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LOCUS XM_059366317 10038 bp mRNA linear INV 02-SEP-2023 transcript variant X1, mRNA. ACCESSION XM_059366317 VERSION XM_059366317.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..10038 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..10038 /gene="LOC106087570" /note="ELAV-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:106087570" CDS 3008..4132 /gene="LOC106087570" /codon_start=1 /product="ELAV-like protein 3 isoform X1" /protein_id="XP_059222300.1" /db_xref="GeneID:106087570" /translation="MTNAMDIVIKNGSTNGSVDGNDESRTNLIVNYLPQTMTQEEMRS LFSSIGELESCKLVRDKISVLPASLQALNPALQQVLPFSGQSLGYGFVNYVRPEDAEK AVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEALFAPYGKIIT SRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTPKGYTEPITVKFANNPSNSAK AQIPPPLAAYLTPQAAAATRRLTAGALPSAGRISIGKSPMFAINKGLQRYSPLAGDLL ANSILPGNAITGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGF GFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNKTKTA" polyA_site 10038 /gene="LOC106087570" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcctccgag tgaactcacc tatggtggtc aacttattcc acctaacata acctatacga 61 tctagagcgt atcgttcagc gctacaagag agaacctcta gttcaagcgg catgggggat 121 atcagtttct ggaaattctg aaaattgcac ctgatctgcg accaagcgtc ccctgtttaa 181 cagcgtagcc agtcccactc gcctctaacc cagatccctc tggatgcacg ccacattagt 241 cgcagagttc ctggatctgg atattcaaca gaatcaagca aacgaataat agaacacaac 301 tcactgctac agcaacaata aggccagatc cttcagcgca gcttgactgt cttcttacac 361 caggcaaata ttcctgcatc ggaatcatct gtaaggcatc gctaaaacaa atttttggaa 421 aacgctactc tcttcgagac ggcaatgtta cctaattcct gggtactcaa tgaagagctc 481 tacacttgaa cgaggcaaga accattcaac gaaactttaa cgctgaatag gaaaaataag 541 tagcaaacga gctaagagat ccttttactg gacatctcgc gccccacatt cggcaaagtg 601 ttctttaaag aatctgcgtc catcaaatgt tccatttaaa agtaaaattc cacatgattt 661 gaagcaaaaa cacgaaacgg agaaaagaac gaatttaaac gcgaattaag gattggaagc 721 gcgcctaaac tcaaaaaaca aaaacaatct gcagtattga tatatacaca agagacaaac 781 caaaggacaa ccaagaagtt ttccagagag aatttcgccc ccccctatga atcccaaaag 841 aaaagttgtg gtctgatcat aaaaagagtg aatatttttt aagaactcaa cgccggctat 901 atgcaaaaaa acaaccttca agaagttgtt caaaaatttt accacactaa gcgacaagcg 961 gcttaaaaag ttgaagacaa aaatctcccc ccaaaaagta aatcaaatat aagcaatttt 1021 cataaatggt gtgtatgcat tttatataga aaataagtgt aagcaaacga ttataagtga 1081 aaaccatttt tttagaaaaa aagaaaaaca aaaacgtaaa gaaaactccc cccaaaataa 1141 aatattgatg ttttatatat ttacacaaaa atatatattg agtgtttaag aattttgagc 1201 aaagactttc ataattataa ttcacccaaa aaagatacag agagaaagag gattaagccc 1261 cacaaaaaag atccacgccc