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LOCUS XM_059366321 9994 bp mRNA linear INV 02-SEP-2023 transcript variant X5, mRNA. ACCESSION XM_059366321 VERSION XM_059366321.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9994 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..9994 /gene="LOC106087570" /note="ELAV-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins" /db_xref="GeneID:106087570" CDS 3009..4088 /gene="LOC106087570" /codon_start=1 /product="ELAV-like protein 3 isoform X3" /protein_id="XP_059222304.1" /db_xref="GeneID:106087570" /translation="MTNAMDIVIKNGSTNGSVDGNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKISVLPASLQALNPALQQVLPFSGQSLGYGFVNYVRPEDAEK AVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEALFAPYGKIIT SRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYTEPITVKFANNPSNSAK AQIPPPLAAYLTPQAAAATRRLTAGALPSAGRIRYSPLAGDLLANSILPGNAITGSGW CIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAI QSLNGYTLGNRVLQVSFKTNKTKTA" polyA_site 9994 /gene="LOC106087570" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatcggaaac aaaaacgtaa aacgcaaaaa gtttcgtttc gaaattttcc tttgaacgga 61 atttggatat ttttctccag caaaacccag aggggctgta aattgcatag ccagcaagct 121 ggtgtgcggt gtttaaaaac ggttcctaac aaaaacaaca gtcccaaatt aactgctgac 181 attagaattt ccacaagtga aaggccaagt ccagcattga ggggaaacgg aagcagccgg 241 aaatcagctc taaatttcaa aatctctaca acaaacatat gtcttgttga ttttttaggt 301 tcattctcaa ttttcattct caacaaaaaa ctattgcgat tgtttcgaaa cacacacaca 361 cactcaaaca aatctattca tatatatatg tagatatatt tacgtctaca tacatatgtt 421 catacatgta tgaagattgt cgattgactc tttaatttcg gtgtttaatt tacccaacaa 481 cgcacacaga acgaggcaag aaccattcaa cgaaacttta acgctgaata ggaaaaataa 541 gtagcaaacg agctaagaga tccttttact ggacatctcg cgccccacat tcggcaaagt 601 gttctttaaa gaatctgcgt ccatcaaatg ttccatttaa aagtaaaatt ccacatgatt 661 tgaagcaaaa acacgaaacg gagaaaagaa cgaatttaaa cgcgaattaa ggattggaag 721 cgcgcctaaa ctcaaaaaac aaaaacaatc tgcagtattg atatatacac aagagacaaa 781 ccaaaggaca accaagaagt tttccagaga gaatttcgcc cccccctatg aatcccaaaa 841 gaaaagttgt ggtctgatca taaaaagagt gaatattttt taagaactca acgccggcta 901 tatgcaaaaa aacaaccttc aagaagttgt tcaaaaattt taccacacta agcgacaagc 961 ggcttaaaaa gttgaagaca aaaatctccc cccaaaaagt aaatcaaata taagcaattt 1021 tcataaatgg tgtgtatgca ttttatatag aaaataagtg taagcaaacg attataagtg 1081 aaaaccattt ttttagaaaa aaagaaaaac aaaaacgtaa agaaaactcc ccccaaaata 1141 aaatattgat gttttatata tttacacaaa aatatatatt gagtgtttaa gaattttgag 1201 caaagacttt cataattata attcacccaa aaaagataca gagagaaaga ggattaagcc 1261 ccacaaaaaa gatccacgcc catacactta