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LOCUS XM_059366395 5016 bp mRNA linear INV 02-SEP-2023 transcript variant X6, mRNA. ACCESSION XM_059366395 VERSION XM_059366395.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5016 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5016 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 1570..4335 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222378.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggagcctac ataaataaac 301 aaagaaaatt tataaaaaaa aaaaataaga aaataaacaa aaacgtcaac ggcaataata 361 atatagaaat tgttttggtt aattattttt ggtttatcac tcaacgtcat ttagtgagtc 421 ctcgtcacga ttgtgtgatt tattttccct aaaaaatctc tgtttaattt aaaaatcaga 481 caatagcaac aataaaacaa ctgtatgcac aaaaataaat tttaattttt tataaaaaaa 541 tgtaagcaac agcaaaaaaa gacaataaga aatttggaaa taaaaagaaa caacaacaac 601 taaaataaaa taatagcaaa tagcaaaatg ttcgatatcc gttgagttcc tataacaaat 661 ggctgataaa caacaacgac aacaacatac cacaacataa ataaaataac aactacagca 721 cgtacaacca acaacatctc tctctctctc tctctctctg tctctctcgc tcaacacact 781 ctcatagcaa caccaaaaaa atcaaatcaa caaaagaaaa ctctgcaaag caaaataaat 841 aaataaaaca acaactacaa aagcagtctc tctgacaaca acaaaagaaa aagcagccgc 901 atccataggc caccagacaa tgataatgtc gttgataatg ttgccacctg ccacctttaa 961 agatactgtc tacaaaacat tgccaatgtt gttacgagcc taaagggata tcctcaaaaa 1021 aaaaaacaaa cagcagcgca gcagttgtca tctgtctact tcgacttctt cgtcttcttc 1081 tttctttatc tttcccatat tcagtctttc gcacaaacca tacactctcg ctcacttcta 1141 tgccaaaggc aaggctgata aacaaatgtt ggtgggattt aatattttca acagaaattt 1201 tcttactctg ctttaaaaga cttcttcgca tctcaatctc ttatcctgtt ttatggacag 1261 atttcctgtt ggcccaacat tgcgtgcggt tgtgttgacc caatttcatc acttcaacta 1321 gacacagcca tccaagacat gaaaagaaaa gctcaaattc aaaaataaaa ccaaaggtct 1381 tccaagtata acaaaaacta gaaacaacat cctgtaaaac tcaataaaaa aaaaacaaaa 1441 acaacaaaaa accaaggcaa accacaacga ctaacaacaa ttgcaaaagg caaacagaga 1501 aacaccattc tcatcaataa taacaacaac gaacaacgga gtaacataca aaagcctttt 1561 tcacaaggca tgtttatacc tgattcactg cgtagctgta tgatcgagac ggacgttaac 1621 tcttatctgc aaacatcatc ctcaggacag gtgctgaact tatacgtgga tgagtttcat 1681 ccgttcattg aagccctgtt gccatatgtc aaatcatttt cgtactcgtg gttcaactta 1741 caagcagcca agcgtaaata ctacaagaaa catgagaaac gcatgtcatt ggaggaggag 1801 cgacattgca aggatgaact acagaacgaa aaggctgagg ttaaacagaa atgggcttcc 1861 cgtttgctgg gaaaattacg caaagacata acccaagaat gccgcgaaga ctttgtacag 1921 tccataacgg gcaaacgcaa atcgatatgt gttctctcca atcccgatca gaaaggcaaa 1981 atgcgtcgca tcgattgttt gcggcaggcg gacaaggttt ggcggctcga tctagtcatg 2041 gtcatactct tcaaggccat acctttggag agcaccgatg gcgaacgtct ggaaaaatct 2101 cccgaatgca tacacccggc tttgtgtgtc aatccctatc acatcaatgt ctcagtgcgt 2161 gaactcgatt tgtatttggc caatttcatc aatacccacg atccattgag tagtcctacg 2221 cccacaacac cgcctccggg cacaccctca acgccttcgc tcatgctcta tagcaatgag 2281 cataatgcca gcaccaacaa caacaacacc aatagctcag acaataagaa acacatagaa 2341 gaagagcgca agaacaaaga cgtagacaac acaccatttg caggctacag ccacaatccc 2401 tacaatggtg ttgtgtgcaa tgatataatt ttggccactg gtgttttctc