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LOCUS XM_059366398 4822 bp mRNA linear INV 02-SEP-2023 transcript variant X8, mRNA. ACCESSION XM_059366398 VERSION XM_059366398.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4822 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4822 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 1376..4141 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222381.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggagacaat agcaacaata 301 aaacaactgt atgcacaaaa ataaatttta attttttata aaaaaatgta agcaacagca 361 aaaaaagaca ataagaaatt tggaaataaa aagaaacaac aacaactaaa ataaaataat 421 agcaaatagc aaaatgttcg atatccgttg agttcctata acaaatggct gataaacaac 481 aacgacaaca acataccaca acataaataa aataacaact acagcacgta caaccaacaa 541 catctctctc tctctctctc tctctgtctc tctcgctcaa cacactctca tagcaacacc 601 aaaaaaatca aatcaacaaa agaaaactct gcaaagcaaa ataaataaat aaaacaacaa 661 ctacaaaagc agtctctctg acaacaacaa aagaaaaagc agccgcatcc ataggccacc 721 agacaatgat aatgtcgttg ataatgttgc cacctgccac ctttaaagat actgtctaca 781 aaacattgcc aatgttgtta cgagcctaaa gggatatcct caaaaaaaaa aacaaacagc 841 agcgcagcag ttgtcatctg tctacttcga cttcttcgtc ttcttctttc tttatctttc 901 ccatattcag tctttcgcac aaaccataca ctctcgctca cttctatgcc aaaggcaagg 961 ctgataaaca aatgttggtg ggatttaata ttttcaacag aaattttctt actctgcttt 1021 aaaagacttc ttcgcatctc aatctcttat cctgttttat ggacagattt cctgttggcc 1081 caacattgcg tgcggttgtg ttgacccaat ttcatcactt caactagaca cagccatcca 1141 agacatgaaa agaaaagctc aaattcaaaa ataaaaccaa aggtcttcca agtataacaa 1201 aaactagaaa caacatcctg taaaactcaa taaaaaaaaa acaaaaacaa caaaaaacca 1261 aggcaaacca caacgactaa caacaattgc aaaaggcaaa cagagaaaca ccattctcat 1321 caataataac aacaacgaac aacggagtaa catacaaaag cctttttcac aaggcatgtt 1381 tatacctgat tcactgcgta gctgtatgat cgagacggac gttaactctt atctgcaaac 1441 atcatcctca ggacaggtgc tgaacttata cgtggatgag tttcatccgt tcattgaagc 1501 cctgttgcca tatgtcaaat cattttcgta ctcgtggttc aacttacaag cagccaagcg 1561 taaatactac aagaaacatg agaaacgcat gtcattggag gaggagcgac attgcaagga 1621 tgaactacag aacgaaaagg ctgaggttaa acagaaatgg gcttcccgtt tgctgggaaa 1681 attacgcaaa gacataaccc aagaatgccg cgaagacttt gtacagtcca taacgggcaa 1741 acgcaaatcg atatgtgttc tctccaatcc cgatcagaaa ggcaaaatgc gtcgcatcga 1801 ttgtttgcgg caggcggaca aggtttggcg gctcgatcta gtcatggtca tactcttcaa 1861 ggccatacct ttggagagca ccgatggcga acgtctggaa aaatctcccg aatgcataca 1921 cccggctttg tgtgtcaatc cctatcacat caatgtctca gtgcgtgaac tcgatttgta 1981 tttggccaat ttcatcaata cccacgatcc attgagtagt cctacgccca caacaccgcc 2041 tccgggcaca ccctcaacgc cttcgctcat gctctatagc aatgagcata atgccagcac 2101 caacaacaac aacaccaata gctcagacaa taagaaacac atagaagaag agcgcaagaa 2161 caaagacgta gacaacacac catttgcagg ctacagccac aatccctaca atggtgttgt 2221 gtgcaatgat ataattttgg ccactggtgt tttctcttcc aaggagcttt ggaagctgtc 2281 aaaagagagg aacaactctt tcattttagc ttccatattg gaagaaaccg ccaatgatct 2341 catccaggct