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LOCUS XM_059366320 10024 bp mRNA linear INV 02-SEP-2023 transcript variant X4, mRNA. ACCESSION XM_059366320 VERSION XM_059366320.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10024 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..10024 /gene="LOC106087570" /note="ELAV-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106087570" CDS 3009..4118 /gene="LOC106087570" /codon_start=1 /product="ELAV-like protein 3 isoform X2" /protein_id="XP_059222303.1" /db_xref="GeneID:106087570" /translation="MTNAMDIVIKNGSTNGSVDGNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKISVLPASLQALNPALQQGQSLGYGFVNYVRPEDAEKAVNTL NGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEALFAPYGKIITSRILC DNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYTEPITVKFANNPSNSAKAQIPP PLAAYLTPQAAAATRRLTAGALPSAGRISIGKSPMFAINKGLQRYSPLAGDLLANSIL PGNAITGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTM TNYDEAVVAIQSLNGYTLGNRVLQVSFKTNKTKTA" polyA_site 10024 /gene="LOC106087570" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aatcggaaac aaaaacgtaa aacgcaaaaa gtttcgtttc gaaattttcc tttgaacgga 61 atttggatat ttttctccag caaaacccag aggggctgta aattgcatag ccagcaagct 121 ggtgtgcggt gtttaaaaac ggttcctaac aaaaacaaca gtcccaaatt aactgctgac 181 attagaattt ccacaagtga aaggccaagt ccagcattga ggggaaacgg aagcagccgg 241 aaatcagctc taaatttcaa aatctctaca acaaacatat gtcttgttga ttttttaggt 301 tcattctcaa ttttcattct caacaaaaaa ctattgcgat tgtttcgaaa cacacacaca 361 cactcaaaca aatctattca tatatatatg tagatatatt tacgtctaca tacatatgtt 421 catacatgta tgaagattgt cgattgactc tttaatttcg gtgtttaatt tacccaacaa 481 cgcacacaga acgaggcaag aaccattcaa cgaaacttta acgctgaata ggaaaaataa 541 gtagcaaacg agctaagaga tccttttact ggacatctcg cgccccacat tcggcaaagt 601 gttctttaaa gaatctgcgt ccatcaaatg ttccatttaa aagtaaaatt ccacatgatt 661 tgaagcaaaa acacgaaacg gagaaaagaa cgaatttaaa cgcgaattaa ggattggaag 721 cgcgcctaaa ctcaaaaaac aaaaacaatc tgcagtattg atatatacac aagagacaaa 781 ccaaaggaca accaagaagt tttccagaga gaatttcgcc cccccctatg aatcccaaaa 841 gaaaagttgt ggtctgatca taaaaagagt gaatattttt taagaactca acgccggcta 901 tatgcaaaaa aacaaccttc aagaagttgt tcaaaaattt taccacacta agcgacaagc 961 ggcttaaaaa gttgaagaca aaaatctccc cccaaaaagt aaatcaaata taagcaattt 1021 tcataaatgg tgtgtatgca ttttatatag aaaataagtg taagcaaacg attataagtg 1081 aaaaccattt ttttagaaaa aaagaaaaac aaaaacgtaa agaaaactcc ccccaaaata 1141 aaatattgat gttttatata tttacacaaa aatatatatt gagtgtttaa gaattttgag 1201 caaagacttt cataattata attcacccaa aaaagataca gagagaaaga ggattaagcc 1261 ccacaaaaaa gatccacgcc catacactta