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LOCUS XM_059366362 6995 bp mRNA linear INV 02-SEP-2023 ABCA3 (LOC106085149), transcript variant X4, mRNA. ACCESSION XM_059366362 VERSION XM_059366362.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6995 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6995 /gene="LOC106085149" /note="phospholipid-transporting ATPase ABCA3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69 Proteins" /db_xref="GeneID:106085149" CDS 859..5985 /gene="LOC106085149" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X2" /protein_id="XP_059222345.1" /db_xref="GeneID:106085149" /translation="MAHVGSWEKFKLLTWKNWLLQWHHKIQFAIEIFVPVIFSLLMVL VRALVVAEEKPITEYQPQTLENINLFRYQMSIMEFVKPVKYNLLYSPNNPFIRNIACE AAQKLDLQCIEKNDAAALEFAMISDNHLVGVQFDDDFYNLDEYPTKLAYSLRYPSELR TWTSNLALTWLTMKLFLPLDLTGPRNPSAQDGGLPVGYLRESFLPVQNAISMAYTKLV SNRTDLPLVDMQRFPYPEYIYDPLLEGMASFVPLIVLLSFIYPCSNIVRYITAEKEKQ LKEVMKIMGLDNWIHWTAWFCKNFIMLAVSAILITIIMKIRWSHDVAVFTFADWSALL FFMLVYMITSICFCFMMATFFSKASTAAAVTGLVWFIAYMPYSFMYQTYDELSLGTKM GWCLISNTAMGLGLNIIMLFEGTGEGLQWSNLFTPVNIDDDLTVGYVIIMMLASCVIY ILVCLYVEQIFPGDYGVPRKWNFIFSRKFWCGENDYIGVEDMPQEHIERRNPDAFEPE PAGKHIGLQVRNLKKRFGDKHAVKGLSVNMYEGEITVLLGHNGAGKTTTISMLTGMFP PTSGTAILNGSDIRTNIEGARMSLGLCPQHNVLFDDLTVADHLIFFSRLKGLKGDAIT QEVNKYIRMIELEDKANVASSKLSGGMKRKLSVCCALTGNTKVVMCDEPSSGMDPSAR RQLWDLLQAEKAGRTVLLTTHFMDEADVLGDRIAIMCDGELKCHGTSFFLKKKYGSGY KLICVKRDGCKAEELTALLRKYVPNIQPEADIGAELSYQLPDTYSHLFEEMFSDLERE SDNLKLNGYGVGITSLEEVFMKVGAEDSNANGDTHKETSARMNGANAYHEDDAESVTS DRLFSENVHLLKGVNLLRNQWDAMMWKKILQTWRSKFLFLIQNIMPIFFVVMTVIIAR TQGTFKPLQPMTVSLTQYPVGVSVLETAPDVAGNSFMAAVSSQYKVVAQSYGSDYELE LTGSKSFSEYIVELGRKIQVRINSRYLAAASIRSNNITAWLNNQPLHTAPLTVNLVHN AIVKAAMNESYEIEVTNAPLPYSTETVLNQLNTGNNLGTQLSTNLCFCFCFVSAFYIL FPIKERESRSKLLQFVSGVNIWIFWITQFLWDMLTFTLTAIIVVCTIACFQEEGFSAF GDLARYFLVIFIFGFSVLPFTYLISMFFSEPSTGFGRVSIINIFCGMALFIVVAVMSI DFLGTKSTADLLGWIFRIFPHFSLAMGLNKLYVNVATRDACSNKMIVILPDALRCQLV PKCCYTIPYFDWEEPGILPEIVYLVGTAIAFLTILILREYGILNELIYKWKQRNFKPT PPAPDAYYDDDVEKEKNRILNMTPTDLSIWNLVLDRVTKYYDKFLAVNEISLCVKPVE CFGLLGVNGAGKTTTFKMMTGDERITSGNAYVKGMNLAADVNSVYKEIGYCPQFDALL DDLTGRETMRIFCLLRGVRRDRISNISEELAKSFGFMKHFDKETKAYSGGNKRKLSTA LAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIILTSHSMEECEALCTRL AIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRSTDIIKSSNGRTLRIGSNSALPHVM EQDIQNVRTFIETEFPRAELQENYQGILTFYIPLSSIKWSQIFGLMESNRDQLNIEDY SISQTTLEEIFLDFAKYQREDTRQVTNNSWCSCCNKQAEE" polyA_site 6995 /gene="LOC106085149" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aacatttgta acgataacaa caagaggcgg ttactttgtg tttttttgtg gtctactgtg 61 taaataagtt ttttgtccga caaaaacatt tgaaataaag agaagattgt gccaatgtaa 121 taaaataatt tggaattttt gattttgagt taggaggcag