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LOCUS XM_059366319 9928 bp mRNA linear INV 02-SEP-2023 transcript variant X3, mRNA. ACCESSION XM_059366319 VERSION XM_059366319.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9928 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..9928 /gene="LOC106087570" /note="ELAV-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106087570" CDS 2898..4022 /gene="LOC106087570" /codon_start=1 /product="ELAV-like protein 3 isoform X1" /protein_id="XP_059222302.1" /db_xref="GeneID:106087570" /translation="MTNAMDIVIKNGSTNGSVDGNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKISVLPASLQALNPALQQVLPFSGQSLGYGFVNYVRPEDAEK AVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEALFAPYGKIIT SRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYTEPITVKFANNPSNSAK AQIPPPLAAYLTPQAAAATRRLTAGALPSAGRISIGKSPMFAINKGLQRYSPLAGDLL ANSILPGNAITGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGF GFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNKTKTA" polyA_site 9928 /gene="LOC106087570" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcctccgag tgaactcacc tatggtggtc aacttattcc acctaacata acctatacga 61 tctagagcgt atcgttcagc gctacaagag agaacctcta gttcaagcgg catgggggat 121 atcagtttct ggaaattctg aaaattgcac ctgatctgcg accaagcgtc ccctgtttaa 181 cagcgtagcc agtcccactc gcctctaacc cagatccctc tggatgcacg ccacattagt 241 cgcagagttc ctggatctgg atattcaaca gaatcaagca aacgaataat agaacacaac 301 tcactgctac agcaacaata aggccagatc cttcagcgca gcttgactgt cttcttacac 361 caggcaaata ttcctgcatc ggaatcatct gtaaggcatc gctaaaacaa atttttggaa 421 aacgctactc tcttcgagac ggcaatgtta cctaattcct gggtactcaa tgaagagctc 481 tacacttgtg ttctttaaag aatctgcgtc catcaaatgt tccatttaaa agtaaaattc 541 cacatgattt gaagcaaaaa cacgaaacgg agaaaagaac gaatttaaac gcgaattaag 601 gattggaagc gcgcctaaac tcaaaaaaca aaaacaatct gcagtattga tatatacaca 661 agagacaaac caaaggacaa ccaagaagtt ttccagagag aatttcgccc ccccctatga 721 atcccaaaag aaaagttgtg gtctgatcat aaaaagagtg aatatttttt aagaactcaa 781 cgccggctat atgcaaaaaa acaaccttca agaagttgtt caaaaatttt accacactaa 841 gcgacaagcg gcttaaaaag ttgaagacaa aaatctcccc ccaaaaagta aatcaaatat 901 aagcaatttt cataaatggt gtgtatgcat tttatataga aaataagtgt aagcaaacga 961 ttataagtga aaaccatttt tttagaaaaa aagaaaaaca aaaacgtaaa gaaaactccc 1021 cccaaaataa aatattgatg ttttatatat ttacacaaaa atatatattg agtgtttaag 1081 aattttgagc aaagactttc ataattataa ttcacccaaa aaagatacag agagaaagag 1141 gattaagccc cacaaaaaag atccacgccc atacacttac atacaaacac acacacacac 1201 atgttcacac accaagcaac acctacaaaa aaggacttcc aacgatttta gcaaaaagac 