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LOCUS XM_059366318 9201 bp mRNA linear INV 02-SEP-2023 transcript variant X2, mRNA. ACCESSION XM_059366318 VERSION XM_059366318.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9201 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..9201 /gene="LOC106087570" /note="ELAV-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106087570" CDS 2171..3295 /gene="LOC106087570" /codon_start=1 /product="ELAV-like protein 3 isoform X1" /protein_id="XP_059222301.1" /db_xref="GeneID:106087570" /translation="MTNAMDIVIKNGSTNGSVDGNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKISVLPASLQALNPALQQVLPFSGQSLGYGFVNYVRPEDAEK AVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEALFAPYGKIIT SRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYTEPITVKFANNPSNSAK AQIPPPLAAYLTPQAAAATRRLTAGALPSAGRISIGKSPMFAINKGLQRYSPLAGDLL ANSILPGNAITGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGF GFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNKTKTA" polyA_site 9201 /gene="LOC106087570" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcatatt gttatcaatc gacaaaccat aaggatcgtc gtcctcagtc gtacgtgttc 61 gtttgttgct ttcgttcgtt catttttcga gaacattcag ttttaaatat ctttagttta 121 ttgttttcgg actcctctgc actctattaa tgcaataatt ttgtgttaaa acaattgcaa 181 aaacaaacaa aaaaaaacaa caacaaccaa aaagaaaacc tagccaaaca ccaacaggaa 241 aaatcataag aaaaaaacaa caacatccaa tttaccaagg ttctcagtta caagtccagt 301 agtccattca aaactcggtt cacaatttcg actttcgttt cgttacaaaa aaattgtttt 361 tttgaaacaa aaacaaacca acaccggctt ccaaaaataa aaaggaacta gaaaagaaaa 421 gaaggaaagc atagcaaaga aaacaaacag ctacaggaca atccgagttt aacttgggac 481 tcctttgtaa tatccaagaa aaaataaaaa cactatagac tttgttgccg tggtttatca 541 acaacaacaa cactataaca gccaataaca ccaccccccc aaaaggaaag gaggaaaaaa 601 gatttcaaac gggcattttg caatattatt ttctaatcta aataacaaaa aatcaaattc 661 gtaacaattt attcaagata attgttaaga ataaaggcca aattattaga attcaaaaac 721 aaaaacaaca aattaaaacc taaattttga actttgttaa taaaccaaat ttttttctaa 781 atattcttcg tcattattat cgttagtaac gtttcatcgt ctgtgtgtgc ataaattgtg 841 ttcaacgtcg tttttctagt caaatttttg ttacaaaaaa aaactaaaga aaaggaaaat 901 ttaccacggt ttaaataaaa atttccgcta atttttcttc tgtgtcactg agttgtaaat 961 ttgagattat tattattacc acatataaat tattttccgg aaaaacttta tggtctatgt 1021 ctacactacc acatatacgg agctaacaga cagaaatatt tgatacaaac tacagaaatt 1081 tatacacttt gagtaagcaa tcgagcagct attaattgta caccaagtga gaaaatacaa 1141 aaacccaaaa aaaaaaaaat attttatatt attccaaaat caagaatatt ccaaaacaaa 1201 aaaaaacaac aaacagaaat cttgcaaatc aacaccacca aagaaaacca actattacag 1261 agctaacaaa aacaaaaata acgaattgac aacaacaacc acaaaaaaaa aaaacaaaaa 1321 taataatcat ttatacactt taatagagac tcagaaaaag atttaagaat tttttgagta 1381 taaatcaacc aaatgttcca tattgaaata caacaacaac aacaagagta acagcaacaa 1441 caaaaataaa tttataaaat ttaagaactc tagtcaaata aaaacagaaa acaacaacaa 1501 caaccaaatt tacgctaaag aactttttgc atttttgcaa ttttataaaa accagaagaa 1561 aacccaacaa caacaacaac aacaaatcaa ccaaacagca ttccaaaaca aaagaaagaa 