gtggcagctg gtttcattcc 181 tttgttactg ccgtttgatg ggcattaatg aaagaggtgt gatttcttct aaggcaaata 241 atttaatatt ctaacatcta ggagtgaata gcttatacct aattatgaat gaatatatat 301 gcatatactg ttgaagtgtt cctatgtcta ttaattcaaa gtttggtgaa tgtgggcaaa 361 ataaaaattg caaataaact aattttagtg atgaaaaaca ataaccaaag ataaaaaatt 421 cagcggcacg gaagtcatta aagcgtaaaa ctgtaaatac taaaaactat attttgtaat 481 ttgcactgtg tttaaattgg atggcaattt tgtgatgaaa taacgtaaat tccccctata 541 tataaaacag tgattcattt tgtgtaagcg cagcttttgt cagcattttc tttggccggc 601 acaaagattc aacaaaatac cttggaggtc ttgggactaa aataccatat acacatctac 661 atcaataaga aaaccttatg caactacaaa catcatattt ttatatgttc caaacgattt 721 ccacataggc catctcaaat ctaacaaaac aacttaaata tctctacatt aaatgtctca 781 aaacataaat attttataaa aaataataat tacgattata agaaacaaaa atagaaaaag 841 aaaaatattt tatggaaaat ggcacacgtg ggcagttggg aaaaattcaa attgttgaca 901 tggaaaaatt ggcttctaca atggcatcac aaaattcaat ttgcaataga aatatttgtg 961 ccagtgatct tctcactgtt aatggtgttg gtacgagccc tggtggtggc agaagaaaag 1021 ccgattaccg aatatcaacc gcagactctt gaaaatatta atttgtttag gtatcaaatg 1081 tccattatgg aatttgtaaa gcccgtcaag tacaatcttc tctattcacc gaacaatccg 1141 ttcataagaa atatcgcctg tgaggctgca caaaaattag atttacagtg catagaaaaa 1201 aatgatgcag ccgccttgga attcgctatg atctctgaca atcatttggt cggtgtacaa 1261 tttgacgatg acttctacaa tctggatgag tatcccacaa aactagcata ctctttgcgt 1321 taccccagtg agctgagaac atggacttcg aatcttgcct taacatggtt gacaatgaag 1381 ctatttttac ccctggattt gacggggcca cgtaacccct cggctcagga tggtggtttg 1441 ccggtgggtt atttacgcga aagttttcta cccgttcaga atgcaatttc catggcctat 1501 acaaaactag tatcaaatcg cactgacttg cccctggtgg atatgcaacg ttttccctat 1561 ccagaataca tttacgatcc actgctagag ggtatggcaa gttttgtgcc cctaattgtt 1621 ttgttaagtt tcatctatcc ctgctcgaat atagtgcggt acatcactgc cgaaaaggag 1681 aaacaattga aggaagttat gaaaatcatg ggtttggaca attggataca ttggactgca 1741 tggttttgta aaaacttcat catgttggcg gtttcggcta ttctaatcac cataattatg 1801 aagattcgat ggtcgcacga tgttgctgtt ttcacatttg ccgattggtc agccttgctc 1861 tttttcatgt tggtctatat gataaccagc atttgtttct gtttcatgat ggccactttc 1921 ttctcgaagg ccagcactgc ggccgctgtt accggcttgg tatggttcat tgcatacatg 1981 ccctactcct tcatgtacca aacctatgat gaattgagtt tgggcaccaa aatgggttgg 2041 tgtctcatat cgaacaccgc catgggtctt ggtctaaata ttatcatgtt gttcgagggc 2101 acgggagagg gattgcagtg gagtaatctt tttacccccg tgaatataga cgatgatctg 2161 actgtgggct atgtcatcat catgatgtta gcatcatgcg tcatatacat cttggtgtgt 2221 ctgtatgtag agcaaatatt ccccggcgat tatggtgtgc cacgcaaatg gaatttcata 2281 ttcagtcgca aattttggtg cggtgaaaat gattatatag gtgtcgaaga tatgccccaa 2341 gagcatatag agcgtcgcaa ccccgatgca tttgaaccag agccagccgg caaacacatc 2401 ggtctgcaag tgagaaacct aaagaaacgt tttggtgaca aacatgctgt