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LOCUS XM_059366360 6724 bp mRNA linear INV 02-SEP-2023 ABCA3 (LOC106085149), transcript variant X2, mRNA. ACCESSION XM_059366360 VERSION XM_059366360.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6724 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6724 /gene="LOC106085149" /note="phospholipid-transporting ATPase ABCA3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 68 Proteins" /db_xref="GeneID:106085149" CDS 525..5714 /gene="LOC106085149" /codon_start=1 /product="phospholipid-transporting ATPase ABCA3 isoform X1" /protein_id="XP_059222343.1" /db_xref="GeneID:106085149" /translation="MAHVGSWEKFKLLTWKNWLLQWHHKIQFAIEIFVPVIFSLLMVL VRALVVAEEKPITEYQPQTLENINLFRKTVVPASRMRNLLKSALNKDRYQMSIMEFVK PVKYNLLYSPNNPFIRNIACEAAQKLDLQCIEKNDAAALEFAMISDNHLVGVQFDDDF YNLDEYPTKLAYSLRYPSELRTWTSNLALTWLTMKLFLPLDLTGPRNPSAQDGGLPVG YLRESFLPVQNAISMAYTKLVSNRTDLPLVDMQRFPYPEYIYDPLLEGMASFVPLIVL LSFIYPCSNIVRYITAEKEKQLKEVMKIMGLDNWIHWTAWFCKNFIMLAVSAILITII MKIRWSHDVAVFTFADWSALLFFMLVYMITSICFCFMMATFFSKASTAAAVTGLVWFI AYMPYSFMYQTYDELSLGTKMGWCLISNTAMGLGLNIIMLFEGTGEGLQWSNLFTPVN IDDDLTVGYVIIMMLASCVIYILVCLYVEQIFPGDYGVPRKWNFIFSRKFWCGENDYI GVEDMPQEHIERRNPDAFEPEPAGKHIGLQVRNLKKRFGDKHAVKGLSVNMYEGEITV LLGHNGAGKTTTISMLTGMFPPTSGTAILNGSDIRTNIEGARMSLGLCPQHNVLFDDL TVADHLIFFSRLKGLKGDAITQEVNKYIRMIELEDKANVASSKLSGGMKRKLSVCCAL TGNTKVVMCDEPSSGMDPSARRQLWDLLQAEKAGRTVLLTTHFMDEADVLGDRIAIMC DGELKCHGTSFFLKKKYGSGYKLICVKRDGCKAEELTALLRKYVPNIQPEADIGAELS YQLPDTYSHLFEEMFSDLERESDNLKLNGYGVGITSLEEVFMKVGAEDSNANGDTHKE TSARMNGANAYHEDDAESVTSDRLFSENVHLLKGVNLLRNQWDAMMWKKILQTWRSKF LFLIQNIMPIFFVVMTVIIARTQGTFKPLQPMTVSLTQYPVGVSVLETAPDVAGNSFM AAVSSQYKVVAQSYGSDYELELTGSKSFSEYIVELGRKIQVRINSRYLAAASIRSNNI TAWLNNQPLHTAPLTVNLVHNAIVKAAMNESYEIEVTNAPLPYSTETVLNQLNTGNNL GTQLSTNLCFCFCFVSAFYILFPIKERESRSKLLQFVSGVNIWIFWITQFLWDMLTFT LTAIIVVCTIACFQEEGFSAFGDLARYFLVIFIFGFSVLPFTYLISMFFSEPSTGFGR VSIINIFCGMALFIVVAVMSIDFLGTKSTADLLGWIFRIFPHFSLAMGLNKLYVNVAT RDACSNKMIVILPDALRCQLVPKCCYTIPYFDWEEPGILPEIVYLVGTAIAFLTILIL REYGILNELIYKWKQRNFKPTPPAPDAYYDDDVEKEKNRILNMTPTDLSIWNLVLDRV TKYYDKFLAVNEISLCVKPVECFGLLGVNGAGKTTTFKMMTGDERITSGNAYVKGMNL AADVNSVYKEIGYCPQFDALLDDLTGRETMRIFCLLRGVRRDRISNISEELAKSFGFM KHFDKETKAYSGGNKRKLSTALAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDS GKSIILTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGLILKIKVRRSTDI IKSSNGRTLRIGSNSALPHVMEQDIQNVRTFIETEFPRAELQENYQGILTFYIPLSSI KWSQIFGLMESNRDQLNIEDYSISQTTLEEIFLDFAKYQREDTRQVTNNSWCSCCNKQ AEE" polyA_site 6724 /gene="LOC106085149" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aacatttgta acgataacaa caagaggcgg ttactttgtg tttttttgtg gtctactgtg 61 