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LOCUS XM_059366393 5820 bp mRNA linear INV 02-SEP-2023 transcript variant X4, mRNA. ACCESSION XM_059366393 VERSION XM_059366393.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5820 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5820 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 2374..5139 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222376.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacgtac 721 ggaacgggaa aaaaatcaca aaacgaaaac aaaaataagt cgcacacgat tcgaaaaaaa 781 taaaacaaaa acaaaaacaa caagaagcag aacgaatttt cttttttcct tctttttctg 841 agtgctcgac tgcctgcttg cctgcctgcc tgtcgtcgtc tgtctgtctg tcgtctcttc 901 ttttgcgttt gaacaaaaaa attgtgtaac aaaaattcaa aataaatttt ttcaccaaaa 961 cccatatccc tttcaacgaa ttttaaaacg aaaaaaatcc actgtaaaag gaaaatttgt 1021 gcaaaaaagg gcttcttagc caggaaatgt gaaatgtgaa aagcaaatgg agttgacagt 1081 gattggcaaa tgtcggtgca agaaatcgat aatgggcaaa gcaagcggcc caaccaagtt 1141 tgttcttcta aaaagcctac ataaataaac aaagaaaatt tataaaaaaa aaaaataaga 1201 aaataaacaa aaacgtcaac ggcaataata atatagaaat tgttttggtt aattattttt 1261 ggtttatcac tcaacgtcat ttaacaatag caacaataaa acaactgtat gcacaaaaat 1321 aaattttaat tttttataaa aaaatgtaag caacagcaaa aaaagacaat aagaaatttg 1381 gaaataaaaa gaaacaacaa caactaaaat aaaataatag caaatagcaa aatgttcgat 1441 atccgttgag ttcctataac aaatggctga taaacaacaa cgacaacaac ataccacaac 1501 ataaataaaa taacaactac agcacgtaca accaacaaca tctctctctc tctctctctc 1561 tctgtctctc tcgctcaaca cactctcata gcaacaccaa aaaaatcaaa tcaacaaaag 1621 aaaactctgc aaagcaaaat aaataaataa aacaacaact acaaaagcag tctctctgac 1681 aacaacaaaa gaaaaagcag ccgcatccat aggccaccag acaatgataa tgtcgttgat 1741 aatgttgcca cctgccacct ttaaagatac tgtctacaaa acattgccaa tgttgttacg 1801 agcctaaagg gatatcctca aaaaaaaaaa caaacagcag cgcagcagtt gtcatctgtc 1861 tacttcgact tcttcgtctt cttctttctt tatctttccc atattcagtc tttcgcacaa 1921 accatacact ctcgctcact tctatgccaa aggcaaggct gataaacaaa tgttggtggg 1981 atttaatatt ttcaacagaa attttcttac tctgctttaa aagacttctt cgcatctcaa 2041 tctcttatcc tgttttatgg acagatttcc tgttggccca acattgcgtg cggttgtgtt 2101 gacccaattt catcacttca actagacaca gccatccaag acatgaaaag aaaagctcaa 2161 attcaaaaat aaaaccaaag gtcttccaag tataacaaaa actagaaaca acatcctgta 2221 aaactcaata aaaaaaaaac aaaaacaaca aaaaaccaag gcaaaccaca acgactaaca 2281 acaattgcaa aaggcaaaca gagaaacacc attctcatca ataataacaa caacgaacaa 2341 cggagtaaca tacaaaagcc tttttcacaa ggcatgttta tacctgattc actgcgtagc 2401 tgtatgatcg agacggacgt taactcttat ctgcaaacat catcctcagg acaggtgctg 2461 aacttatacg tggatgagtt tcatccgttc attgaagccc tgttgccata tgtcaaatca 2521 ttttcgtact cgtggttcaa cttacaagca gccaagcgta aatactacaa gaaacatgag 2581 aaacgcatgt cattggagga ggagcgacat tgcaaggatg aactacagaa cgaaaaggct 2641 gaggttaaac agaaatgggc ttcccgtttg ctgggaaaat tacgcaaaga cataacccaa 2701 gaatgccgcg aagactttgt acagtccata acgggcaaac gcaaatcgat atgtgttctc 2761 tccaatcccg atcagaaagg caaaatgcgt cgcatcgatt gtttgcggca ggcggacaag 2821 gtttggcggc tcgatctagt catggtcata ctcttcaagg ccataccttt ggagagcacc 2881 gatggcgaac gtctggaaaa atctcccgaa tgcatacacc cggctttgtg tgtcaatccc 2941 tatcacatca atgtctcagt gcgtgaactc gatttgtatt tggccaattt catcaatacc 3001 cacgatccat tgagtagtcc tacgcccaca acaccgcctc cgggcacacc ctcaacgcct 3061 