gaagggtcta 2461 tcggtcaata tgtatgaagg cgaaataaca gtgctgctgg ggcacaatgg tgccggcaag 2521 actaccacca tatccatgct gacgggtatg ttccctccca catccggtac ggctatactc 2581 aatggcagcg acattcgcac aaatatcgaa ggtgcccgca tgtctttggg tctttgtccg 2641 caacacaatg ttctattcga tgatttgacc gtggccgatc acttgatctt cttcagtcgt 2701 ctgaaaggtc tcaagggtga tgccataacg caagaggtta acaagtacat acgaatgatc 2761 gaattggagg ataaagccaa tgtggcctca agcaaactat cgggtggtat gaagagaaaa 2821 ctatcggtct gttgtgctct caccggaaat accaaggtgg taatgtgtga tgaacccagc 2881 tctggcatgg atccctcggc tcgtcgtcaa ttgtgggatt tattgcaagc tgagaaggct 2941 ggacgcaccg tgctattgac cacacatttc atggatgaag ctgatgtctt gggtgatcgt 3001 attgccatta tgtgtgatgg tgaattgaaa tgtcatggca cttcgttctt tttgaagaaa 3061 aaatatggat ctggatacaa attgatctgt gtcaaacgtg atggctgcaa ggccgaagaa 3121 ctgacagctc ttttgcggaa atatgtgccc aatatacaac ctgaagctga tatcggcgcc 3181 gagttgagct atcagttacc cgatacctat tcacatctgt ttgaggaaat gtttagtgac 3241 ttggaacgcg aatcggataa tttgaaactc aatggctatg gtgtgggcat aacatctctg 3301 gaagaggtct ttatgaaagt aggtgctgaa gattccaatg caaatggtga tacccataaa 3361 gagaccagtg cacgaatgaa tggggccaat gcctatcatg aagatgatgc cgaatctgtg 3421 acatctgatc gcttattctc cgaaaatgtc cacttactga aaggtgtcaa tctacttcga 3481 aatcaatggg acgccatgat gtggaagaaa attttgcaga catggcgcag caaattcctc 3541 tttttgatac aaaatataat gcccatattt ttcgttgtta tgaccgtcat aatcgcaaga 3601 acacagggta cattcaagcc attgcagccg atgacagtga gtttgactca gtatcccgtg 3661 ggcgttagcg ttttagaaac ggctcctgat gtagctggca attcctttat ggctgctgtc 3721 tcaagtcaat ataaagtggt tgctcagtca tatgggagtg attatgaatt ggaattaact 3781 ggctcgaaga gttttagcga gtacatagtg gaattgggcc gcaaaataca agtgagaata 3841 aattcaagat atttggcagc ggcatctata agatcgaaca acatcacagc ctggctgaat 3901 aatcagccct tacatacggc tccattaacg gtgaacctgg tgcataatgc catcgtcaag 3961 gctgccatga atgagtccta tgaaattgag gttacaaatg ccccattacc ctattccaca 4021 gagacggtat tgaatcaatt gaataccggc aataatctgg gtacacagtt atcgacgaat 4081 ttatgtttct gcttctgttt cgtgagtgct ttttacattt tgttcccaat caaagagcgt 4141 gaatctcgtt cgaaactttt gcaatttgtg agtggcgtca atatatggat cttttggata 4201 acacaattcc tgtgggacat gctgaccttt acactgaccg caattatagt ggtctgtacg 4261 atagcatgtt tccaggagga gggattttcg gcctttggcg atttggctcg ctatttcctt 4321 gttatattta tatttggatt ttcggtgctt ccatttacat atctgatttc aatgttcttc 4381 tcggagcctt caactggatt tggcagagtt tccattatca atatattctg tggtatggcc 4441 ctattcattg tcgttgctgt catgtccatt gatttcctgg gtacaaaatc caccgccgat 4501 cttttgggtt ggatctttag aatattccct catttctctc tggccatggg tctcaataag 4561 ctatatgtca atgtggcaac acgtgatgcc tgcagcaata aaatgattgt aatattgccc 4621 gatgctctca gatgtcaatt ggtaccaaaa tgttgttaca ctatacccta tttcgattgg 4681 gaagagcctg gcattttacc cgaaattgta tatttagttg