1621 aattcacatt caccaaccaa actaaagaaa aaataacaaa aacaaaacca aaatcattag 1681 caaaatttac tcttttaact tttattatta aaaaatttaa acaattttaa ataaattacc 1741 aactcttata aattaatgat ccaaacaaag atctaaaact ccaactccat ttaagaaaag 1801 taaagaaatc ataaccgtga attaaatcgg caaaagcagc agcagcagca accagaagaa 1861 aaaggactac gctttttaag aaggactttc ttataaactg aacgagaatc acaattcccc 1921 agaagaacta aagcatcact aacaacagca tcaataacaa caacttgtgc taagcacact 1981 taaaaaacac atacacaaac aaaacctaag atatttaacg ctgactttaa gtaagcgtca 2041 gagctaacca gcgagcgagc gaaagagaga gcgagagcca gctaatcttc actttttcat 2101 ctacgcgtta ccaaagaaat ctttcaaaat tactctccaa cagcaacaaa ccaccaccac 2161 caccaccaag atgaccaatg ccatggacat tgttatcaaa aatggcagta ccaatgggtc 2221 tgtcgatggc aatgatgaat cgcgcaccaa tctgattgtc aactatttgc cacagaccat 2281 gacgcaggag gagatgcgtt ctctcttctc cagcattggt gaattggaaa gttgcaaatt 2341 ggtgcgagat aaaatttcag tgttgccagc ttccctgcag gccttgaacc cagcattgca 2401 acaagttctg cctttttcag gtcaaagttt gggctacggc tttgttaact atgtgcggcc 2461 cgaagatgcc gagaaggctg tcaacacctt gaatggtttg cgtttgcaga ataaggttat 2521 caaagtctcg tacgcccgtc caagttcgga gtctatcaag ggtgctaatt tatatgtatc 2581 gggtcttccc aaaaatctat cacaaccaga cttggaggcg ttatttgcac catatggcaa 2641 aataataaca tctcgtatac tctgtgataa tatatccggt ctctcgaaag gtgttggttt 2701 tatacgtttc gatcagcgca acgaagccga acgtgcaatc caagaactga atggcaaaac 2761 tcctaaaggt tataccgaac cgattacggt caaatttgcc aataacccaa gcaatagtgc 2821 taaagctcaa atcccaccac cattggccgc ctatttgacg ccacaggcag ctgctgcgac 2881 tagacgtttg actgctggag ctttgccatc tgctggccgt ataagcattg gaaaaagccc 2941 catgtttgcc attaacaagg gtctacaaag atattccccc ctggctggtg atctattggc 3001 aaattccata ttgccgggca atgccataac tggttccggt tggtgtatat tcgtttacaa 3061 tttggcaccc gaaacggaag agaatgtctt gtggcaattg tttggcccct tcggtgccgt 3121 ccaatcggtt aaggtaatcc gcgacctgca gaccagcaaa tgtaaaggtt tcggctttgt 3181 taccatgacc aattatgatg aagcggttgt ggctatacaa tcattgaatg gttatacttt 3241 aggtaatcgt gttttgcaag taagctttaa gaccaataaa acaaaaaccg cttaaatagt 3301 agctcatctg tatgtatgtg cagtgcagca gctgcaattc tattgtaagt tagcatttgc 3361 aaatggtcgg cccgagacga ctagatttct aaacatacta aaccgaaaaa aactgaaatt 3421 tatttaaaag aaaacaaaaa attaaacaat atcagacaat gtactaagag attttgtggt 3481 aggtggttaa gatgaattga acttaaaaga gggaaatagg atgggaattt ttttaacaca 3541 agaaaagaag gacttcaagg caatgaatga ttgcatatag atgaaggcat cgtattagac 3601 tttaattatg cttcgctggc aaagtaatag tactgctatg gtagtttatt ctctacaact 3661 acgagttctc cttctacggt gatctactcc tctagtcgaa gtgttcttgg agaaattagt 3721 tttatttaga tgaaggcatt aagagttctg ctactgcggt gatctgttcc tctagtcgag 3781 gttttctttg actatccagc agcttatccg ctgtatatac atagtaggca gtatgatttt 3841 ggatctcatt tcctcttgtt gatcagaacg gacttttaaa gtttccatat aaccgggaat 3901 attctctctg actgacatct gttacagatt tcccgaacta acatcagttt ctgatgttct 3961 gaactgacat ctaagagtgt aattctgaat tctcctttag ctgagattgc cttcggtggg 4021 gattttaaag tctttcccct tgctgatgaa aactagcatc gtaaatttct atatattagc 4081 ataaattcct tccgaaagac atctagtata gcaggagtat ctctgattac ctttcgccaa 4141 