agctcgatca aattggagca tccggcggct gcctatgagt gcaatacata 2401 tcaaatgtca gcctcaggag ctccactggg ttcggtggtg ggaggagtta acagtgcggg 2461 tatggtgaca gcaagtgatg gcagggcctc ggttagtgct tccatggtat tgccctcggg 2521 ttacagcatt gactttgtgg atccacgcag cagcatgcat ctctcaaact cctctctgct 2581 gagggcctct tcggctacca cctgcaaaag tgatcccaat ggctcgccac aggatggcag 2641 cagtttctct gtgatattga ggcaaaatga agacaatggc agcaatggcg gagccgctgc 2701 cagcaataat gccgatgatc ctgctctaca gaggtacacg cccaccagca atagagtgtt 2761 gttgagtatg gggcaaatga ggccaggaga agtgcttatg caacacaatg tcagctcttc 2821 cttggtgcca aactcggtta gccctgcttt gtattatccc cagcagaaca gtcccaactc 2881 caatgctaat gaggccgccg aagaagccca tcatcagcaa caccatcatc agcagcaaca 2941 acaccaccag catcatcatc atcaacatca actgcatcag gcatccgcta cacccaaata 3001 tgccaccgag ttggtcaacc acggtcagga tatgtcggaa tttgtggctt atgtctgcca 3061 ggatactggg ggtatacatg ccgccaatgc gggcgatcct tccgacttac atgtgcatca 3121 tcaccaaacg tcttcccatt ttcaattgca gcatgctgct gccgccgctg ctgtgggtcg 3181 gggtcccaag atttcagcag tctcggctgc cgcagctgcg gcacattacc agcaatacag 3241 caccatgttg ccaccaccac cgctaccgcc tatggcccgg ccggtggcca taatacgttc 3301 gacgggggat ttaaccatgg tggcgtcacc accctcatct gccgccatat caccgccccc 3361 tctgacgagt gtatcctcgg ctggtgattc gccacgacat catcaccaga gtttgcagca 3421 tcatcatcct tcctcacatc atcatcatca ccaccatcat catggacatc agcagcagca 3481 acagcaacat catcaggcac agcagcaaca caccactatc gatcacacct cgaattccag 3541 cagtggccta agctcaatga cttcgaaact aaccaacaca accgcctcca ccagttccgc 3601 ccaagagtct acaaccagca ccataactgt gggcagcaat aataattctt ccgatttggt 3661 ggtggcctct acagcgtcgg catcaccgcc tccagcaccc acacaatcgc cgcatgcaca 3721 catcatagat gtggcaagat gtaagacatc gcccacttca tcggcggcgg cagcagttgc 3781 ggtgtccaca cccacatcgg cgttgacgcg tatatcggcc caaccgtatc ccaatacgaa 3841 tgggcgtgaa tactttaatc atttccatac acaaaccaca ccgctcttgg gttataccac 3901 catgtcgggg gtcatcagtc ctacaaatct tagcctctat tcatctacaa cgggtgttac 3961 atcgcatcgc accaccccca ggtcacgctg gaattcctct tttctttcca tggaagatga 4021 tttcaacatg atgtcccaca cactgacaag cacaaatcca gaagccactc cagtcatact 4081 tatggaagat tctggtcgtt acagtgatga atatgtcaca agtcgtgatt atgttacatg 4141 attataaatg catcaatcgt tttatatgcc ctactagaac tgcaatcaca gcaacagaca 4201 gcaacaataa taacaaacaa accaaaactg taagaaataa taacactact attctataca 4261 tacatatata tatatacata catctattct atactgtaac tatagataca actagaatat 4321 ttatatataa aaaaattatt attattattt attattttta tataattaag agaagagaga 4381 aaaaacaaaa acacttgttt taggaaattt atttgcaagc aaacatgttg aaatgtttga 4441 gaggaaatat tatatacaca tatatagctc aaggcaaatc cctaagcagt tatagatcat 4501 gaaaaaagtc ggagttcgag gcaattggat acaccaatga agagaaagta taaagttcaa 4561 atgaaaattc aatttgaagc taagatttca ttgtttttgg tattgttttt atttaatgct 4621 tgaagaagat aatatagctc aaggtcttag ctgtttttaa caatttgaat ctatttccta 4681 agttaattaa atcaaaagtt ttagggaaaa aactgattta ttaacaaaat ttatataaat 4741 catacgcaac ctgggcaaaa aatcagtttt taattaatat cttattttaa acggattttt 4801 gtatggtttt tctttgtttt at