gcactgctat tgcattcttg 4741 accattttga ttttacgcga atatggcatt ttaaatgaat tgatttataa atggaaacaa 4801 agaaatttca aacccacacc acctgctcca gatgcctatt acgatgatga cgttgagaag 4861 gagaaaaatc gcattttgaa tatgaccccc acggatttga gcatttggaa tttggtttta 4921 gatcgcgtta ccaagtatta tgataaattt ttggctgtta atgaaatatc gctgtgtgtt 4981 aaacctgtcg aatgctttgg ccttttgggt gtcaatggtg ccggtaagac gaccaccttt 5041 aaaatgatga ctggtgatga gcgtattacc agcggcaatg cctatgtcaa gggcatgaat 5101 cttgcggccg atgtcaacag tgtttacaaa gaaatcggct attgtccaca attcgatgca 5161 ttgcttgatg atttgacggg ccgtgaaact atgcgcattt tctgtctgct acgtggtgtg 5221 agacgtgatc gtataagtaa catatccgaa gaattggcca aatcatttgg ttttatgaaa 5281 catttcgaca aggagaccaa agcctatagt ggtggcaaca aacgtaaatt gagtacagct 5341 ttggctgtca taggcagtcc atcggttata tatttggatg aacctaccac gggtatggat 5401 cctgccgccc gtcgccaact atggaatatg gtgtgtcgca ttcgagattc gggaaaatcc 5461 ataattttaa cctcacatag tatggaagag tgtgaagcgt tgtgcacacg tctggccatt 5521 atggtcaatg gtgaattcaa gtgtataggt tccacacagc atttaaagaa taaattctcc 5581 aagggtctca ttttgaagat caaagtgagg cgtagtacgg atatcataaa gtcgagcaac 5641 ggccgcacct taagaatagg tagcaactct gctttgccac atgtaatgga acaggatatc 5701 caaaatgtta gaacatttat tgaaaccgaa ttcccaagag ccgaattaca agaaaactac 5761 caaggtattc ttaccttcta cattccattg tccagtatta aatggtctca aatctttggc 5821 cttatggaaa gtaatcgaga ccaattgaat atcgaagatt attcgatatc acagacgaca 5881 ttagaagaga ttttcttaga ttttgccaaa tatcagcgag aagacacccg acaagtcacc 5941 aacaactcat ggtgttcctg ctgcaataaa caagctgaag aatgattctg gaatgcaaag 6001 aaccgcctga taggtctgtg gaagggagga gatccccccc aagcctatgc cctataaatg 6061 tatacgtgat aatagataac agaagtgatc cacaaagaat gtcagtacaa tcaatagaaa 6121 aacaaaaata aaacggaacc gtgatctata ctaccaaaag aatgtataaa aaaaatagaa 6181 acatacattg aatgctaaaa ttaaattgta tataaataag taattatata gtaatatata 6241 acaaatacga atgcctaaac tattattaca tttatatatt atataaaaaa atctacaatc 6301 ttcatatata catgcatatg ctatgtatgt atctcaacaa tgccactacg aaaatcatat 6361 aaacaaatgt atttttataa atgtgtattt tttttaggaa aaaactcata tatgtaatta 6421 tattcatagt ttttgatgtt tttttcctcc tacttttgtt gatacatttt aagtattggg 6481 gcttttcaga ggcagatttt agtattacga aagtgcttta aattcttaaa gaatgattgg 6541 aaatgaaaaa aaaaatatct aaatgttcct aagttattgt agtgtagtga aaagagagag 6601 atgcttaatc aactttagct ggaaattggt aaattttatt cataaatttt agacgcctcg 6661 tactcagctc gcattgacac cacataaatt acaaaaataa aatgattacg aatttttcaa 6721 tctcctccaa aaaaggagat ttctatgtac ttatgttaag gaatttaaat ttttgtatgt 6781 gtcaattgtt tttatacatg tatttggtgg atgtgatgac atctcaattt tttttttacc 6841 tcatccttat atttttttat gaatttttac atgactatta gccagtgatt tagtatacat 6901 gaaatattat ggaattagtt acattttaag ttttaaaaat tgaattttat tgtgaataaa 6961 ataaaaataa atattataat taaccaccac taaaa