1261 gacgaaattt taagttcttt taaaataaaa aaatttaaga caaaacaaaa agagaacata 1321 cttcaacggt taacaaataa gaaagacact ttttaaagaa aggccaaatt tttgaactca 1381 tcaaccaaca acaacaacaa caaactataa agtttaaaac tacttcataa gtaaaacgaa 1441 aaacttaaaa aaaaagtata ttaaaaaaaa gcactgcaat aaaaaagggt ttgtgacttt 1501 aatgataatt tttttaatat aaactgtttt tataacaaaa aaaaatacaa aagaaaacaa 1561 acattttata agaaactgaa aaaaaaatcc aaaaatttaa acaaaaaaaa aaaccatttt 1621 taaaggaaag ccaacaaact taaaacatat atcgttaaga caaagtgatt ttttaaccaa 1681 aaaataaata aaaccaagat tccggagcga aacgcgatca aacttcgagt tgttaaaagt 1741 ttaaatcata tatcaactgg aaagatctta caccaagaaa aaagatttga tacaaactac 1801 agaaatttat acactttgag taagcaatcg agcagctatt aattgtacac caagtgagaa 1861 aatacaaaaa cccaaaaaaa aaaaaatatt ttatattatt ccaaaatcaa gaatattcca 1921 aaacaaaaaa aaacaacaaa cagaaatctt gcaaatcaac accaccaaag aaaaccaact 1981 attacagagc taacaaaaac aaaaataacg aattgacaac aacaaccaca aaaaaaaaaa 2041 acaaaaataa taatcattta tacactttaa tagagactca gaaaaagatt taagaatttt 2101 ttgagtataa atcaaccaaa tgttccatat tgaaatacaa caacaacaac aagagtaaca 2161 gcaacaacaa aaataaattt ataaaattta agaactctag tcaaataaaa acagaaaaca 2221 acaacaacaa ccaaatttac gctaaagaac tttttgcatt tttgcaattt tataaaaacc 2281 agaagaaaac ccaacaacaa caacaacaac aaatcaacca aacagcattc caaaacaaaa 2341 gaaagaaaat tcacattcac caaccaaact aaagaaaaaa taacaaaaac aaaaccaaaa 2401 tcattagcaa aatttactct tttaactttt attattaaaa aatttaaaca attttaaata 2461 aattaccaac tcttataaat taatgatcca aacaaagatc taaaactcca actccattta 2521 agaaaagtaa agaaatcata accgtgaatt aaatcggcaa aagcagcagc agcagcaacc 2581 agaagaaaaa ggactacgct ttttaagaag gactttctta taaactgaac gagaatcaca 2641 attccccaga agaactaaag catcactaac aacagcatca ataacaacaa cttgtgctaa 2701 gcacacttaa aaaacacata cacaaacaaa acctaagata tttaacgctg actttaagta 2761 agcgtcagag ctaaccagcg agcgagcgaa agagagagcg agagccagct aatcttcact 2821 ttttcatcta cgcgttacca aagaaatctt tcaaaattac tctccaacag caacaaacca 2881 ccaccaccac caccaagatg accaatgcca tggacattgt tatcaaaaat ggcagtacca 2941 atgggtctgt cgatggcaat gatgaatcgc gcaccaatct gattgtcaac tatttgccac 3001 agaccatgac gcaggaggag atgcgttctc tcttctccag cattggtgaa ttggaaagtt 3061 gcaaattggt gcgagataaa atttcagtgt tgccagcttc cctgcaggcc ttgaacccag 3121 cattgcaaca agttctgcct ttttcaggtc aaagtttggg ctacggcttt gttaactatg 3181 tgcggcccga agatgccgag aaggctgtca acaccttgaa tggtttgcgt ttgcagaata 3241 aggttatcaa agtctcgtac gcccgtccaa gttcggagtc tatcaagggt gctaatttat 3301 atgtatcggg tcttcccaaa aatctatcac aaccagactt ggaggcgtta tttgcaccat 3361 atggcaaaat aataacatct cgtatactct gtgataatat atccggtctc tcgaaaggtg 3421 