atacacttac atacaaacac acacacacac atgttcacac 1321 accaagcaac acctacaaaa aaggacttcc aacgatttta gcaaaaagac gacgaaattt 1381 taagttcttt taaaataaaa aaatttaaga caaaacaaaa agagaacata cttcaacggt 1441 taacaaataa gaaagacact ttttaaagaa aggccaaatt tttgaactca tcaaccaaca 1501 acaacaacaa caaactataa agtttaaaac tacttcataa gtaaaacgaa aaacttaaaa 1561 aaaaagtata ttaaaaaaaa gcactgcaat aaaaaagggt ttgtgacttt aatgataatt 1621 tttttaatat aaactgtttt tataacaaaa aaaaatacaa aagaaaacaa acattttata 1681 agaaactgaa aaaaaaatcc aaaaatttaa acaaaaaaaa aaaccatttt taaaggaaag 1741 ccaacaaact taaaacatat atcgttaaga caaagtgatt ttttaaccaa aaaataaata 1801 aaaccaagat tccggagcga aacgcgatca aacttcgagt tgttaaaagt ttaaatcata 1861 tatcaactgg aaagatctta caccaagaaa aaagatttga tacaaactac agaaatttat 1921 acactttgag taagcaatcg agcagctatt aattgtacac caagtgagaa aatacaaaaa 1981 cccaaaaaaa aaaaaatatt ttatattatt ccaaaatcaa gaatattcca aaacaaaaaa 2041 aaacaacaaa cagaaatctt gcaaatcaac accaccaaag aaaaccaact attacagagc 2101 taacaaaaac aaaaataacg aattgacaac aacaaccaca aaaaaaaaaa acaaaaataa 2161 taatcattta tacactttaa tagagactca gaaaaagatt taagaatttt ttgagtataa 2221 atcaaccaaa tgttccatat tgaaatacaa caacaacaac aagagtaaca gcaacaacaa 2281 aaataaattt ataaaattta agaactctag tcaaataaaa acagaaaaca acaacaacaa 2341 ccaaatttac gctaaagaac tttttgcatt tttgcaattt tataaaaacc agaagaaaac 2401 ccaacaacaa caacaacaac aaatcaacca aacagcattc caaaacaaaa gaaagaaaat 2461 tcacattcac caaccaaact aaagaaaaaa taacaaaaac aaaaccaaaa tcattagcaa 2521 aatttactct tttaactttt attattaaaa aatttaaaca attttaaata aattaccaac 2581 tcttataaat taatgatcca aacaaagatc taaaactcca actccattta agaaaagtaa 2641 agaaatcata accgtgaatt aaatcggcaa aagcagcagc agcagcaacc agaagaaaaa 2701 ggactacgct ttttaagaag gactttctta taaactgaac gagaatcaca attccccaga 2761 agaactaaag catcactaac aacagcatca ataacaacaa cttgtgctaa gcacacttaa 2821 aaaacacata cacaaacaaa acctaagata tttaacgctg actttaagta agcgtcagag 2881 ctaaccagcg agcgagcgaa agagagagcg agagccagct aatcttcact ttttcatcta 2941 cgcgttacca aagaaatctt tcaaaattac tctccaacag caacaaacca ccaccaccac 3001 caccaagatg accaatgcca tggacattgt tatcaaaaat ggcagtacca atgggtctgt 3061 cgatggcaat gatgaatcgc gcaccaatct gattgtcaac tatttgccac agaccatgac 3121 gcaggaggag atgcgttctc tcttctccag cattggtgaa ttggaaagtt gcaaattggt 3181 gcgagataaa atttcagtgt tgccagcttc cctgcaggcc ttgaacccag cattgcaaca 3241 agttctgcct ttttcaggtc aaagtttggg ctacggcttt gttaactatg tgcggcccga 3301 agatgccgag aaggctgtca acaccttgaa tggtttgcgt ttgcagaata aggttatcaa 3361 agtctcgtac gcccgtccaa gttcggagtc tatcaagggt gctaatttat atgtatcggg 3421 tcttcccaaa aatctatcac aaccagactt ggaggcgtta tttgcaccat