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LOCUS XM_059366384 2433 bp mRNA linear INV 02-SEP-2023 (LOC106090557), transcript variant X1, mRNA. ACCESSION XM_059366384 VERSION XM_059366384.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2433 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..2433 /gene="LOC106090557" /note="nuclear pore complex protein Nup88; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:106090557" CDS 123..2324 /gene="LOC106090557" /codon_start=1 /product="nuclear pore complex protein Nup88 isoform X1" /protein_id="XP_059222367.1" /db_xref="GeneID:106090557" /translation="MASTDCLQLNKTAMFAKIRESLAAEKHLYTQNLVECKDDLLYCW DSKESCLLVLNWRATSTRGLDQIKYQTLVPSIPFSFEVERIVASNEGSLVALAGLKGL CIMEMPRRWGANGQYMDGKSRITCRTSNLDGHFFTNNPHLELRQLRWHPASPTDSHLL ALLSDNTIRVYDNSSLRHVWQVGPIPLKTDGNLNPSTVYALGESAVDFDVAPAVNVAE MQMNTTNTTINKDQTVLMNSTRLNQNTNKTIIMNETKANATKNQEKIEWPIVILRENG NIYVLMSGLDTERPRLQGPITITPSTVDNYGLDSCSILVIPSLPPTLVIAESNGKLHH ALFLEAENAEDSFNEVDDSLNIHPSEWTVHVLETVELELGLPKDEVNQPFFCPIHLKR DYINELRYFAYHNTGLHVVTVNFIGELQRFLENEVDSDITTLSTPSHAEYIVCTKIDT GDNVNPVLGFVLLQMPACIVLLLGSGQVMTLKLVIDPKLLIDVQGTSKADMFPTENQD ITQNQLSQVLGPSFVDHIKNMLKRSVTQPILSLDKNANPSPQECYELLTQAVEVLRSQ YLKRHELVRAEFAKRIHTIKLCREQQKQDIKDLEKERETIRDKAHKLAEKFEEISEQQ EVLNKVCQDLMRQANTCLPNNTLAEKEFALEVERINKLTKNMNNSLQKCKESINKQCY HIAKYGENAKKKTFELPETQEKTIKEILLQMNAEIDGQIKEVKRINKVVGI" polyA_site 2433 /gene="LOC106090557" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgtgagcaca tgtgtttata tttgtttgcc ggtttttatt tgcaaaattg tttatttgtg 61 aaatttgtga attatttgga tatttaaaag ttttccttgt gctgtttcaa taatcaagtg 121 tcatggcttc caccgattgt ctgcaattga acaaaacagc catgtttgct aagatacgcg 181 aaagtttggc agctgaaaag catttgtaca cccagaattt ggtggaatgc aaagatgatt 241 tgttgtactg ttgggactcc aaggaatcat gcttattggt cctgaactgg agggcaacat 301 cgaccagggg tttggatcaa atcaaatatc agaccttggt tccctcaata ccctttagtt 361 ttgaagttga acgcattgtg gcttccaatg agggctcttt ggttgccttg gctggcctaa 421 aaggtctttg cattatggaa atgccaagac gctggggtgc aaatggccag tatatggatg 481 gcaaatcaag gatcacctgt cgtacctcta atttggatgg tcacttcttt acaaataatc 541 cacatttgga attacgacaa ttacgctggc atcctgcctc acccaccgac tctcatttgt 601 tggctctttt gtcggacaat accataaggg tttatgataa ttcatcgttg cgccatgttt 661 ggcaagtggg tcccatacca ttgaaaacgg atgggaatct caatccctcc actgtgtatg 721 ctttgggtga atctgctgtg gattttgatg ttgcaccagc tgtaaatgtg gccgaaatgc 781 aaatgaatac gaccaataca accataaaca aggatcaaac agtgctaatg aatagtacaa 841 gacttaatca gaatacaaat aagaccataa taatgaatga aactaaggct aatgccacca 901 aaaaccaaga aaagattgaa tggcccatag tgatccttag agagaatggc aatatatatg 961 tattaatgtc aggcttggat acagaaagac cccgtttaca aggacccatt accataacac 1021 cctctactgt ggataattat ggcttagatt cttgttccat tttggtaata ccctctttgc 1081 cacctacatt agttatagct gagtctaatg gtaaacttca tcacgctttg tttttggaag 1141 ctgaaaatgc cgaagattct ttcaatgaag tggatgatag tcttaatata catccctccg 1201 aatggactgt ccatgtctta gaaactgtgg aactggaatt ggggctaccc aaagatgaag 1261 ttaatcaacc cttcttttgt cccatacatt tgaaaagaga ttacattaat gagctacgtt 1321 attttgccta tcacaatacc ggtctgcatg tggtcaccgt aaatttcata ggagaattac 1381 aaagattttt agaaaatgaa gtcgattctg atatcaccac cttgtcgaca ccctcacatg 1441 ctgagtacat tgtctgcact aaaatcgata caggagataa tgtaaatcct gttctaggat 1501 ttgttctctt gcaaatgccc gcttgcattg tgttgctttt aggcagtggc caagttatga 1561 ctttgaaatt agttatagat ccaaaattac taatcgatgt acagggtaca tccaaagctg 1621 atatgtttcc aacagaaaat caagatataa ctcaaaatca gttgagtcaa gtattgggtc 1681 cctcatttgt ggatcatatt aaaaatatgc ttaaacgctc ggttacccaa cccatattgt 1741 cattggataa aaatgccaat ccttcaccac aagaatgtta tgaattgttg acacaggccg 1801 tggaagtatt gcgttcacag tatttaaaac gccacgaatt ggtaagagca gaatttgcca 1861 agcgcataca cacgattaaa ctatgcaggg agcaacagaa acaggatatc aaagatttgg 1921 aaaaggaaag agaaaccata agagataagg cacataaatt ggcagaaaaa tttgaggaga 1981 ttagcgaaca gcaggaagtt ttaaataaag tatgtcaaga tcttatgcgc caagccaata 2041 cctgtttacc caacaacact ttggccgaaa aggaattcgc cctagaggtg gaacgcatta 2101 ataagctaac caagaacatg aataattccc tacagaagtg taaagaatcc atcaataaac 2161 agtgctatca tattgccaaa tatggtgaga atgcgaaaaa gaaaactttc gaattacccg 2221 aaacccaaga aaaaacaatt aaagaaatct tattgcaaat gaatgcagaa attgatggac 2281 aaattaaaga agtcaaacgc ataaacaaag ttgtaggcat ttaaatcatt tatgccctac 2341 tttctccctc gccgattaaa tatatcaata tcttcatgat ccaataaaag aaaaacaaag 2401 acaatcaaca acttttacaa tttcaacacg taa