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LOCUS XM_059366391 5911 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_059366391 VERSION XM_059366391.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5911 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5911 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 2465..5230 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222374.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacgtac 721 ggaacgggaa aaaaatcaca aaacgaaaac aaaaataagt cgcacacgat tcgaaaaaaa 781 taaaacaaaa acaaaaacaa caagaagcag aacgaatttt cttttttcct tctttttctg 841 agtgctcgac tgcctgcttg cctgcctgcc tgtcgtcgtc tgtctgtctg tcgtctcttc 901 ttttgcgttt gaacaaaaaa attgtgtaac aaaaattcaa aataaatttt ttcaccaaaa 961 cccatatccc tttcaacgaa ttttaaaacg aaaaaaatcc actgtaaaag gaaaatttgt 1021 gcaaaaaagg gcttcttagc caggaaatgt gaaatgtgaa aagcaaatgg agttgacagt 1081 gattggcaaa tgtcggtgca agaaatcgat aatgggcaaa gcaagcggcc caaccaagtg 1141 tacgaaaaat taactttttt gaattaaata atgaatagaa gtgtaaaaag tttttaaaca 1201 aaggcaaaaa ataactacgt tgtaaaaaaa acaaaaaaaa aaacgttaaa aaaaattatc 1261 atctagactt ttctttcacc ttgcagtttt tcaccctttc gatccatgca cccagttgtc 1321 taccttaaac catgttggca ttactgcaac acccaaataa agcgatacca aacaacaata 1381 gcaacaataa aacaactgta tgcacaaaaa taaattttaa ttttttataa aaaaatgtaa 1441 gcaacagcaa aaaaagacaa taagaaattt ggaaataaaa agaaacaaca acaactaaaa 1501 taaaataata gcaaatagca aaatgttcga tatccgttga gttcctataa caaatggctg 1561 ataaacaaca acgacaacaa cataccacaa cataaataaa ataacaacta cagcacgtac 1621 aaccaacaac atctctctct ctctctctct ctctgtctct ctcgctcaac acactctcat 1681 agcaacacca aaaaaatcaa atcaacaaaa gaaaactctg caaagcaaaa taaataaata 1741 aaacaacaac tacaaaagca gtctctctga caacaacaaa agaaaaagca gccgcatcca 1801 taggccacca gacaatgata atgtcgttga taatgttgcc acctgccacc tttaaagata 1861 ctgtctacaa aacattgcca atgttgttac gagcctaaag ggatatcctc aaaaaaaaaa 1921 acaaacagca gcgcagcagt tgtcatctgt ctacttcgac ttcttcgtct tcttctttct 1981 ttatctttcc catattcagt ctttcgcaca aaccatacac tctcgctcac ttctatgcca 2041 aaggcaaggc tgataaacaa atgttggtgg gatttaatat tttcaacaga aattttctta 2101 ctctgcttta aaagacttct tcgcatctca atctcttatc ctgttttatg gacagatttc 2161 ctgttggccc aacattgcgt gcggttgtgt tgacccaatt tcatcacttc aactagacac 2221 agccatccaa gacatgaaaa gaaaagctca aattcaaaaa taaaaccaaa ggtcttccaa 2281 gtataacaaa aactagaaac aacatcctgt aaaactcaat aaaaaaaaaa caaaaacaac 2341 aaaaaaccaa ggcaaaccac aacgactaac aacaattgca aaaggcaaac agagaaacac 2401 cattctcatc aataataaca acaacgaaca acggagtaac atacaaaagc ctttttcaca 2461 aggcatgttt atacctgatt cactgcgtag ctgtatgatc gagacggacg ttaactctta 2521 tctgcaaaca tcatcctcag gacaggtgct gaacttatac gtggatgagt ttcatccgtt 2581 cattgaagcc ctgttgccat atgtcaaatc attttcgtac tcgtggttca acttacaagc 2641 agccaagcgt aaatactaca agaaacatga gaaacgcatg tcattggagg aggagcgaca 2701 ttgcaaggat gaactacaga acgaaaaggc tgaggttaaa cagaaatggg cttcccgttt 2761 gctgggaaaa ttacgcaaag acataaccca agaatgccgc gaagactttg tacagtccat 2821 aacgggcaaa cgcaaatcga tatgtgttct ctccaatccc gatcagaaag gcaaaatgcg 2881 tcgcatcgat tgtttgcggc aggcggacaa ggtttggcgg ctcgatctag tcatggtcat 2941 actcttcaag gccatacctt tggagagcac cgatggcgaa cgtctggaaa aatctcccga 3001 atgcatacac ccggctttgt gtgtcaatcc ctatcacatc aatgtctcag tgcgtgaact 3061 cgatttgtat ttggccaatt tcatcaatac ccacgatcca ttgagtagtc ctacgcccac 3121 