catacaaaca cacacacaca catgttcaca 1321 caccaagcaa cacctacaaa aaaggacttc caacgatttt agcaaaaaga cgacgaaatt 1381 ttaagttctt ttaaaataaa aaaatttaag acaaaacaaa aagagaacat acttcaacgg 1441 ttaacaaata agaaagacac tttttaaaga aaggccaaat ttttgaactc atcaaccaac 1501 aacaacaaca acaaactata aagtttaaaa ctacttcata agtaaaacga aaaacttaaa 1561 aaaaaagtat attaaaaaaa agcactgcaa taaaaaaggg tttgtgactt taatgataat 1621 ttttttaata taaactgttt ttataacaaa aaaaaataca aaagaaaaca aacattttat 1681 aagaaactga aaaaaaaatc caaaaattta aacaaaaaaa aaaaccattt ttaaaggaaa 1741 gccaacaaac ttaaaacata tatcgttaag acaaagtgat tttttaacca aaaaataaat 1801 aaaaccaaga ttccggagcg aaacgcgatc aaacttcgag ttgttaaaag tttaaatcat 1861 atatcaactg gaaagatctt acaccaagaa aaaagatttg atacaaacta cagaaattta 1921 tacactttga gtaagcaatc gagcagctat taattgtaca ccaagtgaga aaatacaaaa 1981 acccaaaaaa aaaaaaatat tttatattat tccaaaatca agaatattcc aaaacaaaaa 2041 aaaacaacaa acagaaatct tgcaaatcaa caccaccaaa gaaaaccaac tattacagag 2101 ctaacaaaaa caaaaataac gaattgacaa caacaaccac aaaaaaaaaa aacaaaaata 2161 ataatcattt atacacttta atagagactc agaaaaagat ttaagaattt tttgagtata 2221 aatcaaccaa atgttccata ttgaaataca acaacaacaa caagagtaac agcaacaaca 2281 aaaataaatt tataaaattt aagaactcta gtcaaataaa aacagaaaac aacaacaaca 2341 accaaattta cgctaaagaa ctttttgcat ttttgcaatt ttataaaaac cagaagaaaa 2401 cccaacaaca acaacaacaa caaatcaacc aaacagcatt ccaaaacaaa agaaagaaaa 2461 ttcacattca ccaaccaaac taaagaaaaa ataacaaaaa caaaaccaaa atcattagca 2521 aaatttactc ttttaacttt tattattaaa aaatttaaac aattttaaat aaattaccaa 2581 ctcttataaa ttaatgatcc aaacaaagat ctaaaactcc aactccattt aagaaaagta 2641 aagaaatcat aaccgtgaat taaatcggca aaagcagcag cagcagcaac cagaagaaaa 2701 aggactacgc tttttaagaa ggactttctt ataaactgaa cgagaatcac aattccccag 2761 aagaactaaa gcatcactaa caacagcatc aataacaaca acttgtgcta agcacactta 2821 aaaaacacat acacaaacaa aacctaagat atttaacgct gactttaagt aagcgtcaga 2881 gctaaccagc gagcgagcga aagagagagc gagagccagc taatcttcac tttttcatct 2941 acgcgttacc aaagaaatct ttcaaaatta ctctccaaca gcaacaaacc accaccacca 3001 ccaccaagat gaccaatgcc atggacattg ttatcaaaaa tggcagtacc aatgggtctg 3061 tcgatggcaa tgatgaatcg cgcaccaatc tgattgtcaa ctatttgcca cagaccatga 3121 cgcaggagga gatgcgttct ctcttctcca gcattggtga attggaaagt tgcaaattgg 3181 tgcgagataa aatttcagtg ttgccagctt ccctgcaggc cttgaaccca gcattgcaac 3241 aagttctgcc tttttcaggt caaagtttgg gctacggctt tgttaactat gtgcggcccg 3301 aagatgccga gaaggctgtc aacaccttga atggtttgcg tttgcagaat aaggttatca 3361 aagtctcgta cgcccgtcca agttcggagt ctatcaaggg tgctaattta tatgtatcgg 3421 gtcttcccaa aaatctatca caaccagact tggaggcgtt