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LOCUS XM_059366397 5253 bp mRNA linear INV 02-SEP-2023 transcript variant X7, mRNA. ACCESSION XM_059366397 VERSION XM_059366397.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5253 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5253 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 1807..4572 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222380.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacacaa 721 tagcaacaat aaaacaactg tatgcacaaa aataaatttt aattttttat aaaaaaatgt 781 aagcaacagc aaaaaaagac aataagaaat ttggaaataa aaagaaacaa caacaactaa 841 aataaaataa tagcaaatag caaaatgttc gatatccgtt gagttcctat aacaaatggc 901 tgataaacaa caacgacaac aacataccac aacataaata aaataacaac tacagcacgt 961 acaaccaaca acatctctct ctctctctct ctctctgtct ctctcgctca acacactctc 1021 atagcaacac caaaaaaatc aaatcaacaa aagaaaactc tgcaaagcaa aataaataaa 1081 taaaacaaca actacaaaag cagtctctct gacaacaaca aaagaaaaag cagccgcatc 1141 cataggccac cagacaatga taatgtcgtt gataatgttg ccacctgcca cctttaaaga 1201 tactgtctac aaaacattgc caatgttgtt acgagcctaa agggatatcc tcaaaaaaaa 1261 aaacaaacag cagcgcagca gttgtcatct gtctacttcg acttcttcgt cttcttcttt 1321 ctttatcttt cccatattca gtctttcgca caaaccatac actctcgctc acttctatgc 1381 caaaggcaag gctgataaac aaatgttggt gggatttaat attttcaaca gaaattttct 1441 tactctgctt taaaagactt cttcgcatct caatctctta tcctgtttta tggacagatt 1501 tcctgttggc ccaacattgc gtgcggttgt gttgacccaa tttcatcact tcaactagac 1561 acagccatcc aagacatgaa aagaaaagct caaattcaaa aataaaacca aaggtcttcc 1621 aagtataaca aaaactagaa acaacatcct gtaaaactca ataaaaaaaa aacaaaaaca 1681 acaaaaaacc aaggcaaacc acaacgacta acaacaattg caaaaggcaa acagagaaac 1741 accattctca tcaataataa caacaacgaa caacggagta acatacaaaa gcctttttca 1801 caaggcatgt ttatacctga ttcactgcgt agctgtatga tcgagacgga cgttaactct 1861 tatctgcaaa catcatcctc aggacaggtg ctgaacttat acgtggatga gtttcatccg 1921 ttcattgaag ccctgttgcc atatgtcaaa tcattttcgt actcgtggtt caacttacaa 1981 gcagccaagc gtaaatacta caagaaacat gagaaacgca tgtcattgga ggaggagcga 2041 cattgcaagg atgaactaca gaacgaaaag gctgaggtta aacagaaatg ggcttcccgt 2101 ttgctgggaa aattacgcaa agacataacc caagaatgcc gcgaagactt tgtacagtcc 2161 ataacgggca aacgcaaatc gatatgtgtt ctctccaatc ccgatcagaa aggcaaaatg 2221 cgtcgcatcg attgtttgcg gcaggcggac aaggtttggc ggctcgatct agtcatggtc 2281 atactcttca aggccatacc tttggagagc accgatggcg aacgtctgga aaaatctccc 2341 gaatgcatac acccggcttt gtgtgtcaat ccctatcaca tcaatgtctc agtgcgtgaa 2401 ctcgatttgt atttggccaa tttcatcaat acccacgatc cattgagtag tcctacgccc 2461 acaacaccgc ctccgggcac accctcaacg ccttcgctca tgctctatag caatgagcat 2521 aatgccagca ccaacaacaa caacaccaat agctcagaca ataagaaaca catagaagaa 2581 gagcgcaaga acaaagacgt agacaacaca ccatttgcag gctacagcca caatccctac 2641 aatggtgttg tgtgcaatga tataattttg gccactggtg ttttctcttc caaggagctt 2701 tggaagctgt caaaagagag gaacaactct ttcattttag cttccatatt ggaagaaacc 2761 gccaatgatc tcatccaggc