atggcaaaat 3481 aataacatct cgtatactct gtgataatat atccggtctc tcgaaaggtg ttggttttat 3541 acgtttcgat cagcgcaacg aagccgaacg tgcaatccaa gaactgaatg gcaaaactcc 3601 taaaggttat accgaaccga ttacggtcaa atttgccaat aacccaagca atagtgctaa 3661 agctcaaatc ccaccaccat tggccgccta tttgacgcca caggcagctg ctgcgactag 3721 acgtttgact gctggagctt tgccatctgc tggccgtata agcattggaa aaagccccat 3781 gtttgccatt aacaagggtc tacaaagata ttcccccctg gctggtgatc tattggcaaa 3841 ttccatattg ccgggcaatg ccataactgg ttccggttgg tgtatattcg tttacaattt 3901 ggcacccgaa acggaagaga atgtcttgtg gcaattgttt ggccccttcg gtgccgtcca 3961 atcggttaag gtaatccgcg acctgcagac cagcaaatgt aaaggtttcg gctttgttac 4021 catgaccaat tatgatgaag cggttgtggc tatacaatca ttgaatggtt atactttagg 4081 taatcgtgtt ttgcaagtaa gctttaagac caataaaaca aaaaccgctt aaatagtagc 4141 tcatctgtat gtatgtgcag tgcagcagct gcaattctat tgtaagttag catttgcaaa 4201 tggtcggccc gagacgacta gatttctaaa catactaaac cgaaaaaaac tgaaatttat 4261 ttaaaagaaa acaaaaaatt aaacaatatc agacaatgta ctaagagatt ttgtggtagg 4321 tggttaagat gaattgaact taaaagaggg aaataggatg ggaatttttt taacacaaga 4381 aaagaaggac ttcaaggcaa tgaatgattg catatagatg aaggcatcgt attagacttt 4441 aattatgctt cgctggcaaa gtaatagtac tgctatggta gtttattctc tacaactacg 4501 agttctcctt ctacggtgat ctactcctct agtcgaagtg ttcttggaga aattagtttt 4561 atttagatga aggcattaag agttctgcta ctgcggtgat ctgttcctct agtcgaggtt 4621 ttctttgact atccagcagc ttatccgctg tatatacata gtaggcagta tgattttgga 4681 tctcatttcc tcttgttgat cagaacggac ttttaaagtt tccatataac cgggaatatt 4741 ctctctgact gacatctgtt acagatttcc cgaactaaca tcagtttctg atgttctgaa 4801 ctgacatcta agagtgtaat tctgaattct cctttagctg agattgcctt cggtggggat 4861 tttaaagtct ttccccttgc tgatgaaaac tagcatcgta aatttctata tattagcata 4921 aattccttcc gaaagacatc tagtatagca ggagtatctc tgattacctt tcgccaataa 4981 taaggaatat cgcatctact attctgttcg tgaaggttat gggtattgct ggagataacg 5041 atatatctat tactggtaat gttctgacat atagtggtct gttccggttt tcgaaaacgt 5101 aaaatgaaag attttctttg ccttatagat tggaaagttt gccaaaacta tattggaatg 5161 catagtgtaa tgaaatttct ttatattagg gaacttcaag tgatttcaaa ccataaaaga 5221 ataatactta gcaaatatcg gcaaaacatt tactttcgct ttgagaattc gataatggga 5281 acaggcctta tactaaccta cataacaaca taacgtatac ttaaaacaat gaatttcttc 5341 aagatgcgaa atttcttcta taatgccttc tgagattgct atcaacaatt cattgttttt 5401 aagatttatt atctgtcgat atttttttgc tgatcaagat cggaaaaatg cttcacgcgt 5461 gtctctcgac ttatgccgaa ctcccttacg gtaccggcta aaatcccacc atatgtcatt 5521 acgtcagtac gtctcccacc tagctctgta actatcaagg atagctgcta aaaccccacc 5581 atctggcacc ctgggggatt aattccacct cggaaacact ttcgcattac ttcgagatgg 5641 accccatatc tagtgattat