taataaggaa tatcgcatct actattctgt tcgtgaaggt tatgggtatt gctggagata 4201 acgatatatc tattactggt aatgttctga catatagtgg tctgttccgg ttttcgaaaa 4261 cgtaaaatga aagattttct ttgccttata gattggaaag tttgccaaaa ctatattgga 4321 atgcatagtg taatgaaatt tctttatatt agggaacttc aagtgatttc aaaccataaa 4381 agaataatac ttagcaaata tcggcaaaac atttactttc gctttgagaa ttcgataatg 4441 ggaacaggcc ttatactaac ctacataaca acataacgta tacttaaaac aatgaatttc 4501 ttcaagatgc gaaatttctt ctataatgcc ttctgagatt gctatcaaca attcattgtt 4561 tttaagattt attatctgtc gatatttttt tgctgatcaa gatcggaaaa atgcttcacg 4621 cgtgtctctc gacttatgcc gaactccctt acggtaccgg ctaaaatccc accatatgtc 4681 attacgtcag tacgtctccc acctagctct gtaactatca aggatagctg ctaaaacccc 4741 accatctggc accctggggg attaattcca cctcggaaac actttcgcat tacttcgaga 4801 tggaccccat atctagtgat tatccacatc atcttcgttg tgtctgcgtt cagacctctg 4861 caatctacgc cgctgcgtct aagtccatat tctccctgcg cagtagttct tcggctaatc 4921 tgcgatgaga agattcttct cgttctccat cattgctctg aactattgta ccagcgaaac 4981 ctcgtcaatc ctgcatcttt cggctcaacg ctctcaccgc cataattaga aatacttcta 5041 ttgatgacgg gttaagatat gctggagata tgacatattt ataactggta aagttctgac 5101 atacagctag catattcaac ataacgtatt cttaaaataa tgaatatcat ggagaaatgg 5161 aaacataata cttctccatt gaagacttct aaagattgct atcaataatt cattgctttt 5221 aagatttatt gaagtctagg ggtatttttg cggatcagga tggggaaaat gctttacaca 5281 tgtgacgagt atatctcccg ccttatgccg agctccgttt ccatcaacgt cacccggggg 5341 attaacttca cctcggaaac actttctcat tacttcgaga tggaccccat atctgctagt 5401 tattcacatc atcattgtcg cgtctgcgtc tagacctccg cattcattga gtccaggtcc 5461 attttcttcc tgcgcactag ttcatcgacg ttcttctcac tgcctccccg ttcttcttgt 5521 tctccagcat cctctggact attgtgccag atgaaacgtc gccaatcgat gtttctagtt 5581 ccctgagtct ttcgacccag cgcccacagt ggaagaatat gtgttctaca tcgtcagcta 5641 cttcgagttc ctcataaatg catttgccca ttccaagtag gtatatccgg aagtagccat 5701 ggcctgtcaa gatctgtata acgtaatagt tcacgtcgcc ttactttcta tctcttcaca 5761 tgcgtacatc ggtgataaat cattgcgtcc acttggccag actctcattt gtacaatctc 5821 tcgatagtct cctcttgtat gttccgtata tgatccgttt acatctctct tggtgttgca 5881 cctctcggta tagagcctgg catgcaacat ggtctgttgg tctatcagaa tcattacggc 5941 tattacaagg gttgcgggct ccgccactgt ccgatgaagt ctaggggtag ataagtatat 6001 ataaattacc gttaaagcaa gtggtattgc aaagtataaa attcttttgg ggcggttatg 6061 cgaaagttta acagttaagt taagttaagg tgtgtttgtg aagcagtcat tatttgatgg 6121 aatacaagta atgatttaga taatgttatg cctatttgta gtaaaaccac aagttatgac 6181 ttcaacttaa caagtttaat gaaatttatt ccctgaaaaa cgcaataaaa tggtattcta 6241 catctgcctt gcaacacgat cccttcggaa aagttcttat cacactctgg caacgaagaa 6301 agtcatattt tgctttcggt tgcctttttc ccggtaaggt ttaataagcc accctccata 6361 tgattccttt gttatttgtc tgatttacac ttaaagaaat aaatattcgt atagttatgc 6421 tttgatttcc ccctactcaa tgcatggtgt acaaccaaaa cttactagtc aaattttctt 6481 taaattattt attaaaaaaa tttatgtaat ttccaatttt tttgtgaaaa aatgcacgca 6541 ttacgaaaat attccaaaac caaaagaaaa acaaaaaaac tttgttattt agaaaagaaa 6601 attaaaacaa atgctcttta gaaaaaaaag aaaaaatcag aacttaaaga aattgaacaa 6661 caaacacaca