catacaaaca cacacacaca catgttcaca 1321 caccaagcaa cacctacaaa aaaggacttc caacgatttt agcaaaaaga cgacgaaatt 1381 ttaagttctt ttaaaataaa aaaatttaag acaaaacaaa aagagaacat acttcaacgg 1441 ttaacaaata agaaagacac tttttaaaga aaggccaaat ttttgaactc atcaaccaac 1501 aacaacaaca acaaactata aagtttaaaa ctacttcata agtaaaacga aaaacttaaa 1561 aaaaaagtat attaaaaaaa agcactgcaa taaaaaaggg tttgtgactt taatgataat 1621 ttttttaata taaactgttt ttataacaaa aaaaaataca aaagaaaaca aacattttat 1681 aagaaactga aaaaaaaatc caaaaattta aacaaaaaaa aaaaccattt ttaaaggaaa 1741 gccaacaaac ttaaaacata tatcgttaag acaaagtgat tttttaacca aaaaataaat 1801 aaaaccaaga ttccggagcg aaacgcgatc aaacttcgag ttgttaaaag tttaaatcat 1861 atatcaactg gaaagatctt acaccaagaa aaaagatttg atacaaacta cagaaattta 1921 tacactttga gtaagcaatc gagcagctat taattgtaca ccaagtgaga aaatacaaaa 1981 acccaaaaaa aaaaaaatat tttatattat tccaaaatca agaatattcc aaaacaaaaa 2041 aaaacaacaa acagaaatct tgcaaatcaa caccaccaaa gaaaaccaac tattacagag 2101 ctaacaaaaa caaaaataac gaattgacaa caacaaccac aaaaaaaaaa aacaaaaata 2161 ataatcattt atacacttta atagagactc agaaaaagat ttaagaattt tttgagtata 2221 aatcaaccaa atgttccata ttgaaataca acaacaacaa caagagtaac agcaacaaca 2281 aaaataaatt tataaaattt aagaactcta gtcaaataaa aacagaaaac aacaacaaca 2341 accaaattta cgctaaagaa ctttttgcat ttttgcaatt ttataaaaac cagaagaaaa 2401 cccaacaaca acaacaacaa caaatcaacc aaacagcatt ccaaaacaaa agaaagaaaa 2461 ttcacattca ccaaccaaac taaagaaaaa ataacaaaaa caaaaccaaa atcattagca 2521 aaatttactc ttttaacttt tattattaaa aaatttaaac aattttaaat aaattaccaa 2581 ctcttataaa ttaatgatcc aaacaaagat ctaaaactcc aactccattt aagaaaagta 2641 aagaaatcat aaccgtgaat taaatcggca aaagcagcag cagcagcaac cagaagaaaa 2701 aggactacgc tttttaagaa ggactttctt ataaactgaa cgagaatcac aattccccag 2761 aagaactaaa gcatcactaa caacagcatc aataacaaca acttgtgcta agcacactta 2821 aaaaacacat acacaaacaa aacctaagat atttaacgct gactttaagt aagcgtcaga 2881 gctaaccagc gagcgagcga aagagagagc gagagccagc taatcttcac tttttcatct 2941 acgcgttacc aaagaaatct ttcaaaatta ctctccaaca gcaacaaacc accaccacca 3001 ccaccaagat gaccaatgcc atggacattg ttatcaaaaa tggcagtacc aatgggtctg 3061 tcgatggcaa tgatgaatcg cgcaccaatc tgattgtcaa ctatttgcca cagaccatga 3121 cgcaggagga gatgcgttct ctcttctcca gcattggtga attggaaagt tgcaaattgg 3181 tgcgagataa aatttcagtg ttgccagctt ccctgcaggc cttgaaccca gcattgcaac 3241 aaggtcaaag tttgggctac ggctttgtta actatgtgcg gcccgaagat gccgagaagg 3301 ctgtcaacac cttgaatggt ttgcgtttgc agaataaggt tatcaaagtc tcgtacgccc 3361 gtccaagttc ggagtctatc aagggtgcta atttatatgt atcgggtctt cccaaaaatc 3421 tatcacaacc agacttggag gcgttatttg caccatatgg caaaataata