atttgcacca tatggcaaaa 3481 taataacatc tcgtatactc tgtgataata tatccggtct ctcgaaaggt gttggtttta 3541 tacgtttcga tcagcgcaac gaagccgaac gtgcaatcca agaactgaat ggcaaaactc 3601 ctaaaggtta taccgaaccg attacggtca aatttgccaa taacccaagc aatagtgcta 3661 aagctcaaat cccaccacca ttggccgcct atttgacgcc acaggcagct gctgcgacta 3721 gacgtttgac tgctggagct ttgccatctg ctggccgtat aagatattcc cccctggctg 3781 gtgatctatt ggcaaattcc atattgccgg gcaatgccat aactggttcc ggttggtgta 3841 tattcgttta caatttggca cccgaaacgg aagagaatgt cttgtggcaa ttgtttggcc 3901 ccttcggtgc cgtccaatcg gttaaggtaa tccgcgacct gcagaccagc aaatgtaaag 3961 gtttcggctt tgttaccatg accaattatg atgaagcggt tgtggctata caatcattga 4021 atggttatac tttaggtaat cgtgttttgc aagtaagctt taagaccaat aaaacaaaaa 4081 ccgcttaaat agtagctcat ctgtatgtat gtgcagtgca gcagctgcaa ttctattgta 4141 agttagcatt tgcaaatggt cggcccgaga cgactagatt tctaaacata ctaaaccgaa 4201 aaaaactgaa atttatttaa aagaaaacaa aaaattaaac aatatcagac aatgtactaa 4261 gagattttgt ggtaggtggt taagatgaat tgaacttaaa agagggaaat aggatgggaa 4321 tttttttaac acaagaaaag aaggacttca aggcaatgaa tgattgcata tagatgaagg 4381 catcgtatta gactttaatt atgcttcgct ggcaaagtaa tagtactgct atggtagttt 4441 attctctaca actacgagtt ctccttctac ggtgatctac tcctctagtc gaagtgttct 4501 tggagaaatt agttttattt agatgaaggc attaagagtt ctgctactgc ggtgatctgt 4561 tcctctagtc gaggttttct ttgactatcc agcagcttat ccgctgtata tacatagtag 4621 gcagtatgat tttggatctc atttcctctt gttgatcaga acggactttt aaagtttcca 4681 tataaccggg aatattctct ctgactgaca tctgttacag atttcccgaa ctaacatcag 4741 tttctgatgt tctgaactga catctaagag tgtaattctg aattctcctt tagctgagat 4801 tgccttcggt ggggatttta aagtctttcc ccttgctgat gaaaactagc atcgtaaatt 4861 tctatatatt agcataaatt ccttccgaaa gacatctagt atagcaggag tatctctgat 4921 tacctttcgc caataataag gaatatcgca tctactattc tgttcgtgaa ggttatgggt 4981 attgctggag ataacgatat atctattact ggtaatgttc tgacatatag tggtctgttc 5041 cggttttcga aaacgtaaaa tgaaagattt tctttgcctt atagattgga aagtttgcca 5101 aaactatatt ggaatgcata gtgtaatgaa atttctttat attagggaac ttcaagtgat 5161 ttcaaaccat aaaagaataa tacttagcaa atatcggcaa aacatttact ttcgctttga 5221 gaattcgata atgggaacag gccttatact aacctacata acaacataac gtatacttaa 5281 aacaatgaat ttcttcaaga tgcgaaattt cttctataat gccttctgag attgctatca 5341 acaattcatt gtttttaaga tttattatct gtcgatattt ttttgctgat caagatcgga 5401 aaaatgcttc acgcgtgtct ctcgacttat gccgaactcc cttacggtac cggctaaaat 5461 cccaccatat gtcattacgt cagtacgtct cccacctagc tctgtaacta tcaaggatag 5521 ctgctaaaac cccaccatct ggcaccctgg gggattaatt ccacctcgga aacactttcg 5581 cattacttcg agatggaccc catatctagt gattatccac atcatcttcg ttgtgtctgc 