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LOCUS XM_059366322 9979 bp mRNA linear INV 02-SEP-2023 transcript variant X6, mRNA. ACCESSION XM_059366322 VERSION XM_059366322.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9979 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..9979 /gene="LOC106087570" /note="ELAV-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:106087570" CDS 3009..4073 /gene="LOC106087570" /codon_start=1 /product="ELAV-like protein 3 isoform X4" /protein_id="XP_059222305.1" /db_xref="GeneID:106087570" /translation="MTNAMDIVIKNGSTNGSVDGNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKISVLPASLQALNPALQQGQSLGYGFVNYVRPEDAEKAVNTL NGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEALFAPYGKIITSRILC DNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYTEPITVKFANNPSNSAKAQIPP PLAAYLTPQAAAATRRLTAGALPSAGRIRYSPLAGDLLANSILPGNAITGSGWCIFVY NLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSLNG YTLGNRVLQVSFKTNKTKTA" polyA_site 9979 /gene="LOC106087570" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatcggaaac aaaaacgtaa aacgcaaaaa gtttcgtttc gaaattttcc tttgaacgga 61 atttggatat ttttctccag caaaacccag aggggctgta aattgcatag ccagcaagct 121 ggtgtgcggt gtttaaaaac ggttcctaac aaaaacaaca gtcccaaatt aactgctgac 181 attagaattt ccacaagtga aaggccaagt ccagcattga ggggaaacgg aagcagccgg 241 aaatcagctc taaatttcaa aatctctaca acaaacatat gtcttgttga ttttttaggt 301 tcattctcaa ttttcattct caacaaaaaa ctattgcgat tgtttcgaaa cacacacaca 361 cactcaaaca aatctattca tatatatatg tagatatatt tacgtctaca tacatatgtt 421 catacatgta tgaagattgt cgattgactc tttaatttcg gtgtttaatt tacccaacaa 481 cgcacacaga acgaggcaag aaccattcaa cgaaacttta acgctgaata ggaaaaataa 541 gtagcaaacg agctaagaga tccttttact ggacatctcg cgccccacat tcggcaaagt 601 gttctttaaa gaatctgcgt ccatcaaatg ttccatttaa aagtaaaatt ccacatgatt 661 tgaagcaaaa acacgaaacg gagaaaagaa cgaatttaaa cgcgaattaa ggattggaag 721 cgcgcctaaa ctcaaaaaac aaaaacaatc tgcagtattg atatatacac aagagacaaa 781 ccaaaggaca accaagaagt tttccagaga gaatttcgcc cccccctatg aatcccaaaa 841 gaaaagttgt ggtctgatca taaaaagagt gaatattttt taagaactca acgccggcta 901 tatgcaaaaa aacaaccttc aagaagttgt tcaaaaattt taccacacta agcgacaagc 961 ggcttaaaaa gttgaagaca aaaatctccc cccaaaaagt aaatcaaata taagcaattt 1021 tcataaatgg tgtgtatgca ttttatatag aaaataagtg taagcaaacg attataagtg 1081 aaaaccattt ttttagaaaa aaagaaaaac aaaaacgtaa agaaaactcc ccccaaaata 1141 aaatattgat gttttatata tttacacaaa aatatatatt gagtgtttaa gaattttgag 1201 caaagacttt cataattata attcacccaa aaaagataca gagagaaaga ggattaagcc 1261 ccacaaaaaa gatccacgcc catacactta