ccacatcatc ttcgttgtgt ctgcgttcag acctctgcaa 5701 tctacgccgc tgcgtctaag tccatattct ccctgcgcag tagttcttcg gctaatctgc 5761 gatgagaaga ttcttctcgt tctccatcat tgctctgaac tattgtacca gcgaaacctc 5821 gtcaatcctg catctttcgg ctcaacgctc tcaccgccat aattagaaat acttctattg 5881 atgacgggtt aagatatgct ggagatatga catatttata actggtaaag ttctgacata 5941 cagctagcat attcaacata acgtattctt aaaataatga atatcatgga gaaatggaaa 6001 cataatactt ctccattgaa gacttctaaa gattgctatc aataattcat tgcttttaag 6061 atttattgaa gtctaggggt atttttgcgg atcaggatgg ggaaaatgct ttacacatgt 6121 gacgagtata tctcccgcct tatgccgagc tccgtttcca tcaacgtcac ccgggggatt 6181 aacttcacct cggaaacact ttctcattac ttcgagatgg accccatatc tgctagttat 6241 tcacatcatc attgtcgcgt ctgcgtctag acctccgcat tcattgagtc caggtccatt 6301 ttcttcctgc gcactagttc atcgacgttc ttctcactgc ctccccgttc ttcttgttct 6361 ccagcatcct ctggactatt gtgccagatg aaacgtcgcc aatcgatgtt tctagttccc 6421 tgagtctttc gacccagcgc ccacagtgga agaatatgtg ttctacatcg tcagctactt 6481 cgagttcctc ataaatgcat ttgcccattc caagtaggta tatccggaag tagccatggc 6541 ctgtcaagat ctgtataacg taatagttca cgtcgcctta ctttctatct cttcacatgc 6601 gtacatcggt gataaatcat tgcgtccact tggccagact ctcatttgta caatctctcg 6661 atagtctcct cttgtatgtt ccgtatatga tccgtttaca tctctcttgg tgttgcacct 6721 ctcggtatag agcctggcat gcaacatggt ctgttggtct atcagaatca ttacggctat 6781 tacaagggtt gcgggctccg ccactgtccg atgaagtcta ggggtagata agtatatata 6841 aattaccgtt aaagcaagtg gtattgcaaa gtataaaatt cttttggggc ggttatgcga 6901 aagtttaaca gttaagttaa gttaaggtgt gtttgtgaag cagtcattat ttgatggaat 6961 acaagtaatg atttagataa tgttatgcct atttgtagta aaaccacaag ttatgacttc 7021 aacttaacaa gtttaatgaa atttattccc tgaaaaacgc aataaaatgg tattctacat 7081 ctgccttgca acacgatccc ttcggaaaag ttcttatcac actctggcaa cgaagaaagt 7141 catattttgc tttcggttgc ctttttcccg gtaaggttta ataagccacc ctccatatga 7201 ttcctttgtt atttgtctga tttacactta aagaaataaa tattcgtata gttatgcttt 7261 gatttccccc tactcaatgc atggtgtaca accaaaactt actagtcaaa ttttctttaa 7321 attatttatt aaaaaaattt atgtaatttc caattttttt gtgaaaaaat gcacgcatta 7381 cgaaaatatt ccaaaaccaa aagaaaaaca aaaaaacttt gttatttaga aaagaaaatt 7441 aaaacaaatg ctctttagaa aaaaaagaaa aaatcagaac ttaaagaaat tgaacaacaa 7501 acacacaaaa tataccatat gtgaaaaacc aaataaagta gagttaaaaa ccgacaaaac 7561 aggaaaccag aaaaaacctc cttcctagaa aaaaagaaaa agtccccatg ctgctagtac 7621 tactactaaa acaacaccca caaaaactat ggtaataata ataattctct aaactattaa 7681 caaagcatag accatgaaaa tctagtagac aacagacaac agctaaagtc tttaacgaat 7741 atagaagaag aaaaaccata aaacgtaaca tcccatcaca agtgaacaac aacataacac 7801 aaaaataaat gaaatacaaa attctcaaca accgcgcaca ttgtgtagag