaccgct cttgggttat 3961 accaccatgt cgggggtcat cagtcctaca aatcttagcc tctattcatc tacaacgggt 4021 gttacatcgc atcgcaccac ccccaggtca cgctggaatt cctcttttct ttccatggaa 4081 gatgatttca acatgatgtc ccacacactg acaagcacaa atccagaagc cactccagtc 4141 atacttatgg aagattctgg tcgttacagt gatgaatatg tcacaagtcg tgattatgtt 4201 acatgattat aaatgcatca atcgttttat atgccctact agaactgcaa tcacagcaac 4261 agacagcaac aataataaca aacaaaccaa aactgtaaga aataataaca ctactattct 4321 atacatacat atatatatat acatacatct attctatact gtaactatag atacaactag 4381 aatatttata tataaaaaaa ttattattat tatttattat ttttatataa ttaagagaag 4441 agagaaaaaa caaaaacact tgttttagga aatttatttg caagcaaaca tgttgaaatg 4501 tttgagagga aatattatat acacatatat agctcaaggc aaatccctaa gcagttatag 4561 atcatgaaaa aagtcggagt tcgaggcaat tggatacacc aatgaagaga aagtataaag 4621 ttcaaatgaa aattcaattt gaagctaaga tttcattgtt tttggtattg tttttattta 4681 atgcttgaag aagataatat agctcaaggt cttagctgtt tttaacaatt tgaatctatt 4741 tcctaagtta attaaatcaa aagttttagg gaaaaaactg atttattaac aaaatttata 4801 taaatcatac gcaacctggg caaaaaatca gtttttaatt aatatcttat tttaaacgga 4861 tttttgtatg gtttttcttt gttttat