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LOCUS XM_059366361 6818 bp mRNA linear INV 02-SEP-2023 ABCA3 (LOC106085149), transcript variant X3, mRNA. ACCESSION XM_059366361 VERSION XM_059366361.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6818 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6818 /gene="LOC106085149" /note="phospholipid-transporting ATPase ABCA3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 68 Proteins" /db_xref="GeneID:106085149" CDS 619..5808 /gene="LOC106085149" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X1" /protein_id="XP_059222344.1" /db_xref="GeneID:106085149" /translation="MAHVGSWEKFKLLTWKNWLLQWHHKIQFAIEIFVPVIFSLLMVL VRALVVAEEKPITEYQPQTLENINLFRKTVVPASRMRNLLKSALNKDRYQMSIMEFVK PVKYNLLYSPNNPFIRNIACEAAQKLDLQCIEKNDAAALEFAMISDNHLVGVQFDDDF YNLDEYPTKLAYSLRYPSELRTWTSNLALTWLTMKLFLPLDLTGPRNPSAQDGGLPVG YLRESFLPVQNAISMAYTKLVSNRTDLPLVDMQRFPYPEYIYDPLLEGMASFVPLIVL LSFIYPCSNIVRYITAEKEKQLKEVMKIMGLDNWIHWTAWFCKNFIMLAVSAILITII MKIRWSHDVAVFTFADWSALLFFMLVYMITSICFCFMMATFFSKASTAAAVTGLVWFI AYMPYSFMYQTYDELSLGTKMGWCLISNTAMGLGLNIIMLFEGTGEGLQWSNLFTPVN IDDDLTVGYVIIMMLASCVIYILVCLYVEQIFPGDYGVPRKWNFIFSRKFWCGENDYI GVEDMPQEHIERRNPDAFEPEPAGKHIGLQVRNLKKRFGDKHAVKGLSVNMYEGEITV LLGHNGAGKTTTISMLTGMFPPTSGTAILNGSDIRTNIEGARMSLGLCPQHNVLFDDL TVADHLIFFSRLKGLKGDAITQEVNKYIRMIELEDKANVASSKLSGGMKRKLSVCCAL TGNTKVVMCDEPSSGMDPSARRQLWDLLQAEKAGRTVLLTTHFMDEADVLGDRIAIMC DGELKCHGTSFFLKKKYGSGYKLICVKRDGCKAEELTALLRKYVPNIQPEADIGAELS YQLPDTYSHLFEEMFSDLERESDNLKLNGYGVGITSLEEVFMKVGAEDSNANGDTHKE TSARMNGANAYHEDDAESVTSDRLFSENVHLLKGVNLLRNQWDAMMWKKILQTWRSKF LFLIQNIMPIFFVVMTVIIARTQGTFKPLQPMTVSLTQYPVGVSVLETAPDVAGNSFM AAVSSQYKVVAQSYGSDYELELTGSKSFSEYIVELGRKIQVRINSRYLAAASIRSNNI TAWLNNQPLHTAPLTVNLVHNAIVKAAMNESYEIEVTNAPLPYSTETVLNQLNTGNNL GTQLSTNLCFCFCFVSAFYILFPIKERESRSKLLQFVSGVNIWIFWITQFLWDMLTFT LTAIIVVCTIACFQEEGFSAFGDLARYFLVIFIFGFSVLPFTYLISMFFSEPSTGFGR VSIINIFCGMALFIVVAVMSIDFLGTKSTADLLGWIFRIFPHFSLAMGLNKLYVNVAT RDACSNKMIVILPDALRCQLVPKCCYTIPYFDWEEPGILPEIVYLVGTAIAFLTILIL REYGILNELIYKWKQRNFKPTPPAPDAYYDDDVEKEKNRILNMTPTDLSIWNLVLDRV TKYYDKFLAVNEISLCVKPVECFGLLGVNGAGKTTTFKMMTGDERITSGNAYVKGMNL AADVNSVYKEIGYCPQFDALLDDLTGRETMRIFCLLRGVRRDRISNISEELAKSFGFM KHFDKETKAYSGGNKRKLSTALAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDS GKSIILTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRSTDI IKSSNGRTLRIGSNSALPHVMEQDIQNVRTFIETEFPRAELQENYQGILTFYIPLSSI KWSQIFGLMESNRDQLNIEDYSISQTTLEEIFLDFAKYQREDTRQVTNNSWCSCCNKQ AEE" polyA_site 6818 /gene="LOC106085149" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atttgaattc ttttggtaac ggtcgattga aacggaaaac ggcataggaa acaaaaacca 61 tcggcgttaa tttgataaca gcaaagcgtt ggaaattcat tttcgcgttc