5641 gttcagacct ctgcaatcta cgccgctgcg tctaagtcca tattctccct gcgcagtagt 5701 tcttcggcta atctgcgatg agaagattct tctcgttctc catcattgct ctgaactatt 5761 gtaccagcga aacctcgtca atcctgcatc tttcggctca acgctctcac cgccataatt 5821 agaaatactt ctattgatga cgggttaaga tatgctggag atatgacata tttataactg 5881 gtaaagttct gacatacagc tagcatattc aacataacgt attcttaaaa taatgaatat 5941 catggagaaa tggaaacata atacttctcc attgaagact tctaaagatt gctatcaata 6001 attcattgct tttaagattt attgaagtct aggggtattt ttgcggatca ggatggggaa 6061 aatgctttac acatgtgacg agtatatctc ccgccttatg ccgagctccg tttccatcaa 6121 cgtcacccgg gggattaact tcacctcgga aacactttct cattacttcg agatggaccc 6181 catatctgct agttattcac atcatcattg tcgcgtctgc gtctagacct ccgcattcat 6241 tgagtccagg tccattttct tcctgcgcac tagttcatcg acgttcttct cactgcctcc 6301 ccgttcttct tgttctccag catcctctgg actattgtgc cagatgaaac gtcgccaatc 6361 gatgtttcta gttccctgag tctttcgacc cagcgcccac agtggaagaa tatgtgttct 6421 acatcgtcag ctacttcgag ttcctcataa atgcatttgc ccattccaag taggtatatc 6481 cggaagtagc catggcctgt caagatctgt ataacgtaat agttcacgtc gccttacttt 6541 ctatctcttc acatgcgtac atcggtgata aatcattgcg tccacttggc cagactctca 6601 tttgtacaat ctctcgatag tctcctcttg tatgttccgt atatgatccg tttacatctc 6661 tcttggtgtt gcacctctcg gtatagagcc tggcatgcaa catggtctgt tggtctatca 6721 gaatcattac ggctattaca agggttgcgg gctccgccac tgtccgatga agtctagggg 6781 tagataagta tatataaatt accgttaaag caagtggtat tgcaaagtat aaaattcttt 6841 tggggcggtt atgcgaaagt ttaacagtta agttaagtta aggtgtgttt gtgaagcagt 6901 cattatttga tggaatacaa gtaatgattt agataatgtt atgcctattt gtagtaaaac 6961 cacaagttat gacttcaact taacaagttt aatgaaattt attccctgaa aaacgcaata 7021 aaatggtatt ctacatctgc cttgcaacac gatcccttcg gaaaagttct tatcacactc 7081 tggcaacgaa gaaagtcata ttttgctttc ggttgccttt ttcccggtaa ggtttaataa 7141 gccaccctcc atatgattcc tttgttattt gtctgattta cacttaaaga aataaatatt 7201 cgtatagtta tgctttgatt tccccctact caatgcatgg tgtacaacca aaacttacta 7261 gtcaaatttt ctttaaatta tttattaaaa aaatttatgt aatttccaat ttttttgtga 7321 aaaaatgcac gcattacgaa aatattccaa aaccaaaaga aaaacaaaaa aactttgtta 7381 tttagaaaag aaaattaaaa caaatgctct ttagaaaaaa aagaaaaaat cagaacttaa 7441 agaaattgaa caacaaacac acaaaatata ccatatgtga aaaaccaaat aaagtagagt 7501 taaaaaccga caaaacagga aaccagaaaa aacctccttc ctagaaaaaa agaaaaagtc 7561 cccatgctgc tagtactact actaaaacaa cacccacaaa aactatggta ataataataa 7621 ttctctaaac tattaacaaa gcatagacca tgaaaatcta gtagacaaca gacaacagct 7681 aaagtcttta acgaatatag aagaagaaaa accataaaac gtaacatccc atcacaagtg 7741 aacaacaaca taacacaaaa ataaatgaaa tacaaaattc tcaacaaccg cgcacattgt 7801 gtagagcaaa ttaaatttat