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LOCUS XM_059366390 5741 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_059366390 VERSION XM_059366390.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5741 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5741 /gene="LOC106083366" /note="homeobox protein cut; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:106083366" CDS 2295..5060 /gene="LOC106083366" /codon_start=1 /product="homeobox protein cut isoform X1" /protein_id="XP_059222373.1" /db_xref="GeneID:106083366" /translation="MFIPDSLRSCMIETDVNSYLQTSSSGQVLNLYVDEFHPFIEALL PYVKSFSYSWFNLQAAKRKYYKKHEKRMSLEEERHCKDELQNEKAEVKQKWASRLLGK LRKDITQECREDFVQSITGKRKSICVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVIL FKAIPLESTDGERLEKSPECIHPALCVNPYHINVSVRELDLYLANFINTHDPLSSPTP TTPPPGTPSTPSLMLYSNEHNASTNNNNTNSSDNKKHIEEERKNKDVDNTPFAGYSHN PYNGVVCNDIILATGVFSSKELWKLSKERNNSFILASILEETANDLIQASSIKLEHPA AAYECNTYQMSASGAPLGSVVGGVNSAGMVTASDGRASVSASMVLPSGYSIDFVDPRS SMHLSNSSLLRASSATTCKSDPNGSPQDGSSFSVILRQNEDNGSNGGAAASNNADDPA LQRYTPTSNRVLLSMGQMRPGEVLMQHNVSSSLVPNSVSPALYYPQQNSPNSNANEAA EEAHHQQHHHQQQQHHQHHHHQHQLHQASATPKYATELVNHGQDMSEFVAYVCQDTGG IHAANAGDPSDLHVHHHQTSSHFQLQHAAAAAAVGRGPKISAVSAAAAAAHYQQYSTM LPPPPLPPMARPVAIIRSTGDLTMVASPPSSAAISPPPLTSVSSAGDSPRHHHQSLQH HHPSSHHHHHHHHHGHQQQQQQHHQAQQQHTTIDHTSNSSSGLSSMTSKLTNTTASTS SAQESTTSTITVGSNNNSSDLVVASTASASPPPAPTQSPHAHIIDVARCKTSPTSSAA AAVAVSTPTSALTRISAQPYPNTNGREYFNHFHTQTTPLLGYTTMSGVISPTNLSLYS STTGVTSHRTTPRSRWNSSFLSMEDDFNMMSHTLTSTNPEATPVILMEDSGRYSDEYV TSRDYVT" ORIGIN 1 gacgacatag aatttgagca gagcgccata cggtaaagcc aatagtgaca gcaaaacagc 61 caacaagcaa gagcccatca taacacatta aatggtgagt gaggaaaaac gtttcgtctt 121 gtcttgtctg gtctggctct ggtctggtat cgtacgtttc gtttgctcag actaaaaggg 181 gaaaatgtga aaactgctta aacggaaaaa taaaaaaaaa ataattataa aaaaacaaaa 241 aaaaaattaa aagcctttat ttattaagtg gagtaacaga aggaggtggt gaaaagttta 301 aaacagaatt gtagtttttc ctgtgtaaca tgcttaaaag aaaattgaag aaaaatcaaa 361 aataaaaatg atgtttggta gtttaacaaa ctaaatcaat tatttttttg tttaacgaaa 421 aagtgaaagt tatgattttt ctaatattaa gaaattgaaa aaaagtatta tgaaaaagtt 481 tacttaaaac tcacagccac atagaaatgt ctcgttaaaa tacatatgtg tggctaggta 541 tggcatatac atatgtacgc cacacacatg cacactctca cctagccatg cacagtatag 601 gccaaaaagt tatttttata taatgtagag gaaacgaaaa cattgccgag aaaaatactc 661 actcattcac tcgctcactc actaggctgc tcgctcgcat gtcaaaggcg aaaaacgtac 721 ggaacgggaa aaaaatcaca aaacgaaaac aaaaataagt cgcacacgat tcgaaaaaaa 781 taaaacaaaa acaaaaacaa caagaagcag aacgaatttt cttttttcct tctttttctg 841 agtgctcgac tgcctgcttg cctgcctgcc tgtcgtcgtc tgtctgtctg tcgtctcttc 901 ttttgcgttt gaacaaaaaa attgtgtaac aaaaattcaa aataaatttt ttcaccaaaa 961 cccatatccc tttcaacgaa ttttaaaacg aaaaaaatcc actgtaaaag gaaaatttgt 1021 gcaaaaaagg gcttcttagc caggaaatgt gaaatgtgaa