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LOCUS XM_059366363 6064 bp mRNA linear INV 02-SEP-2023 ABCA3 (LOC106085149), transcript variant X5, mRNA. ACCESSION XM_059366363 VERSION XM_059366363.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6064 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6064 /gene="LOC106085149" /note="phospholipid-transporting ATPase ABCA3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 Proteins" /db_xref="GeneID:106085149" CDS 102..5054 /gene="LOC106085149" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X3" /protein_id="XP_059222346.1" /db_xref="GeneID:106085149" /translation="MRNLLKSALNKDRYQMSIMEFVKPVKYNLLYSPNNPFIRNIACE AAQKLDLQCIEKNDAAALEFAMISDNHLVGVQFDDDFYNLDEYPTKLAYSLRYPSELR TWTSNLALTWLTMKLFLPLDLTGPRNPSAQDGGLPVGYLRESFLPVQNAISMAYTKLV SNRTDLPLVDMQRFPYPEYIYDPLLEGMASFVPLIVLLSFIYPCSNIVRYITAEKEKQ LKEVMKIMGLDNWIHWTAWFCKNFIMLAVSAILITIIMKIRWSHDVAVFTFADWSALL FFMLVYMITSICFCFMMATFFSKASTAAAVTGLVWFIAYMPYSFMYQTYDELSLGTKM GWCLISNTAMGLGLNIIMLFEGTGEGLQWSNLFTPVNIDDDLTVGYVIIMMLASCVIY ILVCLYVEQIFPGDYGVPRKWNFIFSRKFWCGENDYIGVEDMPQEHIERRNPDAFEPE PAGKHIGLQVRNLKKRFGDKHAVKGLSVNMYEGEITVLLGHNGAGKTTTISMLTGMFP PTSGTAILNGSDIRTNIEGARMSLGLCPQHNVLFDDLTVADHLIFFSRLKGLKGDAIT QEVNKYIRMIELEDKANVASSKLSGGMKRKLSVCCALTGNTKVVMCDEPSSGMDPSAR RQLWDLLQAEKAGRTVLLTTHFMDEADVLGDRIAIMCDGELKCHGTSFFLKKKYGSGY KLICVKRDGCKAEELTALLRKYVPNIQPEADIGAELSYQLPDTYSHLFEEMFSDLERE SDNLKLNGYGVGITSLEEVFMKVGAEDSNANGDTHKETSARMNGANAYHEDDAESVTS DRLFSENVHLLKGVNLLRNQWDAMMWKKILQTWRSKFLFLIQNIMPIFFVVMTVIIAR TQGTFKPLQPMTVSLTQYPVGVSVLETAPDVAGNSFMAAVSSQYKVVAQSYGSDYELE LTGSKSFSEYIVELGRKIQVRINSRYLAAASIRSNNITAWLNNQPLHTAPLTVNLVHN AIVKAAMNESYEIEVTNAPLPYSTETVLNQLNTGNNLGTQLSTNLCFCFCFVSAFYIL FPIKERESRSKLLQFVSGVNIWIFWITQFLWDMLTFTLTAIIVVCTIACFQEEGFSAF GDLARYFLVIFIFGFSVLPFTYLISMFFSEPSTGFGRVSIINIFCGMALFIVVAVMSI DFLGTKSTADLLGWIFRIFPHFSLAMGLNKLYVNVATRDACSNKMIVILPDALRCQLV PKCCYTIPYFDWEEPGILPEIVYLVGTAIAFLTILILREYGILNELIYKWKQRNFKPT PPAPDAYYDDDVEKEKNRILNMTPTDLSIWNLVLDRVTKYYDKFLAVNEISLCVKPVE CFGLLGVNGAGKTTTFKMMTGDERITSGNAYVKGMNLAADVNSVYKEIGYCPQFDALL DDLTGRETMRIFCLLRGVRRDRISNISEELAKSFGFMKHFDKETKAYSGGNKRKLSTA LAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIILTSHSMEECEALCTRL AIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRSTDIIKSSNGRTLRIGSNSALPHVM EQDIQNVRTFIETEFPRAELQENYQGILTFYIPLSSIKWSQIFGLMESNRDQLNIEDY SISQTTLEEIFLDFAKYQREDTRQVTNNSWCSCCNKQAEE" polyA_site 6064 /gene="LOC106085149" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gttggtacga gccctggtgg tggcagaaga aaagccgatt accgaatatc aaccgcagac 61 tcttgaaaat attaatttgt ttagtagtac cagccagcag aatgcgtaat ttactaaaat 121 ctgccttgaa caaagacagg tatcaaatgt ccattatgga atttgtaaag cccgtcaagt 181 acaatcttct ctattcaccg aacaatccgt tcataagaaa tatcgcctgt gaggctgcac 241 aaaaattaga tttacagtgc atagaaaaaa atgatgcagc cgccttggaa ttcgctatga 301 tctctgacaa tcatttggtc ggtgtacaat ttgacgatga cttctacaat ctggatgagt 361 atcccacaaa actagcatac tctttgcgtt accccagtga gctgagaaca tggacttcga 421 atcttgcctt aacatggttg acaatgaagc tatttttacc cctggatttg acggggccac 481 gtaacccctc ggctcaggat ggtggtttgc cggtgggtta tttacgcgaa agttttctac 541 ccgttcagaa tgcaatttcc atggcctata caaaactagt atcaaatcgc actgacttgc 601 ccctggtgga tatgcaacgt tttccctatc cagaatacat ttacgatcca ctgctagagg 661 gtatggcaag ttttgtgccc ctaattgttt tgttaagttt catctatccc tgctcgaata 721 tagtgcggta catcactgcc gaaaaggaga aacaattgaa ggaagttatg aaaatcatgg 781 gtttggacaa ttggatacat tggactgcat ggttttgtaa aaacttcatc atgttggcgg 841 tttcggctat tctaatcacc ataattatga agattcgatg gtcgcacgat gttgctgttt 901 tcacatttgc cgattggtca gccttgctct ttttcatgtt ggtctatatg ataaccagca 961 tttgtttctg tttcatgatg gccactttct tctcgaaggc cagcactgcg gccgctgtta 1021 ccggcttggt atggttcatt gcatacatgc cctactcctt catgtaccaa acctatgatg 1081 aattgagttt gggcaccaaa atgggttggt gtctcatatc gaacaccgcc atgggtcttg 1141 gtctaaatat tatcatgttg ttcgagggca cgggagaggg attgcagtgg agtaatcttt 1201 ttacccccgt gaatatagac gatgatctga ctgtgggcta tgtcatcatc atgatgttag 1261 catcatgcgt catatacatc ttggtgtgtc tgtatgtaga gcaaatattc cccggcgatt 1321 atggtgtgcc acgcaaatgg aatttcatat tcagtcgcaa attttggtgc ggtgaaaatg 1381 attatatagg tgtcgaagat atgccccaag agcatataga gcgtcgcaac cccgatgcat 1441 ttgaaccaga gccagccggc aaacacatcg gtctgcaagt gagaaaccta aagaaacgtt 1501 ttggtgacaa acatgctgtg aagggtctat cggtcaatat gtatgaaggc gaaataacag 1561 tgctgctggg gcacaatggt gccggcaaga ctaccaccat atccatgctg acgggtatgt 1621 tccctcccac atccggtacg gctatactca atggcagcga cattcgcaca aatatcgaag 1681 gtgcccgcat gtctttgggt ctttgtccgc aacacaatgt tctattcgat gatttgaccg 1741 tggccgatca cttgatcttc ttcagtcgtc tgaaaggtct caagggtgat gccataacgc 1801 aagaggttaa caagtacata cgaatgatcg aattggagga taaagccaat gtggcctcaa 1861 gcaaactatc gggtggtatg aagagaaaac tatcggtctg ttgtgctctc accggaaata 1921 ccaaggtggt aatgtgtgat gaacccagct ctggcatgga tccctcggct cgtcgtcaat 1981 tgtgggattt attgcaagct gagaaggctg