tagctcgatc aaattggagc atccggcggc tgcctatgag 2821 tgcaatacat atcaaatgtc agcctcagga gctccactgg gttcggtggt gggaggagtt 2881 aacagtgcgg gtatggtgac agcaagtgat ggcagggcct cggttagtgc ttccatggta 2941 ttgccctcgg gttacagcat tgactttgtg gatccacgca gcagcatgca tctctcaaac 3001 tcctctctgc tgagggcctc ttcggctacc acctgcaaaa gtgatcccaa tggctcgcca 3061 caggatggca gcagtttctc tgtgatattg aggcaaaatg aagacaatgg cagcaatggc 3121 ggagccgctg ccagcaataa tgccgatgat cctgctctac agaggtacac gcccaccagc 3181 aatagagtgt tgttgagtat ggggcaaatg aggccaggag aagtgcttat gcaacacaat 3241 gtcagctctt ccttggtgcc aaactcggtt agccctgctt tgtattatcc ccagcagaac 3301 agtcccaact ccaatgctaa tgaggccgcc gaagaagccc atcatcagca acaccatcat 3361 cagcagcaac aacaccacca gcatcatcat catcaacatc aactgcatca ggcatccgct 3421 acacccaaat atgccaccga gttggtcaac cacggtcagg atatgtcgga atttgtggct 3481 tatgtctgcc aggatactgg gggtatacat gccgccaatg cgggcgatcc ttccgactta 3541 catgtgcatc atcaccaaac gtcttcccat tttcaattgc agcatgctgc tgccgccgct 3601 gctgtgggtc ggggtcccaa gatttcagca gtctcggctg ccgcagctgc ggcacattac 3661 cagcaataca gcaccatgtt gccaccacca ccgctaccgc ctatggcccg gccggtggcc 3721 ataatacgtt cgacggggga tttaaccatg gtggcgtcac caccctcatc tgccgccata 3781 tcaccgcccc ctctgacgag tgtatcctcg gctggtgatt cgccacgaca tcatcaccag 3841 agtttgcagc atcatcatcc ttcctcacat catcatcatc accaccatca tcatggacat 3901 cagcagcagc aacagcaaca tcatcaggca cagcagcaac acaccactat cgatcacacc 3961 tcgaattcca gcagtggcct aagctcaatg acttcgaaac taaccaacac aaccgcctcc 4021 accagttccg cccaagagtc tacaaccagc accataactg tgggcagcaa taataattct 4081 tccgatttgg tggtggcctc tacagcgtcg gcatcaccgc ctccagcacc cacacaatcg 4141 ccgcatgcac acatcataga tgtggcaaga tgtaagacat cgcccacttc atcggcggcg 4201 gcagcagttg cggtgtccac acccacatcg gcgttgacgc gtatatcggc ccaaccgtat 4261 cccaatacga atgggcgtga atactttaat catttccata cacaaaccac accgctcttg 4321 ggttatacca ccatgtcggg ggtcatcagt cctacaaatc ttagcctcta ttcatctaca 4381 acgggtgtta catcgcatcg caccaccccc aggtcacgct ggaattcctc ttttctttcc 4441 atggaagatg atttcaacat gatgtcccac acactgacaa gcacaaatcc agaagccact 4501 ccagtcatac ttatggaaga ttctggtcgt tacagtgatg aatatgtcac aagtcgtgat 4561 tatgttacat gattataaat gcatcaatcg ttttatatgc cctactagaa ctgcaatcac 4621 agcaacagac agcaacaata ataacaaaca aaccaaaact gtaagaaata ataacactac 4681 tattctatac atacatatat atatatacat acatctattc tatactgtaa ctatagatac 4741 aactagaata tttatatata aaaaaattat tattattatt tattattttt atataattaa 4801 gagaagagag aaaaaacaaa aacacttgtt ttaggaaatt tatttgcaag caaacatgtt 4861 gaaatgtttg agaggaaata ttatatacac atatatagct caaggcaaat ccctaagcag 4921 ttatagatca tgaaaaaagt cggagttcga ggcaattgga tacaccaatg aagagaaagt 4981 ataaagttca aatgaaaatt caatttgaag ctaagatttc attgtttttg gtattgtttt 5041 tatttaatgc ttgaagaaga taatatagct caaggtctta gctgttttta acaatttgaa 5101 tctatttcct aagttaatta aatcaaaagt tttagggaaa aaactgattt attaacaaaa 5161 tttatataaa tcatacgcaa cctgggcaaa aaatcagttt ttaattaata tcttatttta 5221 aacggatttt tgtatggttt ttctttgttt tat