aaatatacca tatgtgaaaa accaaataaa gtagagttaa aaaccgacaa 6721 aacaggaaac cagaaaaaac ctccttccta gaaaaaaaga aaaagtcccc atgctgctag 6781 tactactact aaaacaacac ccacaaaaac tatggtaata ataataattc tctaaactat 6841 taacaaagca tagaccatga aaatctagta gacaacagac aacagctaaa gtctttaacg 6901 aatatagaag aagaaaaacc ataaaacgta acatcccatc acaagtgaac aacaacataa 6961 cacaaaaata aatgaaatac aaaattctca acaaccgcgc acattgtgta gagcaaatta 7021 aatttattat tattaattaa ttattatata ttattaatat aaatatctaa aaatatatat 7081 atttaatttt tgtctttgtc tatgtttatt tcaaatctaa ctcttaactt aaaacacaaa 7141 atataaaaaa actcattgaa ataaaaaacc acataaaact tacttagtaa acataattta 7201 tttttaatta tttaattatg ctcttattct aattacatga aacaacaaaa aaaaaacaaa 7261 aacaaactca acatcaacaa aaacaaccat acacttaaaa caaaaccaac aaacaaacaa 7321 caacaaaaaa tattattaat taaccataaa ctttattata tcaatgttta attattcttc 7381 aaacaaaaac ataataataa cgataacgat aatgcaaatg acaaaaaact caaaaaattt 7441 gtaataataa aattaaaaaa aaaaaaaaca aaaacataca tgaaaacttc aacaatttta 7501 ttataacaaa gtgaaatatg aaaaaaaaac caacagcatg agatatggca aagcaaaaaa 7561 cagcccagtg aaaacgcagc atgaagaaaa agaagaatga gaaatctctt taacaaaaac 7621 tctaaaaaat aaacaaaaat ataataataa atatatattt gtatgtgtgt agaattttct 7681 tttttagcca tacatatgtt tatgtttaac cgtttgattg tcgcattaat taatgaatta 7741 attaattaat tatctactta tactaattta ttgtcaaatt tatataaaac aattcttttt 7801 taaaaacaaa accaaaccaa aaaaatatcc gcaaaaataa aacaacaact ctatttatta 7861 tatatatgaa acatacatac ttatatataa agaaaaacct cgaaaaaaaa aaccaaaaaa 7921 acttttaact tttatttgat tactttaaat gaagaaagag gctaagttgg ctgggacatt 7981 gtatggggga agactaaagg tttgaccaaa cgatcatcgc agagaatgaa agaacatttt 8041 tggaaatcta aaagactgtc ataacatcaa aagtaacaaa aatgaagaaa aaaaaacaaa 8101 acatcaaaaa agaaaattca tcaaagacta gtttggcgct gtagtgttaa agggagtaat 8161 aataaataaa agaagaagaa ctttttcaaa aatctctaac tcttaacaac gagatcgaga 8221 gggttttttt tgcacaaatg aaaagtcttt caaaaagcac gtcaatatat attttatgta 8281 atgttctaca tccgcaccct tttattgggt ctcaaaatct tgttagaatc tcaataggat 8341 attgtacaga tttataccat taagtttaat acttcaaaaa ggagatacat ccagaaaaga 8401 acagcaagat tgtacaaatc ttcttttctg attacacaat ctgcacgatt ctgcaaaaaa 8461 attaaggtag ttcacttatc cacaactatt gtctagtgtt tatagtacaa aagaagcatt 8521 gaacgtaatg gtcaaaccaa taagttcaat tctgtgttaa gggcaaattg acgaaaaaga 8581 gaatgaaagc ttaactttga attttagaaa tagtgaagaa gcaaccactt tacgtaatgc 8641 tgaaatattg gccgtgttga atttctaagc atattatagg aactttaaaa aatatctcac 8701 tcgcaaattt ttgcaaaaca aataatacca ggcatttctt ctctaaatta actcaatgtt 8761 attgtattat tattacttcc tttgtcaaac taatgattta aagaactcta cactaatact 8821 aattcaacat ggcttacttc attcgacgta taagtaaaat atagattagc ttcattagaa 8881 aagttccata aattttctaa atttgtatat ataagaaaca catctactga aatatattct 8941 tgattattca tgaaatgatt aaaaatatcc aaataagaga acgcaaacag acatcttcag 9001 aaacctacaa atggcttacg ccaaatttgt taaataacta attaccaaat ccaaatccct 9061 tactaatata aggcattatt gaaaattcat atagtgtctt atgtatgtat tgaacttcaa 9121 accaaaggaa tactccataa gatgagtatt gctttggtct gaaatttaat tgatagaata 9181 cgaggaaaac gaggaaaacg a