catacaaaca cacacacaca catgttcaca 1321 caccaagcaa cacctacaaa aaaggacttc caacgatttt agcaaaaaga cgacgaaatt 1381 ttaagttctt ttaaaataaa aaaatttaag acaaaacaaa aagagaacat acttcaacgg 1441 ttaacaaata agaaagacac tttttaaaga aaggccaaat ttttgaactc atcaaccaac 1501 aacaacaaca acaaactata aagtttaaaa ctacttcata agtaaaacga aaaacttaaa 1561 aaaaaagtat attaaaaaaa agcactgcaa taaaaaaggg tttgtgactt taatgataat 1621 ttttttaata taaactgttt ttataacaaa aaaaaataca aaagaaaaca aacattttat 1681 aagaaactga aaaaaaaatc caaaaattta aacaaaaaaa aaaaccattt ttaaaggaaa 1741 gccaacaaac ttaaaacata tatcgttaag acaaagtgat tttttaacca aaaaataaat 1801 aaaaccaaga ttccggagcg aaacgcgatc aaacttcgag ttgttaaaag tttaaatcat 1861 atatcaactg gaaagatctt acaccaagaa aaaagatttg atacaaacta cagaaattta 1921 tacactttga gtaagcaatc gagcagctat taattgtaca ccaagtgaga aaatacaaaa 1981 acccaaaaaa aaaaaaatat tttatattat tccaaaatca agaatattcc aaaacaaaaa 2041 aaaacaacaa acagaaatct tgcaaatcaa caccaccaaa gaaaaccaac tattacagag 2101 ctaacaaaaa caaaaataac gaattgacaa caacaaccac aaaaaaaaaa aacaaaaata 2161 ataatcattt atacacttta atagagactc agaaaaagat ttaagaattt tttgagtata 2221 aatcaaccaa atgttccata ttgaaataca acaacaacaa caagagtaac agcaacaaca 2281 aaaataaatt tataaaattt aagaactcta gtcaaataaa aacagaaaac aacaacaaca 2341 accaaattta cgctaaagaa ctttttgcat ttttgcaatt ttataaaaac cagaagaaaa 2401 cccaacaaca acaacaacaa caaatcaacc aaacagcatt ccaaaacaaa agaaagaaaa 2461 ttcacattca ccaaccaaac taaagaaaaa ataacaaaaa caaaaccaaa atcattagca 2521 aaatttactc ttttaacttt tattattaaa aaatttaaac aattttaaat aaattaccaa 2581 ctcttataaa ttaatgatcc aaacaaagat ctaaaactcc aactccattt aagaaaagta 2641 aagaaatcat aaccgtgaat taaatcggca aaagcagcag cagcagcaac cagaagaaaa 2701 aggactacgc tttttaagaa ggactttctt ataaactgaa cgagaatcac aattccccag 2761 aagaactaaa gcatcactaa caacagcatc aataacaaca acttgtgcta agcacactta 2821 aaaaacacat acacaaacaa aacctaagat atttaacgct gactttaagt aagcgtcaga 2881 gctaaccagc gagcgagcga aagagagagc gagagccagc taatcttcac tttttcatct 2941 acgcgttacc aaagaaatct ttcaaaatta ctctccaaca gcaacaaacc accaccacca 3001 ccaccaagat gaccaatgcc atggacattg ttatcaaaaa tggcagtacc aatgggtctg 3061 tcgatggcaa tgatgaatcg cgcaccaatc tgattgtcaa ctatttgcca cagaccatga 3121 cgcaggagga gatgcgttct ctcttctcca gcattggtga attggaaagt tgcaaattgg 3181 tgcgagataa aatttcagtg ttgccagctt ccctgcaggc cttgaaccca gcattgcaac 3241 aaggtcaaag tttgggctac ggctttgtta actatgtgcg gcccgaagat gccgagaagg 3301 ctgtcaacac cttgaatggt ttgcgtttgc agaataaggt tatcaaagtc tcgtacgccc 3361 gtccaagttc ggagtctatc aagggtgcta atttatatgt atcgggtctt cccaaaaatc 3421 tatcacaacc agacttggag gcgttatttg caccatatgg caaaataata