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LOCUS XM_059366394 4979 bp mRNA linear INV 02-SEP-2023 transcript variant X5, mRNA. ACCESSION XM_059366394 VERSION XM_059366394.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4979 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..4979 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 1533..4298 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222377.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttgtga gtcctcgtca cgattgtgtg atttattttc cctaaaaaat 421 ctctgtttaa tttaaaaatc agacaatagc aacaataaaa caactgtatg cacaaaaata 481 aattttaatt ttttataaaa aaatgtaagc aacagcaaaa aaagacaata agaaatttgg 541 aaataaaaag aaacaacaac aactaaaata aaataatagc aaatagcaaa atgttcgata 601 tccgttgagt tcctataaca aatggctgat aaacaacaac gacaacaaca taccacaaca 661 taaataaaat aacaactaca gcacgtacaa ccaacaacat ctctctctct ctctctctct 721 ctgtctctct cgctcaacac actctcatag caacaccaaa aaaatcaaat caacaaaaga 781 aaactctgca aagcaaaata aataaataaa acaacaacta caaaagcagt ctctctgaca 841 acaacaaaag aaaaagcagc cgcatccata ggccaccaga caatgataat gtcgttgata 901 atgttgccac ctgccacctt taaagatact gtctacaaaa cattgccaat gttgttacga 961 gcctaaaggg atatcctcaa aaaaaaaaac aaacagcagc gcagcagttg tcatctgtct 1021 acttcgactt cttcgtcttc ttctttcttt atctttccca tattcagtct ttcgcacaaa 1081 ccatacactc tcgctcactt ctatgccaaa ggcaaggctg ataaacaaat gttggtggga 1141 tttaatattt tcaacagaaa ttttcttact ctgctttaaa agacttcttc gcatctcaat 1201 ctcttatcct gttttatgga cagatttcct gttggcccaa cattgcgtgc ggttgtgttg 1261 acccaatttc atcacttcaa ctagacacag ccatccaaga catgaaaaga aaagctcaaa 1321 ttcaaaaata aaaccaaagg tcttccaagt ataacaaaaa ctagaaacaa catcctgtaa 1381 aactcaataa aaaaaaaaca aaaacaacaa aaaaccaagg caaaccacaa cgactaacaa 1441 caattgcaaa aggcaaacag agaaacacca ttctcatcaa taataacaac aacgaacaac 1501 ggagtaacat acaaaagcct ttttcacaag gcatgtttat acctgattca ctgcgtagct 1561 gtatgatcga gacggacgtt aactcttatc tgcaaacatc atcctcagga caggtgctga 1621 acttatacgt ggatgagttt catccgttca ttgaagccct gttgccatat gtcaaatcat 1681 tttcgtactc gtggttcaac ttacaagcag ccaagcgtaa atactacaag aaacatgaga 1741 aacgcatgtc attggaggag gagcgacatt gcaaggatga actacagaac gaaaaggctg 1801 aggttaaaca gaaatgggct tcccgtttgc tgggaaaatt acgcaaagac ataacccaag 1861 aatgccgcga agactttgta cagtccataa cgggcaaacg caaatcgata tgtgttctct 1921 ccaatcccga tcagaaaggc aaaatgcgtc gcatcgattg tttgcggcag gcggacaagg 1981 tttggcggct cgatctagtc atggtcatac tcttcaaggc catacctttg gagagcaccg 2041 atggcgaacg tctggaaaaa tctcccgaat gcatacaccc ggctttgtgt gtcaatccct 2101 atcacatcaa tgtctcagtg cgtgaactcg atttgtattt ggccaatttc atcaataccc 2161 acgatccatt gagtagtcct acgcccacaa caccgcctcc gggcacaccc tcaacgcctt 2221 cgctcatgct ctatagcaat gagcataatg ccagcaccaa caacaacaac accaatagct 2281 cagacaataa gaaacacata gaagaagagc gcaagaacaa agacgtagac aacacaccat 2341 ttgcaggcta cagccacaat ccctacaatg gtgttgtgtg caatgatata attttggcca 2401 ctggtgtttt ctcttccaag gagctttgga agctgtcaaa agagaggaac aactctttca 2461 ttttagcttc catattggaa