taaataagtt ttttgtccga caaaaacatt tgaaataaag agaagattgt gccaatgtaa 121 taaaataatt tggaattttt gattttgagt taggaggcag gtggcagctg gtttcattcc 181 tttgttactg ccgtttgatg ggcattaatg aaagagtgat tcattttgtg taagcgcagc 241 ttttgtcagc attttctttg gccggcacaa agattcaaca aaataccttg gaggtcttgg 301 gactaaaata ccatatacac atctacatca ataagaaaac cttatgcaac tacaaacatc 361 atatttttat atgttccaaa cgatttccac ataggccatc tcaaatctaa caaaacaact 421 taaatatctc tacattaaat gtctcaaaac ataaatattt tataaaaaat aataattacg 481 attataagaa acaaaaatag aaaaagaaaa atattttatg gaaaatggca cacgtgggca 541 gttgggaaaa attcaaattg ttgacatgga aaaattggct tctacaatgg catcacaaaa 601 ttcaatttgc aatagaaata tttgtgccag tgatcttctc actgttaatg gtgttggtac 661 gagccctggt ggtggcagaa gaaaagccga ttaccgaata tcaaccgcag actcttgaaa 721 atattaattt gtttaggaaa acagtagtac cagccagcag aatgcgtaat ttactaaaat 781 ctgccttgaa caaagacagg tatcaaatgt ccattatgga atttgtaaag cccgtcaagt 841 acaatcttct ctattcaccg aacaatccgt tcataagaaa tatcgcctgt gaggctgcac 901 aaaaattaga tttacagtgc atagaaaaaa atgatgcagc cgccttggaa ttcgctatga 961 tctctgacaa tcatttggtc ggtgtacaat ttgacgatga cttctacaat ctggatgagt 1021 atcccacaaa actagcatac tctttgcgtt accccagtga gctgagaaca tggacttcga 1081 atcttgcctt aacatggttg acaatgaagc tatttttacc cctggatttg acggggccac 1141 gtaacccctc ggctcaggat ggtggtttgc cggtgggtta tttacgcgaa agttttctac 1201 ccgttcagaa tgcaatttcc atggcctata caaaactagt atcaaatcgc actgacttgc 1261 ccctggtgga tatgcaacgt tttccctatc cagaatacat ttacgatcca ctgctagagg 1321 gtatggcaag ttttgtgccc ctaattgttt tgttaagttt catctatccc tgctcgaata 1381 tagtgcggta catcactgcc gaaaaggaga aacaattgaa ggaagttatg aaaatcatgg 1441 gtttggacaa ttggatacat tggactgcat ggttttgtaa aaacttcatc atgttggcgg 1501 tttcggctat tctaatcacc ataattatga agattcgatg gtcgcacgat gttgctgttt 1561 tcacatttgc cgattggtca gccttgctct ttttcatgtt ggtctatatg ataaccagca 1621 tttgtttctg tttcatgatg gccactttct tctcgaaggc cagcactgcg gccgctgtta 1681 ccggcttggt atggttcatt gcatacatgc cctactcctt catgtaccaa acctatgatg 1741 aattgagttt gggcaccaaa atgggttggt gtctcatatc gaacaccgcc atgggtcttg 1801 gtctaaatat tatcatgttg ttcgagggca cgggagaggg attgcagtgg agtaatcttt 1861 ttacccccgt gaatatagac gatgatctga ctgtgggcta tgtcatcatc atgatgttag 1921 catcatgcgt catatacatc ttggtgtgtc tgtatgtaga gcaaatattc cccggcgatt 1981 atggtgtgcc acgcaaatgg aatttcatat tcagtcgcaa attttggtgc ggtgaaaatg 2041 attatatagg tgtcgaagat atgccccaag agcatataga gcgtcgcaac cccgatgcat 2101 ttgaaccaga gccagccggc aaacacatcg gtctgcaagt gagaaaccta aagaaacgtt 2161 ttggtgacaa acatgctgtg aagggtctat cggtcaatat gtatgaaggc gaaataacag 2221 tgctgctggg gcacaatggt gccggcaaga ctaccaccat atccatgctg acgggtatgt 2281 tccctcccac