aaggcccttt 121 caggagttgc caccgctcta tctaagaaag gaacggaaag gcaaataaat tatccttccc 181 aaaaaaaaat tcccacactg ccaaaaaatc tgtttgtgaa attaagtttt gttgaataat 241 aatagaaatt atatatcacc aaaaaagtgt agcaacaaaa agagaaaatc aaacccccca 301 gtggtcagtc cttttactac aatttaccca atcagccctc gaaaataagg cttgattgaa 361 tacaaataaa tatatttggt gttgttttgt ggtagctgct cttcaatata cataataata 421 atacaatcaa caaagactct aattgttggc cttaaatgtt gtacaagttc caaacgattt 481 ccacataggc catctcaaat ctaacaaaac aacttaaata tctctacatt aaatgtctca 541 aaacataaat attttataaa aaataataat tacgattata agaaacaaaa atagaaaaag 601 aaaaatattt tatggaaaat ggcacacgtg ggcagttggg aaaaattcaa attgttgaca 661 tggaaaaatt ggcttctaca atggcatcac aaaattcaat ttgcaataga aatatttgtg 721 ccagtgatct tctcactgtt aatggtgttg gtacgagccc tggtggtggc agaagaaaag 781 ccgattaccg aatatcaacc gcagactctt gaaaatatta atttgtttag gaaaacagta 841 gtaccagcca gcagaatgcg taatttacta aaatctgcct tgaacaaaga caggtatcaa 901 atgtccatta tggaatttgt aaagcccgtc aagtacaatc ttctctattc accgaacaat 961 ccgttcataa gaaatatcgc ctgtgaggct gcacaaaaat tagatttaca gtgcatagaa 1021 aaaaatgatg cagccgcctt ggaattcgct atgatctctg acaatcattt ggtcggtgta 1081 caatttgacg atgacttcta caatctggat gagtatccca caaaactagc atactctttg 1141 cgttacccca gtgagctgag aacatggact tcgaatcttg ccttaacatg gttgacaatg 1201 aagctatttt tacccctgga tttgacgggg ccacgtaacc cctcggctca ggatggtggt 1261 ttgccggtgg gttatttacg cgaaagtttt ctacccgttc agaatgcaat ttccatggcc 1321 tatacaaaac tagtatcaaa tcgcactgac ttgcccctgg tggatatgca acgttttccc 1381 tatccagaat acatttacga tccactgcta gagggtatgg caagttttgt gcccctaatt 1441 gttttgttaa gtttcatcta tccctgctcg aatatagtgc ggtacatcac tgccgaaaag 1501 gagaaacaat tgaaggaagt tatgaaaatc atgggtttgg acaattggat acattggact 1561 gcatggtttt gtaaaaactt catcatgttg gcggtttcgg ctattctaat caccataatt 1621 atgaagattc gatggtcgca cgatgttgct gttttcacat ttgccgattg gtcagccttg 1681 ctctttttca tgttggtcta tatgataacc agcatttgtt tctgtttcat gatggccact 1741 ttcttctcga aggccagcac tgcggccgct gttaccggct tggtatggtt cattgcatac 1801 atgccctact ccttcatgta ccaaacctat gatgaattga gtttgggcac caaaatgggt 1861 tggtgtctca tatcgaacac cgccatgggt cttggtctaa atattatcat gttgttcgag 1921 ggcacgggag agggattgca gtggagtaat ctttttaccc ccgtgaatat agacgatgat 1981 ctgactgtgg gctatgtcat catcatgatg ttagcatcat gcgtcatata catcttggtg 2041 tgtctgtatg tagagcaaat attccccggc gattatggtg tgccacgcaa atggaatttc 2101 atattcagtc gcaaattttg gtgcggtgaa aatgattata taggtgtcga agatatgccc 2161 caagagcata tagagcgtcg caaccccgat gcatttgaac cagagccagc cggcaaacac 2221 atcggtctgc aagtgagaaa cctaaagaaa cgttttggtg acaaacatgc tgtgaagggt 2281 ctatcggtca atatgtatga aggcgaaata acagtgctgc tggggcacaa tggtgccggc 2341 aagactacca