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LOCUS XM_059366392 5676 bp mRNA linear INV 02-SEP-2023 transcript variant X3, mRNA. ACCESSION XM_059366392 VERSION XM_059366392.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5676 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5676 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 2230..4995 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222375.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacgtac 721 ggaacgggaa aaaaatcaca aaacgaaaac aaaaataagt cgcacacgat tcgaaaaaaa 781 taaaacaaaa acaaaaacaa caagaagcag aacgaatttt cttttttcct tctttttctg 841 agtgctcgac tgcctgcttg cctgcctgcc tgtcgtcgtc tgtctgtctg tcgtctcttc 901 ttttgcgttt gaacaaaaaa attgtgtaac aaaaattcaa aataaatttt ttcaccaaaa 961 cccatatccc tttcaacgaa ttttaaaacg aaaaaaatcc actgtaaaag gaaaatttgt 1021 gcaaaaaagg gcttcttagc caggaaatgt gaaatgtgaa aagcaaatgg agttgacagt 1081 gattggcaaa tgtcggtgca agaaatcgat aatgggcaaa gcaagcggcc caaccaagta 1141 caatagcaac aataaaacaa ctgtatgcac aaaaataaat tttaattttt tataaaaaaa 1201 tgtaagcaac agcaaaaaaa gacaataaga aatttggaaa taaaaagaaa caacaacaac 1261 taaaataaaa taatagcaaa tagcaaaatg ttcgatatcc gttgagttcc tataacaaat 1321 ggctgataaa caacaacgac aacaacatac cacaacataa ataaaataac aactacagca 1381 cgtacaacca acaacatctc tctctctctc tctctctctg tctctctcgc tcaacacact 1441 ctcatagcaa caccaaaaaa atcaaatcaa caaaagaaaa ctctgcaaag caaaataaat 1501 aaataaaaca acaactacaa aagcagtctc tctgacaaca acaaaagaaa aagcagccgc 1561 atccataggc caccagacaa tgataatgtc gttgataatg ttgccacctg ccacctttaa 1621 agatactgtc tacaaaacat tgccaatgtt gttacgagcc taaagggata tcctcaaaaa 1681 aaaaaacaaa cagcagcgca gcagttgtca tctgtctact tcgacttctt cgtcttcttc 1741 tttctttatc tttcccatat tcagtctttc gcacaaacca tacactctcg ctcacttcta 1801 tgccaaaggc aaggctgata aacaaatgtt ggtgggattt aatattttca acagaaattt 1861 tcttactctg ctttaaaaga cttcttcgca tctcaatctc ttatcctgtt ttatggacag 1921 atttcctgtt ggcccaacat tgcgtgcggt tgtgttgacc caatttcatc acttcaacta 1981 gacacagcca tccaagacat gaaaagaaaa gctcaaattc aaaaataaaa ccaaaggtct 2041 tccaagtata acaaaaacta gaaacaacat cctgtaaaac tcaataaaaa aaaaacaaaa 2101 acaacaaaaa accaaggcaa accacaacga ctaacaacaa ttgcaaaagg caaacagaga 2161 aacaccattc tcatcaataa taacaacaac gaacaacgga gtaacataca aaagcctttt 2221 tcacaaggca tgtttatacc tgattcactg cgtagctgta tgatcgagac ggacgttaac 2281 tcttatctgc aaacatcatc ctcaggacag gtgctgaact tatacgtgga tgagtttcat 2341 ccgttcattg aagccctgtt gccatatgtc aaatcatttt cgtactcgtg gttcaactta 2401 caagcagcca agcgtaaata ctacaagaaa catgagaaac gcatgtcatt ggaggaggag 2461 cgacattgca aggatgaact acagaacgaa aaggctgagg ttaaacagaa atgggcttcc 2521 cgtttgctgg gaaaattacg caaagacata acccaagaat gccgcgaaga ctttgtacag 2581 tccataacgg gcaaacgcaa atcgatatgt gttctctcca atcccgatca gaaaggcaaa 2641 atgcgtcgca tcgattgttt gcggcaggcg gacaaggttt ggcggctcga tctagtcatg 2701 gtcatactct tcaaggccat acctttggag agcaccgatg gcgaacgtct ggaaaaatct 2761 cccgaatgca tacacccggc tttgtgtgtc aatccctatc acatcaatgt ctcagtgcgt 2821 gaactcgatt tgtatttggc caatttcatc aatacccacg atccattgag tagtcctacg 2881 cccacaacac cgcctccggg cacaccctca acgccttcgc tcatgctcta tagcaatgag 2941 cataatgcca gcaccaacaa caacaacacc aatagctcag acaataagaa acacatagaa 