atccggtacg gctatactca atggcagcga cattcgcaca aatatcgaag 2341 gtgcccgcat gtctttgggt ctttgtccgc aacacaatgt tctattcgat gatttgaccg 2401 tggccgatca cttgatcttc ttcagtcgtc tgaaaggtct caagggtgat gccataacgc 2461 aagaggttaa caagtacata cgaatgatcg aattggagga taaagccaat gtggcctcaa 2521 gcaaactatc gggtggtatg aagagaaaac tatcggtctg ttgtgctctc accggaaata 2581 ccaaggtggt aatgtgtgat gaacccagct ctggcatgga tccctcggct cgtcgtcaat 2641 tgtgggattt attgcaagct gagaaggctg gacgcaccgt gctattgacc acacatttca 2701 tggatgaagc tgatgtcttg ggtgatcgta ttgccattat gtgtgatggt gaattgaaat 2761 gtcatggcac ttcgttcttt ttgaagaaaa aatatggatc tggatacaaa ttgatctgtg 2821 tcaaacgtga tggctgcaag gccgaagaac tgacagctct tttgcggaaa tatgtgccca 2881 atatacaacc tgaagctgat atcggcgccg agttgagcta tcagttaccc gatacctatt 2941 cacatctgtt tgaggaaatg tttagtgact tggaacgcga atcggataat ttgaaactca 3001 atggctatgg tgtgggcata acatctctgg aagaggtctt tatgaaagta ggtgctgaag 3061 attccaatgc aaatggtgat acccataaag agaccagtgc acgaatgaat ggggccaatg 3121 cctatcatga agatgatgcc gaatctgtga catctgatcg cttattctcc gaaaatgtcc 3181 acttactgaa aggtgtcaat ctacttcgaa atcaatggga cgccatgatg tggaagaaaa 3241 ttttgcagac atggcgcagc aaattcctct ttttgataca aaatataatg cccatatttt 3301 tcgttgttat gaccgtcata atcgcaagaa cacagggtac attcaagcca ttgcagccga 3361 tgacagtgag tttgactcag tatcccgtgg gcgttagcgt tttagaaacg gctcctgatg 3421 tagctggcaa ttcctttatg gctgctgtct caagtcaata taaagtggtt gctcagtcat 3481 atgggagtga ttatgaattg gaattaactg gctcgaagag ttttagcgag tacatagtgg 3541 aattgggccg caaaatacaa gtgagaataa attcaagata tttggcagcg gcatctataa 3601 gatcgaacaa catcacagcc tggctgaata atcagccctt acatacggct ccattaacgg 3661 tgaacctggt gcataatgcc atcgtcaagg ctgccatgaa tgagtcctat gaaattgagg 3721 ttacaaatgc cccattaccc tattccacag agacggtatt gaatcaattg aataccggca 3781 ataatctggg tacacagtta tcgacgaatt tatgtttctg cttctgtttc gtgagtgctt 3841 tttacatttt gttcccaatc aaagagcgtg aatctcgttc gaaacttttg caatttgtga 3901 gtggcgtcaa tatatggatc ttttggataa cacaattcct gtgggacatg ctgaccttta 3961 cactgaccgc aattatagtg gtctgtacga tagcatgttt ccaggaggag ggattttcgg 4021 cctttggcga tttggctcgc tatttccttg ttatatttat atttggattt tcggtgcttc 4081 catttacata tctgatttca atgttcttct cggagccttc aactggattt ggcagagttt 4141 ccattatcaa tatattctgt ggtatggccc tattcattgt cgttgctgtc atgtccattg 4201 atttcctggg tacaaaatcc accgccgatc ttttgggttg gatctttaga atattccctc 4261 atttctctct ggccatgggt ctcaataagc tatatgtcaa tgtggcaaca cgtgatgcct 4321 gcagcaataa aatgattgta atattgcccg atgctctcag atgtcaattg gtaccaaaat 4381 gttgttacac tataccctat ttcgattggg aagagcctgg cattttaccc gaaattgtat 4441 atttagttgg cactgctatt gcattcttga ccattttgat tttacgcgaa tatggcattt 4501 taaatgaatt