acatctcgta 3481 tactctgtga taatatatcc ggtctctcga aaggtgttgg ttttatacgt ttcgatcagc 3541 gcaacgaagc cgaacgtgca atccaagaac tgaatggcaa aactcctaaa ggttataccg 3601 aaccgattac ggtcaaattt gccaataacc caagcaatag tgctaaagct caaatcccac 3661 caccattggc cgcctatttg acgccacagg cagctgctgc gactagacgt ttgactgctg 3721 gagctttgcc atctgctggc cgtataagca ttggaaaaag ccccatgttt gccattaaca 3781 agggtctaca aagatattcc cccctggctg gtgatctatt ggcaaattcc atattgccgg 3841 gcaatgccat aactggttcc ggttggtgta tattcgttta caatttggca cccgaaacgg 3901 aagagaatgt cttgtggcaa ttgtttggcc ccttcggtgc cgtccaatcg gttaaggtaa 3961 tccgcgacct gcagaccagc aaatgtaaag gtttcggctt tgttaccatg accaattatg 4021 atgaagcggt tgtggctata caatcattga atggttatac tttaggtaat cgtgttttgc 4081 aagtaagctt taagaccaat aaaacaaaaa ccgcttaaat agtagctcat ctgtatgtat 4141 gtgcagtgca gcagctgcaa ttctattgta agttagcatt tgcaaatggt cggcccgaga 4201 cgactagatt tctaaacata ctaaaccgaa aaaaactgaa atttatttaa aagaaaacaa 4261 aaaattaaac aatatcagac aatgtactaa gagattttgt ggtaggtggt taagatgaat 4321 tgaacttaaa agagggaaat aggatgggaa tttttttaac acaagaaaag aaggacttca 4381 aggcaatgaa tgattgcata tagatgaagg catcgtatta gactttaatt atgcttcgct 4441 ggcaaagtaa tagtactgct atggtagttt attctctaca actacgagtt ctccttctac 4501 ggtgatctac tcctctagtc gaagtgttct tggagaaatt agttttattt agatgaaggc 4561 attaagagtt ctgctactgc ggtgatctgt tcctctagtc gaggttttct ttgactatcc 4621 agcagcttat ccgctgtata tacatagtag gcagtatgat tttggatctc atttcctctt 4681 gttgatcaga acggactttt aaagtttcca tataaccggg aatattctct ctgactgaca 4741 tctgttacag atttcccgaa ctaacatcag tttctgatgt tctgaactga catctaagag 4801 tgtaattctg aattctcctt tagctgagat tgccttcggt ggggatttta aagtctttcc 4861 ccttgctgat gaaaactagc atcgtaaatt tctatatatt agcataaatt ccttccgaaa 4921 gacatctagt atagcaggag tatctctgat tacctttcgc caataataag gaatatcgca 4981 tctactattc tgttcgtgaa ggttatgggt attgctggag ataacgatat atctattact 5041 ggtaatgttc tgacatatag tggtctgttc cggttttcga aaacgtaaaa tgaaagattt 5101 tctttgcctt atagattgga aagtttgcca aaactatatt ggaatgcata gtgtaatgaa 5161 atttctttat attagggaac ttcaagtgat ttcaaaccat aaaagaataa tacttagcaa 5221 atatcggcaa aacatttact ttcgctttga gaattcgata atgggaacag gccttatact 5281 aacctacata acaacataac gtatacttaa aacaatgaat ttcttcaaga tgcgaaattt 5341 cttctataat gccttctgag attgctatca acaattcatt gtttttaaga tttattatct 5401 gtcgatattt ttttgctgat caagatcgga aaaatgcttc acgcgtgtct ctcgacttat 5461 gccgaactcc cttacggtac cggctaaaat cccaccatat gtcattacgt cagtacgtct 5521 cccacctagc tctgtaacta tcaaggatag ctgctaaaac cccaccatct ggcaccctgg 5581 gggattaatt ccacctcgga aacactttcg cattacttcg agatggaccc catatctagt 5641 gattatccac atcatcttcg