aagcaaatgg agttgacagt 1081 gattggcaaa tgtcggtgca agaaatcgat aatgggcaaa gcaagcggcc caaccaagtt 1141 gagtcctcgt cacgattgtg tgatttattt tccctaaaaa atctctgttt aatttaaaaa 1201 tcagacaata gcaacaataa aacaactgta tgcacaaaaa taaattttaa ttttttataa 1261 aaaaatgtaa gcaacagcaa aaaaagacaa taagaaattt ggaaataaaa agaaacaaca 1321 acaactaaaa taaaataata gcaaatagca aaatgttcga tatccgttga gttcctataa 1381 caaatggctg ataaacaaca acgacaacaa cataccacaa cataaataaa ataacaacta 1441 cagcacgtac aaccaacaac atctctctct ctctctctct ctctgtctct ctcgctcaac 1501 acactctcat agcaacacca aaaaaatcaa atcaacaaaa gaaaactctg caaagcaaaa 1561 taaataaata aaacaacaac tacaaaagca gtctctctga caacaacaaa agaaaaagca 1621 gccgcatcca taggccacca gacaatgata atgtcgttga taatgttgcc acctgccacc 1681 tttaaagata ctgtctacaa aacattgcca atgttgttac gagcctaaag ggatatcctc 1741 aaaaaaaaaa acaaacagca gcgcagcagt tgtcatctgt ctacttcgac ttcttcgtct 1801 tcttctttct ttatctttcc catattcagt ctttcgcaca aaccatacac tctcgctcac 1861 ttctatgcca aaggcaaggc tgataaacaa atgttggtgg gatttaatat tttcaacaga 1921 aattttctta ctctgcttta aaagacttct tcgcatctca atctcttatc ctgttttatg 1981 gacagatttc ctgttggccc aacattgcgt gcggttgtgt tgacccaatt tcatcacttc 2041 aactagacac agccatccaa gacatgaaaa gaaaagctca aattcaaaaa taaaaccaaa 2101 ggtcttccaa gtataacaaa aactagaaac aacatcctgt aaaactcaat aaaaaaaaaa 2161 caaaaacaac aaaaaaccaa ggcaaaccac aacgactaac aacaattgca aaaggcaaac 2221 agagaaacac cattctcatc aataataaca acaacgaaca acggagtaac atacaaaagc 2281 ctttttcaca aggcatgttt atacctgatt cactgcgtag ctgtatgatc gagacggacg 2341 ttaactctta tctgcaaaca tcatcctcag gacaggtgct gaacttatac gtggatgagt 2401 ttcatccgtt cattgaagcc ctgttgccat atgtcaaatc attttcgtac tcgtggttca 2461 acttacaagc agccaagcgt aaatactaca agaaacatga gaaacgcatg tcattggagg 2521 aggagcgaca ttgcaaggat gaactacaga acgaaaaggc tgaggttaaa cagaaatggg 2581 cttcccgttt gctgggaaaa ttacgcaaag acataaccca agaatgccgc gaagactttg 2641 tacagtccat aacgggcaaa cgcaaatcga tatgtgttct ctccaatccc gatcagaaag 2701 gcaaaatgcg tcgcatcgat tgtttgcggc aggcggacaa ggtttggcgg ctcgatctag 2761 tcatggtcat actcttcaag gccatacctt tggagagcac cgatggcgaa cgtctggaaa 2821 aatctcccga atgcatacac ccggctttgt gtgtcaatcc ctatcacatc aatgtctcag 2881 tgcgtgaact cgatttgtat ttggccaatt tcatcaatac ccacgatcca ttgagtagtc 2941 ctacgcccac aacaccgcct ccgggcacac cctcaacgcc ttcgctcatg ctctatagca 3001 atgagcataa tgccagcacc aacaacaaca acaccaatag ctcagacaat aagaaacaca 3061 tagaagaaga gcgcaagaac aaagacgtag acaacacacc atttgcaggc tacagccaca 3121 atccctacaa tggtgttgtg tgcaatgata taattttggc cactggtgtt ttctcttcca 3181 aggagctttg gaagctgtca aaagagagga acaactcttt cattttagct tccatattgg 3241 aagaaaccgc caatgatctc atccaggcta gctcgatcaa attggagcat ccggcggctg 3301 cctatgagtg caatacatat caaatgtcag cctcaggagc tccactgggt tcggtggtgg 3361 gaggagttaa cagtgcgggt atggtgacag caagtgatgg