gacgcaccgt gctattgacc acacatttca 2041 tggatgaagc tgatgtcttg ggtgatcgta ttgccattat gtgtgatggt gaattgaaat 2101 gtcatggcac ttcgttcttt ttgaagaaaa aatatggatc tggatacaaa ttgatctgtg 2161 tcaaacgtga tggctgcaag gccgaagaac tgacagctct tttgcggaaa tatgtgccca 2221 atatacaacc tgaagctgat atcggcgccg agttgagcta tcagttaccc gatacctatt 2281 cacatctgtt tgaggaaatg tttagtgact tggaacgcga atcggataat ttgaaactca 2341 atggctatgg tgtgggcata acatctctgg aagaggtctt tatgaaagta ggtgctgaag 2401 attccaatgc aaatggtgat acccataaag agaccagtgc acgaatgaat ggggccaatg 2461 cctatcatga agatgatgcc gaatctgtga catctgatcg cttattctcc gaaaatgtcc 2521 acttactgaa aggtgtcaat ctacttcgaa atcaatggga cgccatgatg tggaagaaaa 2581 ttttgcagac atggcgcagc aaattcctct ttttgataca aaatataatg cccatatttt 2641 tcgttgttat gaccgtcata atcgcaagaa cacagggtac attcaagcca ttgcagccga 2701 tgacagtgag tttgactcag tatcccgtgg gcgttagcgt tttagaaacg gctcctgatg 2761 tagctggcaa ttcctttatg gctgctgtct caagtcaata taaagtggtt gctcagtcat 2821 atgggagtga ttatgaattg gaattaactg gctcgaagag ttttagcgag tacatagtgg 2881 aattgggccg caaaatacaa gtgagaataa attcaagata tttggcagcg gcatctataa 2941 gatcgaacaa catcacagcc tggctgaata atcagccctt acatacggct ccattaacgg 3001 tgaacctggt gcataatgcc atcgtcaagg ctgccatgaa tgagtcctat gaaattgagg 3061 ttacaaatgc cccattaccc tattccacag agacggtatt gaatcaattg aataccggca 3121 ataatctggg tacacagtta tcgacgaatt tatgtttctg cttctgtttc gtgagtgctt 3181 tttacatttt gttcccaatc aaagagcgtg aatctcgttc gaaacttttg caatttgtga 3241 gtggcgtcaa tatatggatc ttttggataa cacaattcct gtgggacatg ctgaccttta 3301 cactgaccgc aattatagtg gtctgtacga tagcatgttt ccaggaggag ggattttcgg 3361 cctttggcga tttggctcgc tatttccttg ttatatttat atttggattt tcggtgcttc 3421 catttacata tctgatttca atgttcttct cggagccttc aactggattt ggcagagttt 3481 ccattatcaa tatattctgt ggtatggccc tattcattgt cgttgctgtc atgtccattg 3541 atttcctggg tacaaaatcc accgccgatc ttttgggttg gatctttaga atattccctc 3601 atttctctct ggccatgggt ctcaataagc tatatgtcaa tgtggcaaca cgtgatgcct 3661 gcagcaataa aatgattgta atattgcccg atgctctcag atgtcaattg gtaccaaaat 3721 gttgttacac tataccctat ttcgattggg aagagcctgg cattttaccc gaaattgtat 3781 atttagttgg cactgctatt gcattcttga ccattttgat tttacgcgaa tatggcattt 3841 taaatgaatt gatttataaa tggaaacaaa gaaatttcaa acccacacca cctgctccag 3901 atgcctatta cgatgatgac gttgagaagg agaaaaatcg cattttgaat atgaccccca 3961 cggatttgag catttggaat ttggttttag atcgcgttac caagtattat gataaatttt 4021 tggctgttaa tgaaatatcg