gaaaccgcca atgatctcat ccaggctagc tcgatcaaat 2521 tggagcatcc ggcggctgcc tatgagtgca atacatatca aatgtcagcc tcaggagctc 2581 cactgggttc ggtggtggga ggagttaaca gtgcgggtat ggtgacagca agtgatggca 2641 gggcctcggt tagtgcttcc atggtattgc cctcgggtta cagcattgac tttgtggatc 2701 cacgcagcag catgcatctc tcaaactcct ctctgctgag ggcctcttcg gctaccacct 2761 gcaaaagtga tcccaatggc tcgccacagg atggcagcag tttctctgtg atattgaggc 2821 aaaatgaaga caatggcagc aatggcggag ccgctgccag caataatgcc gatgatcctg 2881 ctctacagag gtacacgccc accagcaata gagtgttgtt gagtatgggg caaatgaggc 2941 caggagaagt gcttatgcaa cacaatgtca gctcttcctt ggtgccaaac tcggttagcc 3001 ctgctttgta ttatccccag cagaacagtc ccaactccaa tgctaatgag gccgccgaag 3061 aagcccatca tcagcaacac catcatcagc agcaacaaca ccaccagcat catcatcatc 3121 aacatcaact gcatcaggca tccgctacac ccaaatatgc caccgagttg gtcaaccacg 3181 gtcaggatat gtcggaattt gtggcttatg tctgccagga tactgggggt atacatgccg 3241 ccaatgcggg cgatccttcc gacttacatg tgcatcatca ccaaacgtct tcccattttc 3301 aattgcagca tgctgctgcc gccgctgctg tgggtcgggg tcccaagatt tcagcagtct 3361 cggctgccgc agctgcggca cattaccagc aatacagcac catgttgcca ccaccaccgc 3421 taccgcctat ggcccggccg gtggccataa tacgttcgac gggggattta accatggtgg 3481 cgtcaccacc ctcatctgcc gccatatcac cgccccctct gacgagtgta tcctcggctg 3541 gtgattcgcc acgacatcat caccagagtt tgcagcatca tcatccttcc tcacatcatc 3601 atcatcacca ccatcatcat ggacatcagc agcagcaaca gcaacatcat caggcacagc 3661 agcaacacac cactatcgat cacacctcga attccagcag tggcctaagc tcaatgactt 3721 cgaaactaac caacacaacc gcctccacca gttccgccca agagtctaca accagcacca 3781 taactgtggg cagcaataat aattcttccg atttggtggt ggcctctaca gcgtcggcat 3841 caccgcctcc agcacccaca caatcgccgc atgcacacat catagatgtg gcaagatgta 3901 agacatcgcc cacttcatcg gcggcggcag cagttgcggt gtccacaccc acatcggcgt 3961 tgacgcgtat atcggcccaa ccgtatccca atacgaatgg gcgtgaatac tttaatcatt 4021 tccatacaca aaccacaccg ctcttgggtt ataccaccat gtcgggggtc atcagtccta 4081 caaatcttag cctctattca tctacaacgg gtgttacatc gcatcgcacc acccccaggt 4141 cacgctggaa ttcctctttt ctttccatgg aagatgattt caacatgatg tcccacacac 4201 tgacaagcac aaatccagaa gccactccag tcatacttat ggaagattct ggtcgttaca 4261 gtgatgaata tgtcacaagt cgtgattatg ttacatgatt ataaatgcat caatcgtttt 4321 atatgcccta ctagaactgc aatcacagca acagacagca acaataataa caaacaaacc 4381 aaaactgtaa gaaataataa cactactatt ctatacatac atatatatat atacatacat 4441 ctattctata ctgtaactat agatacaact agaatattta tatataaaaa aattattatt 4501 attatttatt atttttatat aattaagaga agagagaaaa aacaaaaaca cttgttttag 4561 gaaatttatt tgcaagcaaa catgttgaaa tgtttgagag gaaatattat atacacatat 4621 atagctcaag gcaaatccct aagcagttat agatcatgaa aaaagtcgga gttcgaggca 4681 attggataca ccaatgaaga gaaagtataa agttcaaatg aaaattcaat ttgaagctaa 4741 gatttcattg tttttggtat tgtttttatt taatgcttga agaagataat atagctcaag 4801 gtcttagctg tttttaacaa tttgaatcta tttcctaagt taattaaatc aaaagtttta 4861 gggaaaaaac tgatttatta acaaaattta tataaatcat acgcaacctg ggcaaaaaat 4921 cagtttttaa ttaatatctt attttaaacg gatttttgta tggtttttct ttgttttat