acatctcgta 3481 tactctgtga taatatatcc ggtctctcga aaggtgttgg ttttatacgt ttcgatcagc 3541 gcaacgaagc cgaacgtgca atccaagaac tgaatggcaa aactcctaaa ggttataccg 3601 aaccgattac ggtcaaattt gccaataacc caagcaatag tgctaaagct caaatcccac 3661 caccattggc cgcctatttg acgccacagg cagctgctgc gactagacgt ttgactgctg 3721 gagctttgcc atctgctggc cgtataagat attcccccct ggctggtgat ctattggcaa 3781 attccatatt gccgggcaat gccataactg gttccggttg gtgtatattc gtttacaatt 3841 tggcacccga aacggaagag aatgtcttgt ggcaattgtt tggccccttc ggtgccgtcc 3901 aatcggttaa ggtaatccgc gacctgcaga ccagcaaatg taaaggtttc ggctttgtta 3961 ccatgaccaa ttatgatgaa gcggttgtgg ctatacaatc attgaatggt tatactttag 4021 gtaatcgtgt tttgcaagta agctttaaga ccaataaaac aaaaaccgct taaatagtag 4081 ctcatctgta tgtatgtgca gtgcagcagc tgcaattcta ttgtaagtta gcatttgcaa 4141 atggtcggcc cgagacgact agatttctaa acatactaaa ccgaaaaaaa ctgaaattta 4201 tttaaaagaa aacaaaaaat taaacaatat cagacaatgt actaagagat tttgtggtag 4261 gtggttaaga tgaattgaac ttaaaagagg gaaataggat gggaattttt ttaacacaag 4321 aaaagaagga cttcaaggca atgaatgatt gcatatagat gaaggcatcg tattagactt 4381 taattatgct tcgctggcaa agtaatagta ctgctatggt agtttattct ctacaactac 4441 gagttctcct tctacggtga tctactcctc tagtcgaagt gttcttggag aaattagttt 4501 tatttagatg aaggcattaa gagttctgct actgcggtga tctgttcctc tagtcgaggt 4561 tttctttgac tatccagcag cttatccgct gtatatacat agtaggcagt atgattttgg 4621 atctcatttc ctcttgttga tcagaacgga cttttaaagt ttccatataa ccgggaatat 4681 tctctctgac tgacatctgt tacagatttc ccgaactaac atcagtttct gatgttctga 4741 actgacatct aagagtgtaa ttctgaattc tcctttagct gagattgcct tcggtgggga 4801 ttttaaagtc tttccccttg ctgatgaaaa ctagcatcgt aaatttctat atattagcat 4861 aaattccttc cgaaagacat ctagtatagc aggagtatct ctgattacct ttcgccaata 4921 ataaggaata tcgcatctac tattctgttc gtgaaggtta tgggtattgc tggagataac 4981 gatatatcta ttactggtaa tgttctgaca tatagtggtc tgttccggtt ttcgaaaacg 5041 taaaatgaaa gattttcttt gccttataga ttggaaagtt tgccaaaact atattggaat 5101 gcatagtgta atgaaatttc tttatattag ggaacttcaa gtgatttcaa accataaaag 5161 aataatactt agcaaatatc ggcaaaacat ttactttcgc tttgagaatt cgataatggg 5221 aacaggcctt atactaacct acataacaac ataacgtata cttaaaacaa tgaatttctt 5281 caagatgcga aatttcttct ataatgcctt ctgagattgc tatcaacaat tcattgtttt 5341 taagatttat tatctgtcga tatttttttg ctgatcaaga tcggaaaaat gcttcacgcg 5401 tgtctctcga cttatgccga actcccttac ggtaccggct aaaatcccac catatgtcat 5461 tacgtcagta cgtctcccac ctagctctgt aactatcaag gatagctgct aaaaccccac 5521 catctggcac cctgggggat taattccacc tcggaaacac tttcgcatta cttcgagatg 5581 gaccccatat ctagtgatta tccacatcat cttcgttgtg tctgcgttca gacctctgca 