ttggttttat acgtttcgat cagcgcaacg aagccgaacg tgcaatccaa gaactgaatg 3481 gcaaaactcc taaaggttat accgaaccga ttacggtcaa atttgccaat aacccaagca 3541 atagtgctaa agctcaaatc ccaccaccat tggccgccta tttgacgcca caggcagctg 3601 ctgcgactag acgtttgact gctggagctt tgccatctgc tggccgtata agcattggaa 3661 aaagccccat gtttgccatt aacaagggtc tacaaagata ttcccccctg gctggtgatc 3721 tattggcaaa ttccatattg ccgggcaatg ccataactgg ttccggttgg tgtatattcg 3781 tttacaattt ggcacccgaa acggaagaga atgtcttgtg gcaattgttt ggccccttcg 3841 gtgccgtcca atcggttaag gtaatccgcg acctgcagac cagcaaatgt aaaggtttcg 3901 gctttgttac catgaccaat tatgatgaag cggttgtggc tatacaatca ttgaatggtt 3961 atactttagg taatcgtgtt ttgcaagtaa gctttaagac caataaaaca aaaaccgctt 4021 aaatagtagc tcatctgtat gtatgtgcag tgcagcagct gcaattctat tgtaagttag 4081 catttgcaaa tggtcggccc gagacgacta gatttctaaa catactaaac cgaaaaaaac 4141 tgaaatttat ttaaaagaaa acaaaaaatt aaacaatatc agacaatgta ctaagagatt 4201 ttgtggtagg tggttaagat gaattgaact taaaagaggg aaataggatg ggaatttttt 4261 taacacaaga aaagaaggac ttcaaggcaa tgaatgattg catatagatg aaggcatcgt 4321 attagacttt aattatgctt cgctggcaaa gtaatagtac tgctatggta gtttattctc 4381 tacaactacg agttctcctt ctacggtgat ctactcctct agtcgaagtg ttcttggaga 4441 aattagtttt atttagatga aggcattaag agttctgcta ctgcggtgat ctgttcctct 4501 agtcgaggtt ttctttgact atccagcagc ttatccgctg tatatacata gtaggcagta 4561 tgattttgga tctcatttcc tcttgttgat cagaacggac ttttaaagtt tccatataac 4621 cgggaatatt ctctctgact gacatctgtt acagatttcc cgaactaaca tcagtttctg 4681 atgttctgaa ctgacatcta agagtgtaat tctgaattct cctttagctg agattgcctt 4741 cggtggggat tttaaagtct ttccccttgc tgatgaaaac tagcatcgta aatttctata 4801 tattagcata aattccttcc gaaagacatc tagtatagca ggagtatctc tgattacctt 4861 tcgccaataa taaggaatat cgcatctact attctgttcg tgaaggttat gggtattgct 4921 ggagataacg atatatctat tactggtaat gttctgacat atagtggtct gttccggttt 4981 tcgaaaacgt aaaatgaaag attttctttg ccttatagat tggaaagttt gccaaaacta 5041 tattggaatg catagtgtaa tgaaatttct ttatattagg gaacttcaag tgatttcaaa 5101 ccataaaaga ataatactta gcaaatatcg gcaaaacatt tactttcgct ttgagaattc 5161 gataatggga acaggcctta tactaaccta cataacaaca taacgtatac ttaaaacaat 5221 gaatttcttc aagatgcgaa atttcttcta taatgccttc tgagattgct atcaacaatt 5281 cattgttttt aagatttatt atctgtcgat atttttttgc tgatcaagat cggaaaaatg 5341 cttcacgcgt gtctctcgac ttatgccgaa ctcccttacg gtaccggcta aaatcccacc 5401 atatgtcatt acgtcagtac gtctcccacc tagctctgta actatcaagg atagctgcta 5461 aaaccccacc atctggcacc ctgggggatt aattccacct cggaaacact ttcgcattac 5521 ttcgagatgg accccatatc tagtgattat ccacatcatc ttcgttgtgt ctgcgttcag 5581 acctctgcaa