tcgctcatgc tctatagcaa tgagcataat gccagcacca acaacaacaa caccaatagc 3121 tcagacaata agaaacacat agaagaagag cgcaagaaca aagacgtaga caacacacca 3181 tttgcaggct acagccacaa tccctacaat ggtgttgtgt gcaatgatat aattttggcc 3241 actggtgttt tctcttccaa ggagctttgg aagctgtcaa aagagaggaa caactctttc 3301 attttagctt ccatattgga agaaaccgcc aatgatctca tccaggctag ctcgatcaaa 3361 ttggagcatc cggcggctgc ctatgagtgc aatacatatc aaatgtcagc ctcaggagct 3421 ccactgggtt cggtggtggg aggagttaac agtgcgggta tggtgacagc aagtgatggc 3481 agggcctcgg ttagtgcttc catggtattg ccctcgggtt acagcattga ctttgtggat 3541 ccacgcagca gcatgcatct ctcaaactcc tctctgctga gggcctcttc ggctaccacc 3601 tgcaaaagtg atcccaatgg ctcgccacag gatggcagca gtttctctgt gatattgagg 3661 caaaatgaag acaatggcag caatggcgga gccgctgcca gcaataatgc cgatgatcct 3721 gctctacaga ggtacacgcc caccagcaat agagtgttgt tgagtatggg gcaaatgagg 3781 ccaggagaag tgcttatgca acacaatgtc agctcttcct tggtgccaaa ctcggttagc 3841 cctgctttgt attatcccca gcagaacagt cccaactcca atgctaatga ggccgccgaa 3901 gaagcccatc atcagcaaca ccatcatcag cagcaacaac accaccagca tcatcatcat 3961 caacatcaac tgcatcaggc atccgctaca cccaaatatg ccaccgagtt ggtcaaccac 4021 ggtcaggata tgtcggaatt tgtggcttat gtctgccagg atactggggg tatacatgcc 4081 gccaatgcgg gcgatccttc cgacttacat gtgcatcatc accaaacgtc ttcccatttt 4141 caattgcagc atgctgctgc cgccgctgct gtgggtcggg gtcccaagat ttcagcagtc 4201 tcggctgccg cagctgcggc acattaccag caatacagca ccatgttgcc accaccaccg 4261 ctaccgccta tggcccggcc ggtggccata atacgttcga cgggggattt aaccatggtg 4321 gcgtcaccac cctcatctgc cgccatatca ccgccccctc tgacgagtgt atcctcggct 4381 ggtgattcgc cacgacatca tcaccagagt ttgcagcatc atcatccttc ctcacatcat 4441 catcatcacc accatcatca tggacatcag cagcagcaac agcaacatca tcaggcacag 4501 cagcaacaca ccactatcga tcacacctcg aattccagca gtggcctaag ctcaatgact 4561 tcgaaactaa ccaacacaac cgcctccacc agttccgccc aagagtctac aaccagcacc 4621 ataactgtgg gcagcaataa taattcttcc gatttggtgg tggcctctac agcgtcggca 4681 tcaccgcctc cagcacccac acaatcgccg catgcacaca tcatagatgt ggcaagatgt 4741 aagacatcgc ccacttcatc ggcggcggca gcagttgcgg tgtccacacc cacatcggcg 4801 ttgacgcgta tatcggccca accgtatccc aatacgaatg ggcgtgaata ctttaatcat 4861 ttccatacac aaaccacacc gctcttgggt tataccacca tgtcgggggt catcagtcct 4921 acaaatctta gcctctattc atctacaacg ggtgttacat cgcatcgcac cacccccagg 4981 tcacgctgga attcctcttt tctttccatg gaagatgatt tcaacatgat gtcccacaca 5041 ctgacaagca caaatccaga agccactcca gtcatactta tggaagattc tggtcgttac 5101 agtgatgaat atgtcacaag tcgtgattat gttacatgat tataaatgca tcaatcgttt 5161 tatatgccct actagaactg caatcacagc aacagacagc aacaataata acaaacaaac 5221 caaaactgta agaaataata acactactat tctatacata catatatata tatacataca 5281 tctattctat actgtaacta tagatacaac tagaatattt atatataaaa aaattattat 5341 tattatttat tatttttata taattaagag aagagagaaa aaacaaaaac acttgtttta 5401 ggaaatttat ttgcaagcaa acatgttgaa atgtttgaga ggaaatatta tatacacata 5461 tatagctcaa ggcaaatccc taagcagtta tagatcatga aaaaagtcgg agttcgaggc 5521 aattggatac accaatgaag agaaagtata aagttcaaat gaaaattcaa tttgaagcta 5581 agatttcatt gtttttggta ttgtttttat ttaatgcttg aagaagataa tatagctcaa 5641 ggtcttagct gtttttaaca atttgaatct atttcctaag ttaattaaat caaaagtttt 5701 agggaaaaaa ctgatttatt aacaaaattt atataaatca tacgcaacct gggcaaaaaa 5761 tcagttttta attaatatct tattttaaac ggatttttgt atggtttttc tttgttttat