3001 gaagagcgca agaacaaaga cgtagacaac acaccatttg caggctacag ccacaatccc 3061 tacaatggtg ttgtgtgcaa tgatataatt ttggccactg gtgttttctc ttccaaggag 3121 ctttggaagc tgtcaaaaga gaggaacaac tctttcattt tagcttccat attggaagaa 3181 accgccaatg atctcatcca ggctagctcg atcaaattgg agcatccggc ggctgcctat 3241 gagtgcaata catatcaaat gtcagcctca ggagctccac tgggttcggt ggtgggagga 3301 gttaacagtg cgggtatggt gacagcaagt gatggcaggg cctcggttag tgcttccatg 3361 gtattgccct cgggttacag cattgacttt gtggatccac gcagcagcat gcatctctca 3421 aactcctctc tgctgagggc ctcttcggct accacctgca aaagtgatcc caatggctcg 3481 ccacaggatg gcagcagttt ctctgtgata ttgaggcaaa atgaagacaa tggcagcaat 3541 ggcggagccg ctgccagcaa taatgccgat gatcctgctc tacagaggta cacgcccacc 3601 agcaatagag tgttgttgag tatggggcaa atgaggccag gagaagtgct tatgcaacac 3661 aatgtcagct cttccttggt gccaaactcg gttagccctg ctttgtatta tccccagcag 3721 aacagtccca actccaatgc taatgaggcc gccgaagaag cccatcatca gcaacaccat 3781 catcagcagc aacaacacca ccagcatcat catcatcaac atcaactgca tcaggcatcc 3841 gctacaccca aatatgccac cgagttggtc aaccacggtc aggatatgtc ggaatttgtg 3901 gcttatgtct gccaggatac tgggggtata catgccgcca atgcgggcga tccttccgac 3961 ttacatgtgc atcatcacca aacgtcttcc cattttcaat tgcagcatgc tgctgccgcc 4021 gctgctgtgg gtcggggtcc caagatttca gcagtctcgg ctgccgcagc tgcggcacat 4081 taccagcaat acagcaccat gttgccacca ccaccgctac cgcctatggc ccggccggtg 4141 gccataatac gttcgacggg ggatttaacc atggtggcgt caccaccctc atctgccgcc 4201 atatcaccgc cccctctgac gagtgtatcc tcggctggtg attcgccacg acatcatcac 4261 cagagtttgc agcatcatca tccttcctca catcatcatc atcaccacca tcatcatgga 4321 catcagcagc agcaacagca acatcatcag gcacagcagc aacacaccac tatcgatcac 4381 acctcgaatt ccagcagtgg cctaagctca atgacttcga aactaaccaa cacaaccgcc 4441 tccaccagtt ccgcccaaga gtctacaacc agcaccataa ctgtgggcag caataataat 4501 tcttccgatt tggtggtggc ctctacagcg tcggcatcac cgcctccagc acccacacaa 4561 tcgccgcatg cacacatcat agatgtggca agatgtaaga catcgcccac ttcatcggcg 4621 gcggcagcag ttgcggtgtc cacacccaca tcggcgttga cgcgtatatc ggcccaaccg 4681 tatcccaata cgaatgggcg tgaatacttt aatcatttcc atacacaaac cacaccgctc 4741 ttgggttata ccaccatgtc gggggtcatc agtcctacaa atcttagcct ctattcatct 4801 acaacgggtg ttacatcgca tcgcaccacc cccaggtcac gctggaattc ctcttttctt 4861 tccatggaag atgatttcaa catgatgtcc cacacactga caagcacaaa tccagaagcc 4921 actccagtca tacttatgga agattctggt cgttacagtg atgaatatgt cacaagtcgt 4981 gattatgtta catgattata aatgcatcaa tcgttttata tgccctacta gaactgcaat 5041 cacagcaaca gacagcaaca ataataacaa acaaaccaaa actgtaagaa ataataacac 5101 tactattcta tacatacata tatatatata catacatcta ttctatactg taactataga 5161 tacaactaga atatttatat ataaaaaaat tattattatt atttattatt tttatataat 5221 taagagaaga gagaaaaaac aaaaacactt gttttaggaa atttatttgc aagcaaacat 5281 gttgaaatgt ttgagaggaa atattatata cacatatata gctcaaggca aatccctaag 5341 cagttataga tcatgaaaaa agtcggagtt cgaggcaatt ggatacacca atgaagagaa 5401 agtataaagt tcaaatgaaa attcaatttg aagctaagat ttcattgttt ttggtattgt 5461 ttttatttaa tgcttgaaga agataatata gctcaaggtc ttagctgttt ttaacaattt 5521 gaatctattt cctaagttaa ttaaatcaaa agttttaggg aaaaaactga tttattaaca 5581 aaatttatat aaatcatacg caacctgggc aaaaaatcag tttttaatta atatcttatt 5641 ttaaacggat ttttgtatgg tttttctttg ttttat