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LOCUS XM_044396218 7908 bp mRNA linear INV 09-DEC-2024 paralytic (para), transcript variant X29, mRNA. ACCESSION XM_044396218 VERSION XM_044396218.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396218.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7908 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7908 /gene="para" /note="sodium voltage-gated channel paralytic; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins" /db_xref="GeneID:108059094" CDS 785..7069 /gene="para" /codon_start=1 /product="sodium channel protein para isoform X29" /protein_id="XP_044252153.1" /db_xref="GeneID:108059094" /translation="MTEDSDSISEEERSLFRPFTRESLVQIEQRIAAEHEKQKELERK RAEGEVIRYDDEDEDEGPQPDPTLEQGVPIPVRLQGSFPPELASTPLEDIDPFYSNVL TFVVVSKGKDIFRFSASKAMWMLDPFNPIRRVAIYILVHPLFSLFIITTILVNCILMI MPTTPTVESTEVIFTGIYTFESAVKVMARGFILCPFTYLRDAWNWLDFVVIALAYVTM GIDLGNLAALRTFRVLRALKTVAIVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFAL MGLQIYMGVLTQKCIKKFPLDGSWGNLTDENWDYHNRNSSNWYSEDEGISFPLCGNIS GAGQCDDDYVCLQGFGPNPNYGYTSFDSFGWAFLSAFRLMTQDFWEDLYQLVLRAAGP WHMLFFIVIIFLGSFYLVNLILAIVAMSYDELQKKAEEEEAAEEEAIREAEEAAAAKA AKLEERANAQAQAAADAAAAEEAALHPEMAKSPTYSCISYELFVGGEKGNDDNNKEKM SIRSVEVESESVSVIQRQPAPTTAHQATKVRKVSTYTIRNGRGRFGIPGSDRKPLVLS TYQDAQQHLPYADDSNAVTPMSEENGAIIVPVYYGNLGSRHSSYTSHQSRISYTSHGD LLGGMAVMGVSTMTKESKLRNRNTRNQSVGATNGGTTCLDTNHKLEHRDYEIGLECTD EAGKIKHHDNPFIEPVQTQTVVDMKDVMVLNDIIEQAAGRHSRASDRGVSVYYFPTED DDEDGPTFKDKALEVILKGIDVFCVWDCCWVWLKLQEWISLIVFDPFVELFITLCIVV NTMFMAMDHHDMNKEMERVLKSGNYFFTATFAIEATMKLCAMSPKYYFQEGWNIFDFI IVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWPTLNLLISIMGRTMGALGNLTFV LCIIIFIFAVMGMQLFGKNYHDHKDRFPDGDLPRWNFTDFMHSFMIVFRVLCGEWIES MWDCMYVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGSSSLSAPTADNDTNKIAE AFNRIGRFKSWVKRNIADCFKLIRNKLTNQISDQPSEHGDNELELGHDEILADGLIKK GIKEQTQLEVAIGDGMEFTIHGDMKNNKPKKSKYLNNATDDDTASINSYGSHKNRPFK DESHKGSAETMEGEEKRDASKEDLGLDEELDEEGECEEGPLDGDIIIHAHDEDILDEY PADCCPDSYYKKFPILAGDDDSPFWQGWGNLRLKTFQLIENKYFETAVITMILMSSLA LALEDVHLPQRPILQDILYYMDRIFTVIFFLEMLIKWLALGFKVYFTNAWCWLDFVIV MVSLINFVASLVGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSIFNV LLVCLIFWLIFAIMGVQLFAGKYFKCEDMNGTKLSHEIIPNRNACESENYTWVNSAMN FDHVGNAYLCLFQVATFKGWIQIMNDAIDSREVDKQPIRETNIYMYLYFVFFIIFGSF FTLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPLKAIPRPRWR PQAIVFEIVTDKKFDIIIMLFIGLNMFTMTLDRYDASDTYNAVLDYLNAIFVVIFSSE CLLKIFALRYHYFIEPWNLFDVVVVILSILGLVLSDIIEKYFVSPTLLRVVRVAKVGR VLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKEKSGIND VYNFKTFGQSMILLFQMSTSAGWDGVLDAIINEEACDPPDNDKGYPGNCGSATVGITF LLSYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPEGTQYI RYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDLMYCVDILDALTKDFFARKGN PIEETGEIGEIAARPDTEGYEPVSSTLWRQREEYCARLIQHAWRKHKARGEGGGGGGG SFEPDPDQVDGDGGGDPDAGEPANDEPADGMAEAPAGGGGGGGGGDGSVNGGGTGTGT