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LOCUS XM_044396313 4496 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_044396313 VERSION XM_044396313.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396313.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4496 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4496 /gene="dec" /note="defective chorion; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108057735" CDS 78..4427 /gene="dec" /codon_start=1 /product="defective chorion protein, FC177 isoform isoform X1" /protein_id="XP_044252248.1" /db_xref="GeneID:108057735" /translation="MRLHSLLPLLALLAVQAVAQSDTITAEDPPKDAGSKTNSSTETR LRYPSNDEILGQMPPISPIRTGNPQMDAFYMMFPALGSLLRWGSLFPAYSILGAIPDG LQPTAAASKVVLVLAEDATAKTRVARQNPAVPNPFPLLTNWPSLPQEFQIPNMDFAPQ VGAFLAQMPQMPAMPALLGAAAPNPAPVAPAPAAPAAASPAAPDAPPAPAAASPETTF QQSLLGQMQSIMNPANFDATTLLGQGIPALAPIPANMDFVSQMQKQFFPQMSSPASVA QASDISEVRVRPEMAQLAQQKIKATLEKEQEKQEDQEQVPLLWFRMPSGGEGQDATEE KTLEDLRVEAKLRAFERQVIAELKMLQKIELLAKQMRSNAAQSGDPSYRISYPLSRTP VHKITRADIEQALRDDYVRRLVNKEAQRKARNSGAGGQKRQAKAQDQQQLSKEDIVQI MAYAYRMANEQMEGEKGKQDKMYAAYRTGENQAAQQKQTQEMMQQQQRQWSEDQAKIE KNQQPMMQQQPRQMMPDQQQIQQNPMMQQQRQWTEEQARIQKERQWTEDQAKIQQGPM VMQQRQWTEEQARSQQMAQQAPMMMQQRQMEAQPNPMMMQQMQQRQWTEDPQVVQQMQ QRHWAEENEHPGIHPQMMMQQRQWSEEQAKIEQQNAMMMQQMQQRQWSEEQAKIQQQQ QQERQMMKQRQWAEENPQMMMQQQQQQRMEDPEQNMPNNQEMDEPTVGDAGPQMPENE GIARHKVDSLGLGGNKRKKSKSAGHTVVNYYYSAPAQRPAVQNYGSSYGTSYGGGGYG SNAYGVPAYPASSGYQSQGYRAAVGNDEVDDMLRRHQTMARTINPQQPGQVGGSESSS NPPLATTPAPQEQSQSPQPQEHRVHKRLAIFHRFGRGLGDGQGNSTAKGCGCGRLDCR CGRSCQCGRSRGSQRSRCQCKLNRRSKRSVEYGTLETIDEGSLNELRREYKLGLKEIT LSPDEDPAEALMRYNAASIREALERASMEPLEIGGDQYEEGQEQQEPVQQEEVEQVQH DSQYNHRDFVRLTTSTAAPTMSTTSSTEATTTSGGRDSTSEATPSTTTESGGPKDEDS EMQQDSVAHESSHVTKSISKQEQEIHHLHTIVDELKVELIKLNLRCSQIISNNVTKEE PPKEEEKQEQTTVEQEEEQEEEEEGTSTTTSTSACTTTTTTETPPPKAEPKSNAIYGP SNKLDYEDDTNWQRILANRGYDTDYLTKSHEAQFSQGQNLEMTKPCNYENNASQEYSP YPEFQADEPTNADTEGKAKRALSVKQQAQLLNAALNDSGGSDSSDASPTTPTPYAMRG KFVRRRSTARRIPSPRITKETNDGWVRSTRQVRTPQRPKKKVTTSSQVTTQATVSSTK LDSLVDVLKDLLRLQIQREKKSSLLRSQSNPSKTPTTKSIKPIKVIKRKRLRRRQHKP MATTIRSSIQPKA" misc_feature 300..1478 /gene="dec" /note="DEC-1 protein, N-terminal region; Region: DEC-1_N; pfam04625" /db_xref="CDD:368028" misc_feature <1653..