tctacgccgc tgcgtctaag tccatattct ccctgcgcag tagttcttcg 5641 gctaatctgc gatgagaaga ttcttctcgt tctccatcat tgctctgaac tattgtacca 5701 gcgaaacctc gtcaatcctg catctttcgg ctcaacgctc tcaccgccat aattagaaat 5761 acttctattg atgacgggtt aagatatgct ggagatatga catatttata actggtaaag 5821 ttctgacata cagctagcat attcaacata acgtattctt aaaataatga atatcatgga 5881 gaaatggaaa cataatactt ctccattgaa gacttctaaa gattgctatc aataattcat 5941 tgcttttaag atttattgaa gtctaggggt atttttgcgg atcaggatgg ggaaaatgct 6001 ttacacatgt gacgagtata tctcccgcct tatgccgagc tccgtttcca tcaacgtcac 6061 ccgggggatt aacttcacct cggaaacact ttctcattac ttcgagatgg accccatatc 6121 tgctagttat tcacatcatc attgtcgcgt ctgcgtctag acctccgcat tcattgagtc 6181 caggtccatt ttcttcctgc gcactagttc atcgacgttc ttctcactgc ctccccgttc 6241 ttcttgttct ccagcatcct ctggactatt gtgccagatg aaacgtcgcc aatcgatgtt 6301 tctagttccc tgagtctttc gacccagcgc ccacagtgga agaatatgtg ttctacatcg 6361 tcagctactt cgagttcctc ataaatgcat ttgcccattc caagtaggta tatccggaag 6421 tagccatggc ctgtcaagat ctgtataacg taatagttca cgtcgcctta ctttctatct 6481 cttcacatgc gtacatcggt gataaatcat tgcgtccact tggccagact ctcatttgta 6541 caatctctcg atagtctcct cttgtatgtt ccgtatatga tccgtttaca tctctcttgg 6601 tgttgcacct ctcggtatag agcctggcat gcaacatggt ctgttggtct atcagaatca 6661 ttacggctat tacaagggtt gcgggctccg ccactgtccg atgaagtcta ggggtagata 6721 agtatatata aattaccgtt aaagcaagtg gtattgcaaa gtataaaatt cttttggggc 6781 ggttatgcga aagtttaaca gttaagttaa gttaaggtgt gtttgtgaag cagtcattat 6841 ttgatggaat acaagtaatg atttagataa tgttatgcct atttgtagta aaaccacaag 6901 ttatgacttc aacttaacaa gtttaatgaa atttattccc tgaaaaacgc aataaaatgg 6961 tattctacat ctgccttgca acacgatccc ttcggaaaag ttcttatcac actctggcaa 7021 cgaagaaagt catattttgc tttcggttgc ctttttcccg gtaaggttta ataagccacc 7081 ctccatatga ttcctttgtt atttgtctga tttacactta aagaaataaa tattcgtata 7141 gttatgcttt gatttccccc tactcaatgc atggtgtaca accaaaactt actagtcaaa 7201 ttttctttaa attatttatt aaaaaaattt atgtaatttc caattttttt gtgaaaaaat 7261 gcacgcatta cgaaaatatt ccaaaaccaa aagaaaaaca aaaaaacttt gttatttaga 7321 aaagaaaatt aaaacaaatg ctctttagaa aaaaaagaaa aaatcagaac ttaaagaaat 7381 tgaacaacaa acacacaaaa tataccatat gtgaaaaacc aaataaagta gagttaaaaa 7441 ccgacaaaac aggaaaccag aaaaaacctc cttcctagaa aaaaagaaaa agtccccatg 7501 ctgctagtac tactactaaa acaacaccca caaaaactat ggtaataata ataattctct 7561 aaactattaa caaagcatag accatgaaaa tctagtagac aacagacaac agctaaagtc 7621 tttaacgaat atagaagaag aaaaaccata aaacgtaaca tcccatcaca agtgaacaac 7681 aacataacac aaaaataaat gaaatacaaa attctcaaca accgcgcaca ttgtgtagag 7741 caaattaaat ttattattat