GDGAADAADESNVNSPGEDAASAAAGAATGATAGSPGAGSAGRQTAVLVESDGFVTKN GHKVVIHSRSPSITSRTADV" misc_feature 1205..2059 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 2408..2908 /gene="para" /note="Cytoplasmic domain of voltage-gated Na+ ion channel; Region: Na_trans_cytopl; pfam11933" /db_xref="CDD:463401" misc_feature 3137..3772 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 3848..4507 /gene="para" /note="Sodium ion transport-associated; Region: Na_trans_assoc; pfam06512" /db_xref="CDD:461936" misc_feature 4517..5332 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 5300..5458 /gene="para" /note="Inactivation gate of the voltage-gated sodium channel alpha subunits; Region: Na_channel_gate; cd13433" /db_xref="CDD:240441" misc_feature 5345..5356 /gene="para" /note="putative hydrophobic latch; other site" /db_xref="CDD:240441" misc_feature 5480..6232 /gene="para" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature 6263..6406 /gene="para" /note="Voltage-dependent L-type calcium channel, IQ-associated; Region: GPHH; pfam16905" /db_xref="CDD:465306" ORIGIN 1 acacgcgctg cggcagctga cagtttcagt aaaccacgga gacgaacgga ttacggctct 61 gggaacaaaa cgcaacgttt gatgaaaatt tttggcaact cgtcgcgtcg tcttggttgt 121 tgttaaccac atcctgctaa cgccaaagtc cgaaaataaa attcaaccca aatacccaaa 181 aataacacag atcaaacaaa caaagcaaaa aaaaagcaaa caaaataaca aaaaaaaacc 241 aaaaaaaaaa acaaacaaaa aattcatctt ctacttgttc taccgcttca actttattcg 301 tcttcgtctc cgtaataaat atataaaaag tatatacata tatatatata tatatatgca 361 tatgtgtgtg agtgcgtcgc gtgtgtgttg gtgcctgtaa atgtgtgagc cacaacaaca 421 acaacagcag cagcagccag agccagagca acaaccacag cagcagcaac aacaacaaca 481 acaacagtag ttaacagcag caacaattct tagcagcaat aacaatacaa gcaagcacca 541 ccacaacaac aagagcagca acaacaccaa aaacagccac aatagcaatc acaataacaa 601 catcaaagga tagagcgagc agccaagcac aacatcgatt gacatcgatt aacgcatcgt 661 gctaagcggc gggcgctaat cgaacatggc gcctcggata tagttgtagc tttaatgtag 721 caggcgacat ccatgtgcct catgccttgg aaatctaagg ctctcatcgt tggccgcata 781 gacaatgaca gaagattccg actcgatatc tgaggaagaa cgcagtttgt tccgtccctt 841 tacccgcgaa tcattggtgc aaatcgaaca acgcattgcc gctgaacatg aaaagcagaa 901 ggagctggaa agaaagagag ccgagggaga ggtgatccga tatgatgacg aggacgagga 961 tgaaggtcca caaccggatc ctacacttga acagggtgtg ccaatacctg ttcgattgca 1021 gggcagcttc ccgccggaat tggcctccac tcctctcgag gatatcgatc ccttctacag 1081 caatgtactg acattcgtag ttgtaagcaa aggaaaagat atttttcgct tttctgcatc 1141 aaaagcaatg tggatgctcg atccattcaa tccgatacgt cgtgtggcca tttacattct 1201 agtgcatcca ttattttccc tattcatcat caccacaatt ctcgtcaact gcatcctgat 1261 gataatgccg acaacgccca cggttgagtc cactgaggtg atattcaccg gaatctacac 1321 atttgaatca gctgttaaag tgatggcacg aggtttcatt ttatgcccgt ttacgtatct 1381 tagagatgca tggaattggc tggacttcgt agtaatagct ttagcttatg tgaccatggg 1441 tatagattta ggtaatctag cagccttgcg