ctgtgtgtta aacctgtcga atgctttggc cttttgggtg 4081 tcaatggtgc cggtaagacg accaccttta aaatgatgac tggtgatgag cgtattacca 4141 gcggcaatgc ctatgtcaag ggcatgaatc ttgcggccga tgtcaacagt gtttacaaag 4201 aaatcggcta ttgtccacaa ttcgatgcat tgcttgatga tttgacgggc cgtgaaacta 4261 tgcgcatttt ctgtctgcta cgtggtgtga gacgtgatcg tataagtaac atatccgaag 4321 aattggccaa atcatttggt tttatgaaac atttcgacaa ggagaccaaa gcctatagtg 4381 gtggcaacaa acgtaaattg agtacagctt tggctgtcat aggcagtcca tcggttatat 4441 atttggatga acctaccacg ggtatggatc ctgccgcccg tcgccaacta tggaatatgg 4501 tgtgtcgcat tcgagattcg ggaaaatcca taattttaac ctcacatagt atggaagagt 4561 gtgaagcgtt gtgcacacgt ctggccatta tggtcaatgg tgaattcaag tgtataggtt 4621 ccacacagca tttaaagaat aaattctcca agggtctcat tttgaagatc aaagtgaggc 4681 gtagtacgga tatcataaag tcgagcaacg gccgcacctt aagaataggt agcaactctg 4741 ctttgccaca tgtaatggaa caggatatcc aaaatgttag aacatttatt gaaaccgaat 4801 tcccaagagc cgaattacaa gaaaactacc aaggtattct taccttctac attccattgt 4861 ccagtattaa atggtctcaa atctttggcc ttatggaaag taatcgagac caattgaata 4921 tcgaagatta ttcgatatca cagacgacat tagaagagat tttcttagat tttgccaaat 4981 atcagcgaga agacacccga caagtcacca acaactcatg gtgttcctgc tgcaataaac 5041 aagctgaaga atgattctgg aatgcaaaga accgcctgat aggtctgtgg aagggaggag 5101 atccccccca agcctatgcc ctataaatgt atacgtgata atagataaca gaagtgatcc 5161 acaaagaatg tcagtacaat caatagaaaa acaaaaataa aacggaaccg tgatctatac 5221 taccaaaaga atgtataaaa aaaatagaaa catacattga atgctaaaat taaattgtat 5281 ataaataagt aattatatag taatatataa caaatacgaa tgcctaaact attattacat 5341 ttatatatta tataaaaaaa tctacaatct tcatatatac atgcatatgc tatgtatgta 5401 tctcaacaat gccactacga aaatcatata aacaaatgta tttttataaa tgtgtatttt 5461 ttttaggaaa aaactcatat atgtaattat attcatagtt tttgatgttt ttttcctcct 5521 acttttgttg atacatttta agtattgggg cttttcagag gcagatttta gtattacgaa 5581 agtgctttaa attcttaaag aatgattgga aatgaaaaaa aaaatatcta aatgttccta 5641 agttattgta gtgtagtgaa aagagagaga tgcttaatca actttagctg gaaattggta 5701 aattttattc ataaatttta gacgcctcgt actcagctcg cattgacacc acataaatta 5761 caaaaataaa atgattacga atttttcaat ctcctccaaa aaaggagatt tctatgtact 5821 tatgttaagg aatttaaatt tttgtatgtg tcaattgttt ttatacatgt atttggtgga 5881 tgtgatgaca tctcaatttt ttttttacct catccttata tttttttatg aatttttaca 5941 tgactattag ccagtgattt agtatacatg aaatattatg gaattagtta cattttaagt 6001 tttaaaaatt gaattttatt gtgaataaaa taaaaataaa tattataatt aaccaccact 6061 aaaa