gatttataaa tggaaacaaa gaaatttcaa acccacacca cctgctccag 4561 atgcctatta cgatgatgac gttgagaagg agaaaaatcg cattttgaat atgaccccca 4621 cggatttgag catttggaat ttggttttag atcgcgttac caagtattat gataaatttt 4681 tggctgttaa tgaaatatcg ctgtgtgtta aacctgtcga atgctttggc cttttgggtg 4741 tcaatggtgc cggtaagacg accaccttta aaatgatgac tggtgatgag cgtattacca 4801 gcggcaatgc ctatgtcaag ggcatgaatc ttgcggccga tgtcaacagt gtttacaaag 4861 aaatcggcta ttgtccacaa ttcgatgcat tgcttgatga tttgacgggc cgtgaaacta 4921 tgcgcatttt ctgtctgcta cgtggtgtga gacgtgatcg tataagtaac atatccgaag 4981 aattggccaa atcatttggt tttatgaaac atttcgacaa ggagaccaaa gcctatagtg 5041 gtggcaacaa acgtaaattg agtacagctt tggctgtcat aggcagtcca tcggttatat 5101 atttggatga acctaccacg ggtatggatc ctgccgcccg tcgccaacta tggaatatgg 5161 tgtgtcgcat tcgagattcg ggaaaatcca taattttaac ctcacatagt atggaagagt 5221 gtgaagcgtt gtgcacacgt ctggccatta tggtcaatgg tgaattcaag tgtataggtt 5281 ccacacagca tttaaagaat aaattctcca agggtctcat tttgaagatc aaagtgaggc 5341 gtagtacgga tatcataaag tcgagcaacg gccgcacctt aagaataggt agcaactctg 5401 ctttgccaca tgtaatggaa caggatatcc aaaatgttag aacatttatt gaaaccgaat 5461 tcccaagagc cgaattacaa gaaaactacc aaggtattct taccttctac attccattgt 5521 ccagtattaa atggtctcaa atctttggcc ttatggaaag taatcgagac caattgaata 5581 tcgaagatta ttcgatatca cagacgacat tagaagagat tttcttagat tttgccaaat 5641 atcagcgaga agacacccga caagtcacca acaactcatg gtgttcctgc tgcaataaac 5701 aagctgaaga atgattctgg aatgcaaaga accgcctgat aggtctgtgg aagggaggag 5761 atccccccca agcctatgcc ctataaatgt atacgtgata atagataaca gaagtgatcc 5821 acaaagaatg tcagtacaat caatagaaaa acaaaaataa aacggaaccg tgatctatac 5881 taccaaaaga atgtataaaa aaaatagaaa catacattga atgctaaaat taaattgtat 5941 ataaataagt aattatatag taatatataa caaatacgaa tgcctaaact attattacat 6001 ttatatatta tataaaaaaa tctacaatct tcatatatac atgcatatgc tatgtatgta 6061 tctcaacaat gccactacga aaatcatata aacaaatgta tttttataaa tgtgtatttt 6121 ttttaggaaa aaactcatat atgtaattat attcatagtt tttgatgttt ttttcctcct 6181 acttttgttg atacatttta agtattgggg cttttcagag gcagatttta gtattacgaa 6241 agtgctttaa attcttaaag aatgattgga aatgaaaaaa aaaatatcta aatgttccta 6301 agttattgta gtgtagtgaa aagagagaga tgcttaatca actttagctg gaaattggta 6361 aattttattc ataaatttta gacgcctcgt actcagctcg cattgacacc acataaatta 6421 caaaaataaa atgattacga atttttcaat ctcctccaaa aaaggagatt tctatgtact 6481 tatgttaagg aatttaaatt tttgtatgtg tcaattgttt ttatacatgt atttggtgga 6541 tgtgatgaca tctcaatttt ttttttacct catccttata tttttttatg aatttttaca 6601 tgactattag ccagtgattt agtatacatg aaatattatg gaattagtta cattttaagt 6661 tttaaaaatt gaattttatt gtgaataaaa taaaaataaa tattataatt aaccaccact 6721 aaaa