>2036 /gene="dec" /note="Topoisomerase II-associated protein PAT1; Region: PAT1; pfam09770" /db_xref="CDD:401645" misc_feature 2238..2612 /gene="dec" /note="Dec-1 protein, C terminal region; Region: DEC-1_C; pfam04626" /db_xref="CDD:282480" ORIGIN 1 agtcggcagt cagtcggcga aagagctccg gcgcacacac cgaatagatc agatcagaag 61 cgatcaccga gttcaggatg agattgcaca gcctgctgcc gctcctggcg ctccttgccg 121 tccaggcggt tgcccaaagt gatacgatca ccgcggaaga tccacccaag gatgccggtt 181 cgaagaccaa ttcctccacg gaaaccagac tgaggtatcc ctccaacgat gagatcctcg 241 gccagatgcc tcccatctcg cccatccgca ctggcaatcc ccagatggac gccttctaca 301 tgatgttccc ggctctgggc agcctcctcc gttggggcag cctcttcccg gcctactcca 361 tcctgggcgc cattcccgat ggcctgcagc ccacggcggc ggcctccaag gtggtgctcg 421 tcctggccga ggatgccacg gccaagacgc gagtggctcg tcagaatcct gctgtaccga 481 atccttttcc cctgctgacg aactggccta gtctgccgca ggagttccaa atacccaaca 541 tggactttgc acctcaagtg ggcgcctttt tggcccaaat gccgcagatg ccggcgatgc 601 ctgccctcct gggtgccgct gctccaaatc ctgctcccgt tgctccagct ccagctgctc 661 cggcagcagc ttctccagct gctccagatg ctccaccagc tccggcagcc gcatctccag 721 aaactacctt ccaacaatcg ctgcttggtc aaatgcaaag catcatgaat ccggccaact 781 ttgatgccac cactctactg ggtcagggaa tacctgcatt ggctccaatc cctgccaaca 841 tggactttgt ttcccaaatg cagaagcaat tcttcccaca aatgtcttca cctgcttccg 901 ttgcccaggc ctccgacatt tccgaggtgc gagtgcgtcc cgagatggct cagttggccc 961 agcagaagat caaggcgaca ctggagaagg agcaagagaa gcaggaggat caggagcagg 1021 tgccactcct ctggttccga atgcccagcg gcggcgaggg tcaggatgcg acggaggaga 1081 agacactgga ggatctgcgg gtggaggcca agctgcgggc cttcgagcgc caggtgatag 1141 ccgagctgaa gatgctgcag aagatcgagc tgctggccaa gcagatgcgt tcgaatgccg 1201 cccagtcggg agatcccagc tacaggatca gctatccgct gagtcgcacg cccgttcaca 1261 agatcacacg tgcggatatc gagcaggctc tgcgggatga ctacgtgcgg cgattggtca 1321 acaaggaggc ccaacgcaag gccaggaact cgggagccgg tggccagaag cgacaggcca 1381 aggcccagga tcagcagcag ctgtccaagg aggacattgt ccagatcatg gcctatgcct 1441 atcgcatggc caacgagcag atggagggtg agaagggcaa gcaggacaag atgtacgcgg 1501 cctacaggac gggcgagaat caggctgccc agcagaagca gacccaagaa atgatgcagc 1561 agcagcagag gcagtggtca gaggatcagg ccaagatcga aaagaatcag caacccatga 1621 tgcaacaaca gccgaggcaa atgatgccgg atcaacaaca gattcaacag aatcccatga 1681 tgcagcagca gagacagtgg actgaagagc aggccaggat ccaaaaggaa agacagtgga 1741 cggaggatca ggccaagatc cagcagggtc ccatggtgat gcaacagaga cagtggacgg 1801 aggagcaggc caggagccag cagatggctc aacaagcccc catgatgatg cagcagaggc 1861 aaatggaggc acaaccgaat cccatgatga tgcagcagat gcaacagagg cagtggaccg 1921 aggatcccca agttgtgcaa cagatgcagc agaggcattg ggcagaggag aatgagcacc 1981 ccggtattca tccacagatg atgatgcagc agagacagtg gtccgaggaa caggccaaga 2041 tcgagcaaca aaatgccatg atgatgcagc agatgcagca aagacagtgg tccgaggagc 2101 aggcaaagat tcagcagcag cagcagcagg agaggcagat gatgaagcaa cgccagtggg 2161 ccgaagagaa tccccagatg atgatgcagc agcagcagca acagcgaatg gaggatccag 2221 aacagaacat gcccaacaac caggagatgg acgaacccac agttggcgat gctggtcccc 2281 agatgccgga gaacgagggt