ttgtgtctgc gttcagacct ctgcaatcta cgccgctgcg 5701 tctaagtcca tattctccct gcgcagtagt tcttcggcta atctgcgatg agaagattct 5761 tctcgttctc catcattgct ctgaactatt gtaccagcga aacctcgtca atcctgcatc 5821 tttcggctca acgctctcac cgccataatt agaaatactt ctattgatga cgggttaaga 5881 tatgctggag atatgacata tttataactg gtaaagttct gacatacagc tagcatattc 5941 aacataacgt attcttaaaa taatgaatat catggagaaa tggaaacata atacttctcc 6001 attgaagact tctaaagatt gctatcaata attcattgct tttaagattt attgaagtct 6061 aggggtattt ttgcggatca ggatggggaa aatgctttac acatgtgacg agtatatctc 6121 ccgccttatg ccgagctccg tttccatcaa cgtcacccgg gggattaact tcacctcgga 6181 aacactttct cattacttcg agatggaccc catatctgct agttattcac atcatcattg 6241 tcgcgtctgc gtctagacct ccgcattcat tgagtccagg tccattttct tcctgcgcac 6301 tagttcatcg acgttcttct cactgcctcc ccgttcttct tgttctccag catcctctgg 6361 actattgtgc cagatgaaac gtcgccaatc gatgtttcta gttccctgag tctttcgacc 6421 cagcgcccac agtggaagaa tatgtgttct acatcgtcag ctacttcgag ttcctcataa 6481 atgcatttgc ccattccaag taggtatatc cggaagtagc catggcctgt caagatctgt 6541 ataacgtaat agttcacgtc gccttacttt ctatctcttc acatgcgtac atcggtgata 6601 aatcattgcg tccacttggc cagactctca tttgtacaat ctctcgatag tctcctcttg 6661 tatgttccgt atatgatccg tttacatctc tcttggtgtt gcacctctcg gtatagagcc 6721 tggcatgcaa catggtctgt tggtctatca gaatcattac ggctattaca agggttgcgg 6781 gctccgccac tgtccgatga agtctagggg tagataagta tatataaatt accgttaaag 6841 caagtggtat tgcaaagtat aaaattcttt tggggcggtt atgcgaaagt ttaacagtta 6901 agttaagtta aggtgtgttt gtgaagcagt cattatttga tggaatacaa gtaatgattt 6961 agataatgtt atgcctattt gtagtaaaac cacaagttat gacttcaact taacaagttt 7021 aatgaaattt attccctgaa aaacgcaata aaatggtatt ctacatctgc cttgcaacac 7081 gatcccttcg gaaaagttct tatcacactc tggcaacgaa gaaagtcata ttttgctttc 7141 ggttgccttt ttcccggtaa ggtttaataa gccaccctcc atatgattcc tttgttattt 7201 gtctgattta cacttaaaga aataaatatt cgtatagtta tgctttgatt tccccctact 7261 caatgcatgg tgtacaacca aaacttacta gtcaaatttt ctttaaatta tttattaaaa 7321 aaatttatgt aatttccaat ttttttgtga aaaaatgcac gcattacgaa aatattccaa 7381 aaccaaaaga aaaacaaaaa aactttgtta tttagaaaag aaaattaaaa caaatgctct 7441 ttagaaaaaa aagaaaaaat cagaacttaa agaaattgaa caacaaacac acaaaatata 7501 ccatatgtga aaaaccaaat aaagtagagt taaaaaccga caaaacagga aaccagaaaa 7561 aacctccttc ctagaaaaaa agaaaaagtc cccatgctgc tagtactact actaaaacaa 7621 cacccacaaa aactatggta ataataataa ttctctaaac tattaacaaa gcatagacca 7681 tgaaaatcta gtagacaaca gacaacagct aaagtcttta acgaatatag aagaagaaaa 7741 accataaaac gtaacatccc atcacaagtg aacaacaaca taacacaaaa ataaatgaaa 7801 tacaaaattc tcaacaaccg cgcacattgt gtagagcaaa