cagggcctcg gttagtgctt 3421 ccatggtatt gccctcgggt tacagcattg actttgtgga tccacgcagc agcatgcatc 3481 tctcaaactc ctctctgctg agggcctctt cggctaccac ctgcaaaagt gatcccaatg 3541 gctcgccaca ggatggcagc agtttctctg tgatattgag gcaaaatgaa gacaatggca 3601 gcaatggcgg agccgctgcc agcaataatg ccgatgatcc tgctctacag aggtacacgc 3661 ccaccagcaa tagagtgttg ttgagtatgg ggcaaatgag gccaggagaa gtgcttatgc 3721 aacacaatgt cagctcttcc ttggtgccaa actcggttag ccctgctttg tattatcccc 3781 agcagaacag tcccaactcc aatgctaatg aggccgccga agaagcccat catcagcaac 3841 accatcatca gcagcaacaa caccaccagc atcatcatca tcaacatcaa ctgcatcagg 3901 catccgctac acccaaatat gccaccgagt tggtcaacca cggtcaggat atgtcggaat 3961 ttgtggctta tgtctgccag gatactgggg gtatacatgc cgccaatgcg ggcgatcctt 4021 ccgacttaca tgtgcatcat caccaaacgt cttcccattt tcaattgcag catgctgctg 4081 ccgccgctgc tgtgggtcgg ggtcccaaga tttcagcagt ctcggctgcc gcagctgcgg 4141 cacattacca gcaatacagc accatgttgc caccaccacc gctaccgcct atggcccggc 4201 cggtggccat aatacgttcg acgggggatt taaccatggt ggcgtcacca ccctcatctg 4261 ccgccatatc accgccccct ctgacgagtg tatcctcggc tggtgattcg ccacgacatc 4321 atcaccagag tttgcagcat catcatcctt cctcacatca tcatcatcac caccatcatc 4381 atggacatca gcagcagcaa cagcaacatc atcaggcaca gcagcaacac accactatcg 4441 atcacacctc gaattccagc agtggcctaa gctcaatgac ttcgaaacta accaacacaa 4501 ccgcctccac cagttccgcc caagagtcta caaccagcac cataactgtg ggcagcaata 4561 ataattcttc cgatttggtg gtggcctcta cagcgtcggc atcaccgcct ccagcaccca 4621 cacaatcgcc gcatgcacac atcatagatg tggcaagatg taagacatcg cccacttcat 4681 cggcggcggc agcagttgcg gtgtccacac ccacatcggc gttgacgcgt atatcggccc 4741 aaccgtatcc caatacgaat gggcgtgaat actttaatca tttccataca caaaccacac 4801 cgctcttggg ttataccacc atgtcggggg tcatcagtcc tacaaatctt agcctctatt 4861 catctacaac gggtgttaca tcgcatcgca ccacccccag gtcacgctgg aattcctctt 4921 ttctttccat ggaagatgat ttcaacatga tgtcccacac actgacaagc acaaatccag 4981 aagccactcc agtcatactt atggaagatt ctggtcgtta cagtgatgaa tatgtcacaa 5041 gtcgtgatta tgttacatga ttataaatgc atcaatcgtt ttatatgccc tactagaact 5101 gcaatcacag caacagacag caacaataat aacaaacaaa ccaaaactgt aagaaataat 5161 aacactacta ttctatacat acatatatat atatacatac atctattcta tactgtaact 5221 atagatacaa ctagaatatt tatatataaa aaaattatta ttattattta ttatttttat 5281 ataattaaga gaagagagaa aaaacaaaaa cacttgtttt aggaaattta tttgcaagca 5341 aacatgttga aatgtttgag aggaaatatt atatacacat atatagctca aggcaaatcc 5401 ctaagcagtt atagatcatg aaaaaagtcg gagttcgagg caattggata caccaatgaa 5461 gagaaagtat aaagttcaaa tgaaaattca atttgaagct aagatttcat tgtttttggt 5521 attgttttta tttaatgctt gaagaagata atatagctca aggtcttagc tgtttttaac 5581 aatttgaatc tatttcctaa gttaattaaa tcaaaagttt tagggaaaaa actgatttat 5641 taacaaaatt tatataaatc atacgcaacc tgggcaaaaa atcagttttt aattaatatc 5701 ttattttaaa cggatttttg tatggttttt ctttgtttta t