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LOCUS XM_059366305 2268 bp mRNA linear INV 02-SEP-2023 (LOC131996657), partial mRNA. ACCESSION XM_059366305 VERSION XM_059366305.1 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq; corrected model. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 11 genomic stop codon ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..2268 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene <1..2268 /gene="LOC131996657" /note="cytochrome c oxidase subunit 1-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 8 Proteins" /db_xref="GeneID:131996657" CDS <1..1455 /gene="LOC131996657" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: substituted 11 bases at 11 genomic stop codons" /codon_start=1 /transl_except=(pos:46..48,aa:OTHER) /transl_except=(pos:214..216,aa:OTHER) /transl_except=(pos:280..282,aa:OTHER) /transl_except=(pos:349..351,aa:OTHER) /transl_except=(pos:529..531,aa:OTHER) /transl_except=(pos:835..837,aa:OTHER) /transl_except=(pos:940..942,aa:OTHER) /transl_except=(pos:991..993,aa:OTHER) /transl_except=(pos:1159..1161,aa:OTHER) /transl_except=(pos:1321..1323,aa:OTHER) /transl_except=(pos:1390..1392,aa:OTHER) /product="LOW QUALITY PROTEIN: cytochrome c oxidase subunit 1-like" /protein_id="XP_059222288.1" /db_xref="GeneID:131996657" /translation="TNHKDIGTLYFIFGAXSGIVGTSLRILIRAELGHPGALIGDDQI YNVIVTAHAFIIIFFIVIPIIIGGFGNXLVPLILGAPDIAFPRINNISFXLLPPALTL LLVRRIVEKGAGTGXTVYPPLSSNIAHGGASVDLAIFSLHLAGISSILGAVNFITTVI NIRATGITFDRIPLFVXSVVITALLLLLSLPVLAGAITILLTDRNLNTSFFDPAGGGD PILYQHLFWFFGHPEVYILILPGFGIISHIISQESGKKETFGSLGIIYAILAIGLLGF IVXAHHIFTVGIDVDTRAYFTSATIIIAVPTGIKIFRXLATLYGAQLTYSPAILXALG FVFLFTVGGLTGVVLANSSVDIILHDTYYVVAHFHYVLSIGAVFAIIAGFVHXYPLFT GLTINNKLLKSQFVIIFIGVNLTFFPQHFLGLAGIPRRYSDYPDAYTAXNVISTIGST ISLLGILYLFYIIXESLISQRQVIFPIQLNSSIE" polyA_site 2268 /gene="LOC131996657" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 actaatcata aagatattgg tactttatac tttattttcg gagcatgatc aggtatagtc 61 ggaacttctt taagaatttt aattcgagca gaattaggac atcctggagc attaattggt 121 gatgatcaga tttataatgt aattgttact gcacatgcat ttattataat tttctttata 181 gttataccaa ttataattgg aggatttgga aattgattag ttccattaat acttggagct 241 cctgacatag ccttccctcg aataaataat ataagttttt gactacttcc tcctgctctt 301 acccttttat tagttagaag aatagtagaa aagggagctg gaactggttg aaccgtatat 361 ccacctttat cttcaaatat tgcacatggt ggggcttctg ttgatttagc tattttttct 421 ttacatttgg caggaatttc atcaattcta ggagctgtaa attttattac tactgtaatt 481 aatatacgag ctacaggaat tacatttgat cgaataccat tatttgtttg atcagttgta 541 attactgctt tattactttt attatctctt cctgttttag ctggtgctat tactatatta 601 ttaacagatc gaaatttaaa cacttctttc tttgatccag caggaggtgg agatccaatt 661 ttataccaac atttattttg gttttttggt catccagaag tttatatttt aattttacct 721 ggatttggaa taatttctca tattattagt caagaatcag gtaaaaagga aacttttggg 781 tcattaggaa taatttatgc aatattagca attggtttat tagggtttat tgtttgagct 841 caccatatat ttacagttgg aatagatgtt gatactcgag cttattttac ttcagcaact 901 ataattattg ctgtacctac tggaatcaaa attttcagat gacttgcaac actttatggt 961 gctcaattaa cttattcacc agctatttta tgagctttag ggtttgtatt tttattcaca 1021 gttggaggat taactggtgt agttttagct aactcttcag tagatattat tttacatgat 1081 acatattatg tagttgctca ttttcattat gttttatcaa taggagctgt atttgctatt 1141 atagcaggat ttgttcattg atatccttta tttactggat taacaataaa taataaactt 1201 ttaaaaagtc aatttgtaat tatatttatt ggagtaaatt taactttttt ccctcaacat 1261 tttttaggac ttgctggaat acctcgacga tattcagact atccagatgc ttatactgca 1321 tgaaatgtta tttctacaat tggttcaact atttcattat taggaatttt atatttattt 1381 tatattattt gagaaagttt aatttctcaa cgtcaagtaa tctttccaat tcaactaaat 1441 tcttcaattg aatgattaca aaatacacca cctgctgaac atagttataa tgaattgcct 1501 ttattagtaa atttctaata tggcagatta gtgcaatgga tttaagctcc atatataaag 1561 tattttactt ttattagaaa ctaatgtcaa catgagcaaa tttaggttta caagatagtt 1621 cttctccttt aatagaacaa ttaatttttt ttcatgacca cgcactttta attttagtaa 1681 taattacagt actagttgga tacttaatat ttaccttatt ttttaacaat tatgtaaatc 1741 gatttttact tcatggtcaa acaattgaaa ttatttgaac aattcttcct gcaattattt 1801 tactatttat tgcttttcct tctcttcgac ttttatattt actagatgaa attaatgaac 1861 cttcaattac attaaaggca attggtcatc aatgatattg aagctatgaa tattcagatt 1921 ttaataatat tgaatttgat tcttatataa ttccaacaaa tgaattaaat ttagaaaatt 1981 ttcgattatt agatgtagat aatcgagtaa ttttacctat aaattcacaa attcgaattt 2041 tagtaactgc tgcagatgta attcattcat gaacagttcc cgctcttggg gtaaaagttg 2101 atggaactcc aggtcgatta aatcaaacta attttttaat taatcgccct ggattatttt 2161 atggtcaatg ttcagaaatt tgtggagcaa atcatagttt tataccaatt gtaattgaaa 2221 gaattccagt aaattatttt attaaatgaa tttcaaataa taattctt