ccatatccat gctgacgggt atgttccctc ccacatccgg tacggctata 2401 ctcaatggca gcgacattcg cacaaatatc gaaggtgccc gcatgtcttt gggtctttgt 2461 ccgcaacaca atgttctatt cgatgatttg accgtggccg atcacttgat cttcttcagt 2521 cgtctgaaag gtctcaaggg tgatgccata acgcaagagg ttaacaagta catacgaatg 2581 atcgaattgg aggataaagc caatgtggcc tcaagcaaac tatcgggtgg tatgaagaga 2641 aaactatcgg tctgttgtgc tctcaccgga aataccaagg tggtaatgtg tgatgaaccc 2701 agctctggca tggatccctc ggctcgtcgt caattgtggg atttattgca agctgagaag 2761 gctggacgca ccgtgctatt gaccacacat ttcatggatg aagctgatgt cttgggtgat 2821 cgtattgcca ttatgtgtga tggtgaattg aaatgtcatg gcacttcgtt ctttttgaag 2881 aaaaaatatg gatctggata caaattgatc tgtgtcaaac gtgatggctg caaggccgaa 2941 gaactgacag ctcttttgcg gaaatatgtg cccaatatac aacctgaagc tgatatcggc 3001 gccgagttga gctatcagtt acccgatacc tattcacatc tgtttgagga aatgtttagt 3061 gacttggaac gcgaatcgga taatttgaaa ctcaatggct atggtgtggg cataacatct 3121 ctggaagagg tctttatgaa agtaggtgct gaagattcca atgcaaatgg tgatacccat 3181 aaagagacca gtgcacgaat gaatggggcc aatgcctatc atgaagatga tgccgaatct 3241 gtgacatctg atcgcttatt ctccgaaaat gtccacttac tgaaaggtgt caatctactt 3301 cgaaatcaat gggacgccat gatgtggaag aaaattttgc agacatggcg cagcaaattc 3361 ctctttttga tacaaaatat aatgcccata tttttcgttg ttatgaccgt cataatcgca 3421 agaacacagg gtacattcaa gccattgcag ccgatgacag tgagtttgac tcagtatccc 3481 gtgggcgtta gcgttttaga aacggctcct gatgtagctg gcaattcctt tatggctgct 3541 gtctcaagtc aatataaagt ggttgctcag tcatatggga gtgattatga attggaatta 3601 actggctcga agagttttag cgagtacata gtggaattgg gccgcaaaat acaagtgaga 3661 ataaattcaa gatatttggc agcggcatct ataagatcga acaacatcac agcctggctg 3721 aataatcagc ccttacatac ggctccatta acggtgaacc tggtgcataa tgccatcgtc 3781 aaggctgcca tgaatgagtc ctatgaaatt gaggttacaa atgccccatt accctattcc 3841 acagagacgg tattgaatca attgaatacc ggcaataatc tgggtacaca gttatcgacg 3901 aatttatgtt tctgcttctg tttcgtgagt gctttttaca ttttgttccc aatcaaagag 3961 cgtgaatctc gttcgaaact tttgcaattt gtgagtggcg tcaatatatg gatcttttgg 4021 ataacacaat tcctgtggga catgctgacc tttacactga ccgcaattat agtggtctgt 4081 acgatagcat gtttccagga ggagggattt tcggcctttg gcgatttggc tcgctatttc 4141 cttgttatat ttatatttgg attttcggtg cttccattta catatctgat ttcaatgttc 4201 ttctcggagc cttcaactgg atttggcaga gtttccatta tcaatatatt ctgtggtatg 4261 gccctattca ttgtcgttgc tgtcatgtcc attgatttcc tgggtacaaa atccaccgcc 4321 gatcttttgg gttggatctt tagaatattc cctcatttct ctctggccat gggtctcaat 4381 aagctatatg tcaatgtggc aacacgtgat gcctgcagca ataaaatgat tgtaatattg 4441 cccgatgctc tcagatgtca attggtacca aaatgttgtt acactatacc ctatttcgat 4501 tgggaagagc ctggcatttt acccgaaatt gtatatttag ttggcactgc tattgcattc 4561 ttgaccattt tgattttacg