ttaaatttat tattattaat 7861 taattattat atattattaa tataaatatc taaaaatata tatatttaat ttttgtcttt 7921 gtctatgttt atttcaaatc taactcttaa cttaaaacac aaaatataaa aaaactcatt 7981 gaaataaaaa accacataaa acttacttag taaacataat ttatttttaa ttatttaatt 8041 atgctcttat tctaattaca tgaaacaaca aaaaaaaaac aaaaacaaac tcaacatcaa 8101 caaaaacaac catacactta aaacaaaacc aacaaacaaa caacaacaaa aaatattatt 8161 aattaaccat aaactttatt atatcaatgt ttaattattc ttcaaacaaa aacataataa 8221 taacgataac gataatgcaa atgacaaaaa actcaaaaaa tttgtaataa taaaattaaa 8281 aaaaaaaaaa acaaaaacat acatgaaaac ttcaacaatt ttattataac aaagtgaaat 8341 atgaaaaaaa aaccaacagc atgagatatg gcaaagcaaa aaacagccca gtgaaaacgc 8401 agcatgaaga aaaagaagaa tgagaaatct ctttaacaaa aactctaaaa aataaacaaa 8461 aatataataa taaatatata tttgtatgtg tgtagaattt tcttttttag ccatacatat 8521 gtttatgttt aaccgtttga ttgtcgcatt aattaatgaa ttaattaatt aattatctac 8581 ttatactaat ttattgtcaa atttatataa aacaattctt ttttaaaaac aaaaccaaac 8641 caaaaaaata tccgcaaaaa taaaacaaca actctattta ttatatatat gaaacataca 8701 tacttatata taaagaaaaa cctcgaaaaa aaaaaccaaa aaaactttta acttttattt 8761 gattacttta aatgaagaaa gaggctaagt tggctgggac attgtatggg ggaagactaa 8821 aggtttgacc aaacgatcat cgcagagaat gaaagaacat ttttggaaat ctaaaagact 8881 gtcataacat caaaagtaac aaaaatgaag aaaaaaaaac aaaacatcaa aaaagaaaat 8941 tcatcaaaga ctagtttggc gctgtagtgt taaagggagt aataataaat aaaagaagaa 9001 gaactttttc aaaaatctct aactcttaac aacgagatcg agagggtttt ttttgcacaa 9061 atgaaaagtc tttcaaaaag cacgtcaata tatattttat gtaatgttct acatccgcac 9121 ccttttattg ggtctcaaaa tcttgttaga atctcaatag gatattgtac agatttatac 9181 cattaagttt aatacttcaa aaaggagata catccagaaa agaacagcaa gattgtacaa 9241 atcttctttt ctgattacac aatctgcacg attctgcaaa aaaattaagg tagttcactt 9301 atccacaact attgtctagt gtttatagta caaaagaagc attgaacgta atggtcaaac 9361 caataagttc aattctgtgt taagggcaaa ttgacgaaaa agagaatgaa agcttaactt 9421 tgaattttag aaatagtgaa gaagcaacca ctttacgtaa tgctgaaata ttggccgtgt 9481 tgaatttcta agcatattat aggaacttta aaaaatatct cactcgcaaa tttttgcaaa 9541 acaaataata ccaggcattt cttctctaaa ttaactcaat gttattgtat tattattact 9601 tcctttgtca aactaatgat ttaaagaact ctacactaat actaattcaa catggcttac 9661 ttcattcgac gtataagtaa aatatagatt agcttcatta gaaaagttcc ataaattttc 9721 taaatttgta tatataagaa acacatctac tgaaatatat tcttgattat tcatgaaatg 9781 attaaaaata tccaaataag agaacgcaaa cagacatctt cagaaaccta caaatggctt 9841 acgccaaatt tgttaaataa ctaattacca aatccaaatc ccttactaat ataaggcatt 9901 attgaaaatt catatagtgt cttatgtatg tattgaactt caaaccaaag gaatactcca 9961 taagatgagt attgctttgg tctgaaattt aattgataga atacgaggaa aacgaggaaa 10021 acga