taattaatta ttatatatta ttaatataaa tatctaaaaa 7801 tatatatatt taatttttgt ctttgtctat gtttatttca aatctaactc ttaacttaaa 7861 acacaaaata taaaaaaact cattgaaata aaaaaccaca taaaacttac ttagtaaaca 7921 taatttattt ttaattattt aattatgctc ttattctaat tacatgaaac aacaaaaaaa 7981 aaacaaaaac aaactcaaca tcaacaaaaa caaccataca cttaaaacaa aaccaacaaa 8041 caaacaacaa caaaaaatat tattaattaa ccataaactt tattatatca atgtttaatt 8101 attcttcaaa caaaaacata ataataacga taacgataat gcaaatgaca aaaaactcaa 8161 aaaatttgta ataataaaat taaaaaaaaa aaaaacaaaa acatacatga aaacttcaac 8221 aattttatta taacaaagtg aaatatgaaa aaaaaaccaa cagcatgaga tatggcaaag 8281 caaaaaacag cccagtgaaa acgcagcatg aagaaaaaga agaatgagaa atctctttaa 8341 caaaaactct aaaaaataaa caaaaatata ataataaata tatatttgta tgtgtgtaga 8401 attttctttt ttagccatac atatgtttat gtttaaccgt ttgattgtcg cattaattaa 8461 tgaattaatt aattaattat ctacttatac taatttattg tcaaatttat ataaaacaat 8521 tcttttttaa aaacaaaacc aaaccaaaaa aatatccgca aaaataaaac aacaactcta 8581 tttattatat atatgaaaca tacatactta tatataaaga aaaacctcga aaaaaaaaac 8641 caaaaaaact tttaactttt atttgattac tttaaatgaa gaaagaggct aagttggctg 8701 ggacattgta tgggggaaga ctaaaggttt gaccaaacga tcatcgcaga gaatgaaaga 8761 acatttttgg aaatctaaaa gactgtcata acatcaaaag taacaaaaat gaagaaaaaa 8821 aaacaaaaca tcaaaaaaga aaattcatca aagactagtt tggcgctgta gtgttaaagg 8881 gagtaataat aaataaaaga agaagaactt tttcaaaaat ctctaactct taacaacgag 8941 atcgagaggg ttttttttgc acaaatgaaa agtctttcaa aaagcacgtc aatatatatt 9001 ttatgtaatg ttctacatcc gcaccctttt attgggtctc aaaatcttgt tagaatctca 9061 ataggatatt gtacagattt ataccattaa gtttaatact tcaaaaagga gatacatcca 9121 gaaaagaaca gcaagattgt acaaatcttc ttttctgatt acacaatctg cacgattctg 9181 caaaaaaatt aaggtagttc acttatccac aactattgtc tagtgtttat agtacaaaag 9241 aagcattgaa cgtaatggtc aaaccaataa gttcaattct gtgttaaggg caaattgacg 9301 aaaaagagaa tgaaagctta actttgaatt ttagaaatag tgaagaagca accactttac 9361 gtaatgctga aatattggcc gtgttgaatt tctaagcata ttataggaac tttaaaaaat 9421 atctcactcg caaatttttg caaaacaaat aataccaggc atttcttctc taaattaact 9481 caatgttatt gtattattat tacttccttt gtcaaactaa tgatttaaag aactctacac 9541 taatactaat tcaacatggc ttacttcatt cgacgtataa gtaaaatata gattagcttc 9601 attagaaaag ttccataaat tttctaaatt tgtatatata agaaacacat ctactgaaat 9661 atattcttga ttattcatga aatgattaaa aatatccaaa taagagaacg caaacagaca 9721 tcttcagaaa cctacaaatg gcttacgcca aatttgttaa ataactaatt accaaatcca 9781 aatcccttac taatataagg cattattgaa aattcatata gtgtcttatg tatgtattga 9841 acttcaaacc aaaggaatac tccataagat gagtattgct ttggtctgaa atttaattga 9901 tagaatacga ggaaaacgag gaaaacga