cgaatatggc attttaaatg aattgattta taaatggaaa 4621 caaagaaatt tcaaacccac accacctgct ccagatgcct attacgatga tgacgttgag 4681 aaggagaaaa atcgcatttt gaatatgacc cccacggatt tgagcatttg gaatttggtt 4741 ttagatcgcg ttaccaagta ttatgataaa tttttggctg ttaatgaaat atcgctgtgt 4801 gttaaacctg tcgaatgctt tggccttttg ggtgtcaatg gtgccggtaa gacgaccacc 4861 tttaaaatga tgactggtga tgagcgtatt accagcggca atgcctatgt caagggcatg 4921 aatcttgcgg ccgatgtcaa cagtgtttac aaagaaatcg gctattgtcc acaattcgat 4981 gcattgcttg atgatttgac gggccgtgaa actatgcgca ttttctgtct gctacgtggt 5041 gtgagacgtg atcgtataag taacatatcc gaagaattgg ccaaatcatt tggttttatg 5101 aaacatttcg acaaggagac caaagcctat agtggtggca acaaacgtaa attgagtaca 5161 gctttggctg tcataggcag tccatcggtt atatatttgg atgaacctac cacgggtatg 5221 gatcctgccg cccgtcgcca actatggaat atggtgtgtc gcattcgaga ttcgggaaaa 5281 tccataattt taacctcaca tagtatggaa gagtgtgaag cgttgtgcac acgtctggcc 5341 attatggtca atggtgaatt caagtgtata ggttccacac agcatttaaa gaataaattc 5401 tccaagggtc tcattttgaa gatcaaagtg aggcgtagta cggatatcat aaagtcgagc 5461 aacggccgca ccttaagaat aggtagcaac tctgctttgc cacatgtaat ggaacaggat 5521 atccaaaatg ttagaacatt tattgaaacc gaattcccaa gagccgaatt acaagaaaac 5581 taccaaggta ttcttacctt ctacattcca ttgtccagta ttaaatggtc tcaaatcttt 5641 ggccttatgg aaagtaatcg agaccaattg aatatcgaag attattcgat atcacagacg 5701 acattagaag agattttctt agattttgcc aaatatcagc gagaagacac ccgacaagtc 5761 accaacaact catggtgttc ctgctgcaat aaacaagctg aagaatgatt ctggaatgca 5821 aagaaccgcc tgataggtct gtggaaggga ggagatcccc cccaagccta tgccctataa 5881 atgtatacgt gataatagat aacagaagtg atccacaaag aatgtcagta caatcaatag 5941 aaaaacaaaa ataaaacgga accgtgatct atactaccaa aagaatgtat aaaaaaaata 6001 gaaacataca ttgaatgcta aaattaaatt gtatataaat aagtaattat atagtaatat 6061 ataacaaata cgaatgccta aactattatt acatttatat attatataaa aaaatctaca 6121 atcttcatat atacatgcat atgctatgta tgtatctcaa caatgccact acgaaaatca 6181 tataaacaaa tgtattttta taaatgtgta ttttttttag gaaaaaactc atatatgtaa 6241 ttatattcat agtttttgat gtttttttcc tcctactttt gttgatacat tttaagtatt 6301 ggggcttttc agaggcagat tttagtatta cgaaagtgct ttaaattctt aaagaatgat 6361 tggaaatgaa aaaaaaaata tctaaatgtt cctaagttat tgtagtgtag tgaaaagaga 6421 gagatgctta atcaacttta gctggaaatt ggtaaatttt attcataaat tttagacgcc 6481 tcgtactcag ctcgcattga caccacataa attacaaaaa taaaatgatt acgaattttt 6541 caatctcctc caaaaaagga gatttctatg tacttatgtt aaggaattta aatttttgta 6601 tgtgtcaatt gtttttatac atgtatttgg tggatgtgat gacatctcaa tttttttttt 6661 acctcatcct tatatttttt tatgaatttt tacatgacta ttagccagtg atttagtata 6721 catgaaatat tatggaatta gttacatttt aagttttaaa aattgaattt tattgtgaat 6781 aaaataaaaa taaatattat aattaaccac cactaaaa