PREDICTED: Stomoxys calcitrans NADH-ubiquinone oxidoreductase chain

LOCUS       XM_059366307            1704 bp    mRNA    linear   INV 02-SEP-2023
            5-like (LOC131996659), mRNA.
ACCESSION   XM_059366307
VERSION     XM_059366307.1
DBLINK      BioProject: PRJNA1009844
KEYWORDS    RefSeq; corrected model.
SOURCE      Stomoxys calcitrans (stable fly)
  ORGANISM  Stomoxys calcitrans
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Muscoidea; Muscidae; Stomoxys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_081555) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963082655.1-RS_2023_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/29/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 4 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Stomoxys calcitrans"
                     /mol_type="mRNA"
                     /db_xref="taxon:35570"
                     /chromosome="4"
     gene            1..1704
                     /gene="LOC131996659"
                     /note="NADH-ubiquinone oxidoreductase chain 5-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 25 Proteins"
                     /db_xref="GeneID:131996659"
     CDS             389..1228
                     /gene="LOC131996659"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 4 bases at 4
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:446..448,aa:OTHER)
                     /transl_except=(pos:467..469,aa:OTHER)
                     /transl_except=(pos:581..583,aa:OTHER)
                     /transl_except=(pos:698..700,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: NADH-ubiquinone
                     oxidoreductase chain 5-like"
                     /protein_id="XP_059222290.1"
                     /db_xref="GeneID:131996659"
                     /translation="MLTALSNRIGDVALLLAIAXILNYGSXNYIFYLEVIKSNFDIII
                     IISLVILAAITKRAQIPFSSXLPAAIAAPTPVSALVHSSTLVTAGVYLLIRFNILLRN
                     TXIGNLLLLLSGLTIFIAGLGANYEFDLKKIIALSTLRQLGLIMRILSIGFYKLAFFH
                     LLTHALFKALLFICAGAIIHNMNNTQDIRLIGSLSIIIPLTSSCFNVANLALCGIPFL
                     AGFYSKDLILEIVSFSYINLFSFFLFFFSTGLTVCYSFRLVFYTITGDSNFSSLNILN
                     DEG"
     polyA_site      1704
                     /gene="LOC131996659"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tttttcatta tttttttgta gattattatc atttacaata ggaataattt ttattataaa
       61 tgattattca atttttattg aatgagaagt tgtatcttta aattctataa taattgtaat
      121 aactatttta ttagattgaa taagattaat ttttatatct tttgttttaa taatttcttc
      181 tttagtaatt ttttatagaa aagaatatat agaaagtgat tataaaatta atcgatttat
      241 tatattagta ttaatatttg ttacttctat aatattatta attattagtc caaatttaat
      301 tagaatttta ttagggtgag atgggttagg attagtatct tattgtttag taatttattt
      361 tcaaaatgta aaatcatata atgctgggat gttgactgct ttatcaaatc gaattggtga
      421 tgtagcttta ttattagcaa ttgcatgaat attaaattat gggagttgaa attatatttt
      481 ttatttagaa gtaataaaat ctaattttga tataataatt attataagtt tagtaatatt
      541 agctgctata actaaaagag ctcaaattcc attttcttct tgattgccag ctgctatagc
      601 tgctccaact cctgtttcag ctttggttca ttcttctact ttagttacag caggagtata
      661 tttattgatt cggtttaata ttttattaag aaatacttga ataggaaatt tattattatt
      721 gttatcaggt ttaacaatat ttatagctgg attaggagct aattatgaat ttgatttaaa
      781 gaaaattatt gctttatcaa ctttaagaca attaggttta ataatgagaa ttttatctat
      841 aggtttttat aaattagcat tttttcattt attaactcat gctttattta aagctttatt
      901 attcatatgt gcgggagcaa ttattcataa catgaataat actcaagata ttcgtttaat
      961 aggaagttta tcaataataa tacctttaac atcttcttgt tttaatgtag ctaatttagc
     1021 tttatgtgga ataccttttt tagctggatt ttattcaaaa gatttaattt tagaaatagt
     1081 atctttttct tatattaatc ttttttcttt tttcttattt tttttttcta ctggattaac
     1141 agtatgttat tcttttcgat tggtatttta tacaataact ggagattcaa atttttcttc
     1201 tttaaatata ttaaatgatg aaggttgagt tatattaaaa agtataatag gtttattaat
     1261 tttaagaatt tttgggggga gtatattaag atgattaatt tttccaagtc ctatagtaat
     1321 tattttacct aaaactttaa agttattaac attatttgtt tgtattattg gaggaatagt
     1381 aggatattta atttctaatg tgtcattatt ttttataaat aaggcattaa ataattataa
     1441 atcttcttat tttttaggtt caatatgatt tataccttat atttcaactt atggaattat
     1501 taattatcct ttaattgtag gtaaattaag agttaaatct tttgatcaag gttgatctga
     1561 atattttgga ggacaacaac tttattataa tttagtaaaa aattctcagt taaatcaaat
     1621 attacaaaat aataatttaa aaatttattt attgagtttt attttctgag taattatttt
     1681 atatatgtat ataatttatt ttta