aacaccgcct ccgggcacac cctcaacgcc ttcgctcatg ctctatagca atgagcataa 3181 tgccagcacc aacaacaaca acaccaatag ctcagacaat aagaaacaca tagaagaaga 3241 gcgcaagaac aaagacgtag acaacacacc atttgcaggc tacagccaca atccctacaa 3301 tggtgttgtg tgcaatgata taattttggc cactggtgtt ttctcttcca aggagctttg 3361 gaagctgtca aaagagagga acaactcttt cattttagct tccatattgg aagaaaccgc 3421 caatgatctc atccaggcta gctcgatcaa attggagcat ccggcggctg cctatgagtg 3481 caatacatat caaatgtcag cctcaggagc tccactgggt tcggtggtgg gaggagttaa 3541 cagtgcgggt atggtgacag caagtgatgg cagggcctcg gttagtgctt ccatggtatt 3601 gccctcgggt tacagcattg actttgtgga tccacgcagc agcatgcatc tctcaaactc 3661 ctctctgctg agggcctctt cggctaccac ctgcaaaagt gatcccaatg gctcgccaca 3721 ggatggcagc agtttctctg tgatattgag gcaaaatgaa gacaatggca gcaatggcgg 3781 agccgctgcc agcaataatg ccgatgatcc tgctctacag aggtacacgc ccaccagcaa 3841 tagagtgttg ttgagtatgg ggcaaatgag gccaggagaa gtgcttatgc aacacaatgt 3901 cagctcttcc ttggtgccaa actcggttag ccctgctttg tattatcccc agcagaacag 3961 tcccaactcc aatgctaatg aggccgccga agaagcccat catcagcaac accatcatca 4021 gcagcaacaa caccaccagc atcatcatca tcaacatcaa ctgcatcagg catccgctac 4081 acccaaatat gccaccgagt tggtcaacca cggtcaggat atgtcggaat ttgtggctta 4141 tgtctgccag gatactgggg gtatacatgc cgccaatgcg ggcgatcctt ccgacttaca 4201 tgtgcatcat caccaaacgt cttcccattt tcaattgcag catgctgctg ccgccgctgc 4261 tgtgggtcgg ggtcccaaga tttcagcagt ctcggctgcc gcagctgcgg cacattacca 4321 gcaatacagc accatgttgc caccaccacc gctaccgcct atggcccggc cggtggccat 4381 aatacgttcg acgggggatt taaccatggt ggcgtcacca ccctcatctg ccgccatatc 4441 accgccccct ctgacgagtg tatcctcggc tggtgattcg ccacgacatc atcaccagag 4501 tttgcagcat catcatcctt cctcacatca tcatcatcac caccatcatc atggacatca 4561 gcagcagcaa cagcaacatc atcaggcaca gcagcaacac accactatcg atcacacctc 4621 gaattccagc agtggcctaa gctcaatgac ttcgaaacta accaacacaa ccgcctccac 4681 cagttccgcc caagagtcta caaccagcac cataactgtg ggcagcaata ataattcttc 4741 cgatttggtg gtggcctcta cagcgtcggc atcaccgcct ccagcaccca cacaatcgcc 4801 gcatgcacac atcatagatg tggcaagatg taagacatcg cccacttcat cggcggcggc 4861 agcagttgcg gtgtccacac ccacatcggc gttgacgcgt atatcggccc aaccgtatcc 4921 caatacgaat gggcgtgaat actttaatca tttccataca caaaccacac cgctcttggg 4981 ttataccacc atgtcggggg tcatcagtcc tacaaatctt agcctctatt catctacaac 5041 gggtgttaca tcgcatcgca ccacccccag gtcacgctgg aattcctctt ttctttccat 5101 ggaagatgat ttcaacatga tgtcccacac actgacaagc acaaatccag aagccactcc 5161 agtcatactt atggaagatt ctggtcgtta cagtgatgaa tatgtcacaa gtcgtgatta 5221 tgttacatga ttataaatgc atcaatcgtt ttatatgccc tactagaact gcaatcacag 5281 caacagacag caacaataat aacaaacaaa ccaaaactgt aagaaataat aacactacta 5341 ttctatacat acatatatat atatacatac atctattcta tactgtaact atagatacaa 5401 ctagaatatt tatatataaa aaaattatta ttattattta ttatttttat ataattaaga 5461 gaagagagaa aaaacaaaaa cacttgtttt aggaaattta tttgcaagca aacatgttga 5521 aatgtttgag aggaaatatt atatacacat atatagctca aggcaaatcc ctaagcagtt 5581 atagatcatg aaaaaagtcg gagttcgagg caattggata caccaatgaa gagaaagtat 5641 aaagttcaaa tgaaaattca atttgaagct aagatttcat tgtttttggt attgttttta 5701 tttaatgctt gaagaagata atatagctca aggtcttagc tgtttttaac aatttgaatc 5761 tatttcctaa gttaattaaa tcaaaagttt tagggaaaaa actgatttat taacaaaatt 5821 tatataaatc atacgcaacc tgggcaaaaa atcagttttt aattaatatc ttattttaaa 5881 cggatttttg tatggttttt ctttgtttta t