tattattaat taattattat atattattaa tataaatatc 7861 taaaaatata tatatttaat ttttgtcttt gtctatgttt atttcaaatc taactcttaa 7921 cttaaaacac aaaatataaa aaaactcatt gaaataaaaa accacataaa acttacttag 7981 taaacataat ttatttttaa ttatttaatt atgctcttat tctaattaca tgaaacaaca 8041 aaaaaaaaac aaaaacaaac tcaacatcaa caaaaacaac catacactta aaacaaaacc 8101 aacaaacaaa caacaacaaa aaatattatt aattaaccat aaactttatt atatcaatgt 8161 ttaattattc ttcaaacaaa aacataataa taacgataac gataatgcaa atgacaaaaa 8221 actcaaaaaa tttgtaataa taaaattaaa aaaaaaaaaa acaaaaacat acatgaaaac 8281 ttcaacaatt ttattataac aaagtgaaat atgaaaaaaa aaccaacagc atgagatatg 8341 gcaaagcaaa aaacagccca gtgaaaacgc agcatgaaga aaaagaagaa tgagaaatct 8401 ctttaacaaa aactctaaaa aataaacaaa aatataataa taaatatata tttgtatgtg 8461 tgtagaattt tcttttttag ccatacatat gtttatgttt aaccgtttga ttgtcgcatt 8521 aattaatgaa ttaattaatt aattatctac ttatactaat ttattgtcaa atttatataa 8581 aacaattctt ttttaaaaac aaaaccaaac caaaaaaata tccgcaaaaa taaaacaaca 8641 actctattta ttatatatat gaaacataca tacttatata taaagaaaaa cctcgaaaaa 8701 aaaaaccaaa aaaactttta acttttattt gattacttta aatgaagaaa gaggctaagt 8761 tggctgggac attgtatggg ggaagactaa aggtttgacc aaacgatcat cgcagagaat 8821 gaaagaacat ttttggaaat ctaaaagact gtcataacat caaaagtaac aaaaatgaag 8881 aaaaaaaaac aaaacatcaa aaaagaaaat tcatcaaaga ctagtttggc gctgtagtgt 8941 taaagggagt aataataaat aaaagaagaa gaactttttc aaaaatctct aactcttaac 9001 aacgagatcg agagggtttt ttttgcacaa atgaaaagtc tttcaaaaag cacgtcaata 9061 tatattttat gtaatgttct acatccgcac ccttttattg ggtctcaaaa tcttgttaga 9121 atctcaatag gatattgtac agatttatac cattaagttt aatacttcaa aaaggagata 9181 catccagaaa agaacagcaa gattgtacaa atcttctttt ctgattacac aatctgcacg 9241 attctgcaaa aaaattaagg tagttcactt atccacaact attgtctagt gtttatagta 9301 caaaagaagc attgaacgta atggtcaaac caataagttc aattctgtgt taagggcaaa 9361 ttgacgaaaa agagaatgaa agcttaactt tgaattttag aaatagtgaa gaagcaacca 9421 ctttacgtaa tgctgaaata ttggccgtgt tgaatttcta agcatattat aggaacttta 9481 aaaaatatct cactcgcaaa tttttgcaaa acaaataata ccaggcattt cttctctaaa 9541 ttaactcaat gttattgtat tattattact tcctttgtca aactaatgat ttaaagaact 9601 ctacactaat actaattcaa catggcttac ttcattcgac gtataagtaa aatatagatt 9661 agcttcatta gaaaagttcc ataaattttc taaatttgta tatataagaa acacatctac 9721 tgaaatatat tcttgattat tcatgaaatg attaaaaata tccaaataag agaacgcaaa 9781 cagacatctt cagaaaccta caaatggctt acgccaaatt tgttaaataa ctaattacca 9841 aatccaaatc ccttactaat ataaggcatt attgaaaatt catatagtgt cttatgtatg 9901 tattgaactt caaaccaaag gaatactcca taagatgagt attgctttgg tctgaaattt 9961 aattgataga atacgaggaa aacgaggaaa acga