atcgcccggc acaaagtgga ttccctggga ttgggcggca 2341 acaagcgcaa gaagtccaag tccgcaggcc acacggtggt caactactac tattccgctc 2401 cggctcagcg tccggccgtc cagaattacg gaagtagcta tggaacgagc tacggcggcg 2461 gtggctacgg atcgaatgcc tatggggtgc ccgcctatcc agccagctcc ggctatcaaa 2521 gtcagggcta ccgggcagcc gtgggtaacg atgaggtcga tgacatgctg cgccggcacc 2581 aaacgatggc caggacaata aacccccagc aaccgggcca agttggtgga tcggagagca 2641 gctctaatcc tccattggcg acgaccccag ctccccagga gcaatcacaa tcaccgcaac 2701 cgcaagagca tcgagtccac aaaaggttag ccattttcca caggtttggg cgagggttag 2761 gggatggaca gggtaactcc acagccaagg gttgcggatg cggcaggttg gattgccggt 2821 gtggcaggag ttgtcagtgc ggaagatccc gaggatccca aagatcccga tgccagtgca 2881 agttaaatcg ccggagcaag cggagcgtcg agtacggaac cctggagacc atcgacgagg 2941 gctccctcaa cgaactgcgg cgggaataca agctgggcct caaggagatc accctgagtc 3001 ccgacgaaga tcccgccgag gccctgatgc gctacaatgc ggcctccatt cgcgaggctc 3061 tggagagggc cagcatggag ccgctggaga tcggtggcga tcagtacgag gaggggcagg 3121 agcagcagga gcccgtgcag caggaggagg tggagcaagt gcagcatgat agccagtata 3181 atcaccggga ctttgtgcgc ctgaccactt ccacggcagc tcccacgatg tcgacgacga 3241 gcagcacaga ggccaccacc acttcgggag gcagggactc cacttcagaa gctactccct 3301 caaccaccac cgaaagtggt ggtcccaagg acgaggacag cgagatgcag caggattcgg 3361 tggcccacga gagctcccac gtgaccaagt cgatatcgaa gcaggagcag gagatccacc 3421 acctgcacac cattgtggat gagctgaagg tcgagctcat caagctgaac ctcagatgca 3481 gccagatcat atcgaacaat gtgaccaagg aggagccacc caaagaggag gagaagcagg 3541 agcaaaccac agtggagcag gaggaagagc aggaagagga ggaggagggc acctccacta 3601 ccacctccac ctccgcctgc accaccacca cgaccacaga gacgccaccg cccaaggctg 3661 agcccaaatc caatgcaatc tatggcccgt ccaataagct ggactacgaa gacgacacca 3721 attggcagcg cattctggcc aaccggggct acgacacgga ttacctgacc aaaagccacg 3781 aggcccagtt ctcccagggt cagaatctcg agatgacgaa gccctgcaat tacgagaaca 3841 acgcgagtca ggagtactcc ccctatccgg agttccaggc ggatgaacca acgaacgccg 3901 atacggaggg caaggccaag agggccctga gtgtgaagca gcaggcgcag ctcctgaatg 3961 cggccctaaa cgatagtggt ggctccgatt ctagtgatgc ctcccccacc acacccactc 4021 cctacgcgat gaggggaaag tttgtgcgca ggaggagcac ggcgagaagg attcccagcc 4081 cgaggatcac gaaagaaact aacgatggct gggtgaggtc cactcgccag gtgagaaccc 4141 cccagcgacc caaaaagaag gtcaccacca gctcacaggt caccacacag gccaccgtga 4201 gcagcaccaa gctggacagt ttggtggatg tgctcaagga tctgttgcgc ctgcaaattc 4261 agagggagaa aaagtccagc ctcctgaggt cccagagtaa cccctcgaaa accccaacca 4321 ccaaatccat taaacccatc aaagtcatca agcgaaagag gttgcgcaga aggcaacaca 4381 aacccatggc caccaccatt agaagctcca tccaacctaa agcataagaa cccaaaacaa 4441 cccatagaac taacccacaa atcctaacca ttatctagat aagcatattc attcat