caaattaaat 7861 ttattattat taattaatta ttatatatta ttaatataaa tatctaaaaa tatatatatt 7921 taatttttgt ctttgtctat gtttatttca aatctaactc ttaacttaaa acacaaaata 7981 taaaaaaact cattgaaata aaaaaccaca taaaacttac ttagtaaaca taatttattt 8041 ttaattattt aattatgctc ttattctaat tacatgaaac aacaaaaaaa aaacaaaaac 8101 aaactcaaca tcaacaaaaa caaccataca cttaaaacaa aaccaacaaa caaacaacaa 8161 caaaaaatat tattaattaa ccataaactt tattatatca atgtttaatt attcttcaaa 8221 caaaaacata ataataacga taacgataat gcaaatgaca aaaaactcaa aaaatttgta 8281 ataataaaat taaaaaaaaa aaaaacaaaa acatacatga aaacttcaac aattttatta 8341 taacaaagtg aaatatgaaa aaaaaaccaa cagcatgaga tatggcaaag caaaaaacag 8401 cccagtgaaa acgcagcatg aagaaaaaga agaatgagaa atctctttaa caaaaactct 8461 aaaaaataaa caaaaatata ataataaata tatatttgta tgtgtgtaga attttctttt 8521 ttagccatac atatgtttat gtttaaccgt ttgattgtcg cattaattaa tgaattaatt 8581 aattaattat ctacttatac taatttattg tcaaatttat ataaaacaat tcttttttaa 8641 aaacaaaacc aaaccaaaaa aatatccgca aaaataaaac aacaactcta tttattatat 8701 atatgaaaca tacatactta tatataaaga aaaacctcga aaaaaaaaac caaaaaaact 8761 tttaactttt atttgattac tttaaatgaa gaaagaggct aagttggctg ggacattgta 8821 tgggggaaga ctaaaggttt gaccaaacga tcatcgcaga gaatgaaaga acatttttgg 8881 aaatctaaaa gactgtcata acatcaaaag taacaaaaat gaagaaaaaa aaacaaaaca 8941 tcaaaaaaga aaattcatca aagactagtt tggcgctgta gtgttaaagg gagtaataat 9001 aaataaaaga agaagaactt tttcaaaaat ctctaactct taacaacgag atcgagaggg 9061 ttttttttgc acaaatgaaa agtctttcaa aaagcacgtc aatatatatt ttatgtaatg 9121 ttctacatcc gcaccctttt attgggtctc aaaatcttgt tagaatctca ataggatatt 9181 gtacagattt ataccattaa gtttaatact tcaaaaagga gatacatcca gaaaagaaca 9241 gcaagattgt acaaatcttc ttttctgatt acacaatctg cacgattctg caaaaaaatt 9301 aaggtagttc acttatccac aactattgtc tagtgtttat agtacaaaag aagcattgaa 9361 cgtaatggtc aaaccaataa gttcaattct gtgttaaggg caaattgacg aaaaagagaa 9421 tgaaagctta actttgaatt ttagaaatag tgaagaagca accactttac gtaatgctga 9481 aatattggcc gtgttgaatt tctaagcata ttataggaac tttaaaaaat atctcactcg 9541 caaatttttg caaaacaaat aataccaggc atttcttctc taaattaact caatgttatt 9601 gtattattat tacttccttt gtcaaactaa tgatttaaag aactctacac taatactaat 9661 tcaacatggc ttacttcatt cgacgtataa gtaaaatata gattagcttc attagaaaag 9721 ttccataaat tttctaaatt tgtatatata agaaacacat ctactgaaat atattcttga 9781 ttattcatga aatgattaaa aatatccaaa taagagaacg caaacagaca tcttcagaaa 9841 cctacaaatg gcttacgcca aatttgttaa ataactaatt accaaatcca aatcccttac 9901 taatataagg cattattgaa aattcatata gtgtcttatg tatgtattga acttcaaacc 9961 aaaggaatac tccataagat gagtattgct ttggtctgaa atttaattga tagaatacga 10021 ggaaaacgag gaaaacga