ttccaaggag 2461 ctttggaagc tgtcaaaaga gaggaacaac tctttcattt tagcttccat attggaagaa 2521 accgccaatg atctcatcca ggctagctcg atcaaattgg agcatccggc ggctgcctat 2581 gagtgcaata catatcaaat gtcagcctca ggagctccac tgggttcggt ggtgggagga 2641 gttaacagtg cgggtatggt gacagcaagt gatggcaggg cctcggttag tgcttccatg 2701 gtattgccct cgggttacag cattgacttt gtggatccac gcagcagcat gcatctctca 2761 aactcctctc tgctgagggc ctcttcggct accacctgca aaagtgatcc caatggctcg 2821 ccacaggatg gcagcagttt ctctgtgata ttgaggcaaa atgaagacaa tggcagcaat 2881 ggcggagccg ctgccagcaa taatgccgat gatcctgctc tacagaggta cacgcccacc 2941 agcaatagag tgttgttgag tatggggcaa atgaggccag gagaagtgct tatgcaacac 3001 aatgtcagct cttccttggt gccaaactcg gttagccctg ctttgtatta tccccagcag 3061 aacagtccca actccaatgc taatgaggcc gccgaagaag cccatcatca gcaacaccat 3121 catcagcagc aacaacacca ccagcatcat catcatcaac atcaactgca tcaggcatcc 3181 gctacaccca aatatgccac cgagttggtc aaccacggtc aggatatgtc ggaatttgtg 3241 gcttatgtct gccaggatac tgggggtata catgccgcca atgcgggcga tccttccgac 3301 ttacatgtgc atcatcacca aacgtcttcc cattttcaat tgcagcatgc tgctgccgcc 3361 gctgctgtgg gtcggggtcc caagatttca gcagtctcgg ctgccgcagc tgcggcacat 3421 taccagcaat acagcaccat gttgccacca ccaccgctac cgcctatggc ccggccggtg 3481 gccataatac gttcgacggg ggatttaacc atggtggcgt caccaccctc atctgccgcc 3541 atatcaccgc cccctctgac gagtgtatcc tcggctggtg attcgccacg acatcatcac 3601 cagagtttgc agcatcatca tccttcctca catcatcatc atcaccacca tcatcatgga 3661 catcagcagc agcaacagca acatcatcag gcacagcagc aacacaccac tatcgatcac 3721 acctcgaatt ccagcagtgg cctaagctca atgacttcga aactaaccaa cacaaccgcc 3781 tccaccagtt ccgcccaaga gtctacaacc agcaccataa ctgtgggcag caataataat 3841 tcttccgatt tggtggtggc ctctacagcg tcggcatcac cgcctccagc acccacacaa 3901 tcgccgcatg cacacatcat agatgtggca agatgtaaga catcgcccac ttcatcggcg 3961 gcggcagcag ttgcggtgtc cacacccaca tcggcgttga cgcgtatatc ggcccaaccg 4021 tatcccaata cgaatgggcg tgaatacttt aatcatttcc atacacaaac cacaccgctc 4081 ttgggttata ccaccatgtc gggggtcatc agtcctacaa atcttagcct ctattcatct 4141 acaacgggtg ttacatcgca tcgcaccacc cccaggtcac gctggaattc ctcttttctt 4201 tccatggaag atgatttcaa catgatgtcc cacacactga caagcacaaa tccagaagcc 4261 actccagtca tacttatgga agattctggt cgttacagtg atgaatatgt cacaagtcgt 4321 gattatgtta catgattata aatgcatcaa tcgttttata tgccctacta gaactgcaat 4381 cacagcaaca gacagcaaca ataataacaa acaaaccaaa actgtaagaa ataataacac 4441 tactattcta tacatacata tatatatata catacatcta ttctatactg taactataga 4501 tacaactaga atatttatat ataaaaaaat tattattatt atttattatt tttatataat 4561 taagagaaga gagaaaaaac aaaaacactt gttttaggaa atttatttgc aagcaaacat 4621 gttgaaatgt ttgagaggaa atattatata cacatatata gctcaaggca aatccctaag 4681 cagttataga tcatgaaaaa agtcggagtt cgaggcaatt ggatacacca atgaagagaa 4741 agtataaagt tcaaatgaaa attcaatttg aagctaagat ttcattgttt ttggtattgt 4801 ttttatttaa tgcttgaaga agataatata gctcaaggtc ttagctgttt ttaacaattt 4861 gaatctattt cctaagttaa ttaaatcaaa agttttaggg aaaaaactga tttattaaca 4921 aaatttatat aaatcatacg caacctgggc aaaaaatcag tttttaatta atatcttatt 4981 ttaaacggat ttttgtatgg tttttctttg ttttat