5641 atctacgccg ctgcgtctaa gtccatattc tccctgcgca gtagttcttc ggctaatctg 5701 cgatgagaag attcttctcg ttctccatca ttgctctgaa ctattgtacc agcgaaacct 5761 cgtcaatcct gcatctttcg gctcaacgct ctcaccgcca taattagaaa tacttctatt 5821 gatgacgggt taagatatgc tggagatatg acatatttat aactggtaaa gttctgacat 5881 acagctagca tattcaacat aacgtattct taaaataatg aatatcatgg agaaatggaa 5941 acataatact tctccattga agacttctaa agattgctat caataattca ttgcttttaa 6001 gatttattga agtctagggg tatttttgcg gatcaggatg gggaaaatgc tttacacatg 6061 tgacgagtat atctcccgcc ttatgccgag ctccgtttcc atcaacgtca cccgggggat 6121 taacttcacc tcggaaacac tttctcatta cttcgagatg gaccccatat ctgctagtta 6181 ttcacatcat cattgtcgcg tctgcgtcta gacctccgca ttcattgagt ccaggtccat 6241 tttcttcctg cgcactagtt catcgacgtt cttctcactg cctccccgtt cttcttgttc 6301 tccagcatcc tctggactat tgtgccagat gaaacgtcgc caatcgatgt ttctagttcc 6361 ctgagtcttt cgacccagcg cccacagtgg aagaatatgt gttctacatc gtcagctact 6421 tcgagttcct cataaatgca tttgcccatt ccaagtaggt atatccggaa gtagccatgg 6481 cctgtcaaga tctgtataac gtaatagttc acgtcgcctt actttctatc tcttcacatg 6541 cgtacatcgg tgataaatca ttgcgtccac ttggccagac tctcatttgt acaatctctc 6601 gatagtctcc tcttgtatgt tccgtatatg atccgtttac atctctcttg gtgttgcacc 6661 tctcggtata gagcctggca tgcaacatgg tctgttggtc tatcagaatc attacggcta 6721 ttacaagggt tgcgggctcc gccactgtcc gatgaagtct aggggtagat aagtatatat 6781 aaattaccgt taaagcaagt ggtattgcaa agtataaaat tcttttgggg cggttatgcg 6841 aaagtttaac agttaagtta agttaaggtg tgtttgtgaa gcagtcatta tttgatggaa 6901 tacaagtaat gatttagata atgttatgcc tatttgtagt aaaaccacaa gttatgactt 6961 caacttaaca agtttaatga aatttattcc ctgaaaaacg caataaaatg gtattctaca 7021 tctgccttgc aacacgatcc cttcggaaaa gttcttatca cactctggca acgaagaaag 7081 tcatattttg ctttcggttg cctttttccc ggtaaggttt aataagccac cctccatatg 7141 attcctttgt tatttgtctg atttacactt aaagaaataa atattcgtat agttatgctt 7201 tgatttcccc ctactcaatg catggtgtac aaccaaaact tactagtcaa attttcttta 7261 aattatttat taaaaaaatt tatgtaattt ccaatttttt tgtgaaaaaa tgcacgcatt 7321 acgaaaatat tccaaaacca aaagaaaaac aaaaaaactt tgttatttag aaaagaaaat 7381 taaaacaaat gctctttaga aaaaaaagaa aaaatcagaa cttaaagaaa ttgaacaaca 7441 aacacacaaa atataccata tgtgaaaaac caaataaagt agagttaaaa accgacaaaa 7501 caggaaacca gaaaaaacct ccttcctaga aaaaaagaaa aagtccccat gctgctagta 7561 ctactactaa aacaacaccc acaaaaacta tggtaataat aataattctc taaactatta 7621 acaaagcata gaccatgaaa atctagtaga caacagacaa cagctaaagt ctttaacgaa 7681 tatagaagaa gaaaaaccat aaaacgtaac atcccatcac aagtgaacaa caacataaca 7741 caaaaataaa tgaaatacaa aattctcaac aaccgcgcac attgtgtaga gcaaattaaa 7801 tttattatta ttaattaatt attatatatt attaatataa atatctaaaa atatatatat 7861 ttaatttttg tctttgtcta tgtttatttc aaatctaact cttaacttaa aacacaaaat 7921 ataaaaaaac tcattgaaat aaaaaaccac ataaaactta cttagtaaac ataatttatt 7981 tttaattatt taattatgct cttattctaa ttacatgaaa caacaaaaaa aaaacaaaaa 8041 caaactcaac atcaacaaaa acaaccatac acttaaaaca aaaccaacaa acaaacaaca 8101 acaaaaaata ttattaatta accataaact ttattatatc aatgtttaat tattcttcaa 8161 acaaaaacat aataataacg ataacgataa tgcaaatgac aaaaaactca aaaaatttgt 8221 aataataaaa ttaaaaaaaa aaaaaacaaa aacatacatg aaaacttcaa caattttatt 8281 ataacaaagt gaaatatgaa aaaaaaacca acagcatgag atatggcaaa gcaaaaaaca 8341 gcccagtgaa aacgcagcat gaagaaaaag aagaatgaga aatctcttta acaaaaactc 8401 taaaaaataa acaaaaatat aataataaat atatatttgt atgtgtgtag aattttcttt 8461 tttagccata catatgttta tgtttaaccg tttgattgtc gcattaatta atgaattaat 8521 taattaatta tctacttata ctaatttatt gtcaaattta tataaaacaa ttctttttta 8581 aaaacaaaac caaaccaaaa aaatatccgc aaaaataaaa caacaactct atttattata 8641 tatatgaaac atacatactt atatataaag aaaaacctcg aaaaaaaaaa ccaaaaaaac 8701 ttttaacttt tatttgatta ctttaaatga agaaagaggc taagttggct gggacattgt 8761 atgggggaag actaaaggtt tgaccaaacg atcatcgcag agaatgaaag aacatttttg 8821 gaaatctaaa agactgtcat aacatcaaaa gtaacaaaaa tgaagaaaaa aaaacaaaac 8881 atcaaaaaag aaaattcatc aaagactagt ttggcgctgt agtgttaaag ggagtaataa 8941 taaataaaag aagaagaact ttttcaaaaa tctctaactc ttaacaacga gatcgagagg 9001 gttttttttg cacaaatgaa aagtctttca aaaagcacgt caatatatat tttatgtaat 9061 gttctacatc cgcacccttt tattgggtct caaaatcttg ttagaatctc aataggatat 9121 tgtacagatt tataccatta agtttaatac ttcaaaaagg agatacatcc agaaaagaac 9181 agcaagattg tacaaatctt cttttctgat tacacaatct gcacgattct gcaaaaaaat 9241 taaggtagtt cacttatcca caactattgt ctagtgttta tagtacaaaa gaagcattga 9301 acgtaatggt caaaccaata agttcaattc tgtgttaagg gcaaattgac gaaaaagaga 9361 atgaaagctt aactttgaat tttagaaata gtgaagaagc aaccacttta cgtaatgctg 9421 aaatattggc cgtgttgaat ttctaagcat attataggaa ctttaaaaaa tatctcactc 9481 gcaaattttt gcaaaacaaa taataccagg catttcttct ctaaattaac tcaatgttat 9541 tgtattatta ttacttcctt tgtcaaacta atgatttaaa gaactctaca ctaatactaa 9601 ttcaacatgg cttacttcat tcgacgtata agtaaaatat agattagctt cattagaaaa 9661 gttccataaa ttttctaaat ttgtatatat aagaaacaca tctactgaaa tatattcttg 9721 attattcatg aaatgattaa aaatatccaa ataagagaac gcaaacagac atcttcagaa 9781 acctacaaat ggcttacgcc aaatttgtta aataactaat taccaaatcc aaatccctta 9841 ctaatataag gcattattga aaattcatat agtgtcttat gtatgtattg aacttcaaac 9901 caaaggaata ctccataaga tgagtattgc tttggtctga aatttaattg atagaatacg 9961 aggaaaacga ggaaaacga