aacgtttagg gtgctgcgag cgcttaaaac 1501 cgtagccatt gtgccaggct tgaagaccat cgtcggcgcc gtcatcgaat cggtgaagaa 1561 tctgcgcgat gtgataatcc tcaccatgtt ctccctgtcg gtcttcgcgc tgatgggcct 1621 gcagatctac atgggcgtgc tcacgcagaa gtgcatcaag aagttcccgc tggacggctc 1681 ctggggcaat ctgaccgacg agaactggga ctatcacaat cgcaacagct ccaattggta 1741 ctcggaggac gagggcatct catttccgct gtgcggcaat atatccggcg cggggcaatg 1801 cgacgatgac tacgtgtgtc tgcaggggtt tgggccgaat ccgaactacg gctacaccag 1861 cttcgattca ttcggctggg ccttcctgtc cgccttccgg ctgatgacac aggacttctg 1921 ggaggacctc taccagctgg tgttgcgcgc cgccggacca tggcacatgc tgttctttat 1981 agtcatcatc ttcctaggtt cattctatct tgtgaatttg attttggcca ttgttgccat 2041 gtcgtatgac gaattgcaaa agaaggccga agaagaagag gctgccgaag aggaggcgat 2101 acgtgaagcg gaggaggctg ccgccgccaa agctgccaag ctggaggagc gggccaatgc 2161 gcaggctcag gcagcagcgg atgcggctgc cgccgaagag gctgcactgc atccggagat 2221 ggccaagagt ccgacgtatt cgtgcatcag ctatgagctt ttcgttggcg gcgagaaggg 2281 caacgatgac aacaacaagg agaagatgtc cattcgcagc gtcgaggtgg agtcggagtc 2341 ggtgagcgtt atacaaagac aaccagcacc taccacagca caccaagcta ccaaagttcg 2401 taaagtgagc acgtacacga tacggaacgg acgtggccgc tttggtatac ccggtagcga 2461 tcgcaagccg ttggtattgt caacatatca ggatgcccag cagcacttgc cctatgccga 2521 cgactcgaat gccgtcaccc cgatgtccga ggagaacggg gccatcatag tgcccgtgta 2581 ctatggcaac ctaggctctc ggcactcatc gtatacctcg catcagtccc gaatatcgta 2641 tacctcacat ggcgatctac tcggcggcat ggccgtcatg ggcgtcagca caatgaccaa 2701 ggagagcaaa ttgcgcaacc gcaacacacg caatcaatca gtgggcgcca ccaatggcgg 2761 caccacctgc ctggacacca atcacaagct cgagcatcgc gactacgaaa tcggtctgga 2821 gtgcacggac gaagctggca agattaaaca tcatgacaat ccttttatcg agcccgtcca 2881 gacacaaacg gtggtcgaca tgaaagatgt gatggtcctg aatgacatca tcgaacaggc 2941 cgctggtcgg cacagtcggg caagcgatcg cggtgtctcc gtttactatt ttccaacaga 3001 ggacgatgac gaggacgggc cgacgttcaa agacaaggca ctcgaagtga tcctaaaggg 3061 catcgatgtg ttttgtgtgt gggactgttg ctgggtttgg ttgaaattgc aggagtggat 3121 ctcgctgatc gtcttcgatc ccttcgtcga gctcttcatc acgctgtgca ttgtggtcaa 3181 cacgatgttc atggcgatgg atcaccacga tatgaacaag gagatggagc gcgtgctcaa 3241 gagtggcaac tatttcttca cggccacctt tgccatcgag gccaccatga agctgtgcgc 3301 catgagcccc aagtactatt tccaggaggg ctggaacatc ttcgacttca tcatcgtggc 3361 cctgtcgctt ttggagctgg gtctcgaggg cgtccagggc ctgtccgtct tgcgttcgtt 3421 tcgattgctg cgtgtattta aattggccaa atcttggcca acacttaatt tactcatttc 3481 gattatggga cgcaccatgg gcgctttggg taatctgaca tttgtacttt gcattatcat 3541 cttcatcttt gcggtgatgg gaatgcaact gttcggaaag aattatcatg atcacaagga 3601 ccgtttcccg gatggcgacc tgccgcgctg gaacttcacc gactttatgc acagcttcat 3661 gatcgtgttc cgggtgctct gcggcgaatg gatcgagtcc atgtgggact gtatgtacgt 3721 gggcgatgtc tcgtgcattc ccttcttctt ggccaccgtt gtcatcggca atcttgtggt 3781 acttaacctt ttcttagcct tgcttttgtc caattttggc tcatctagct tatcagcgcc 3841 gactgccgat aacgatacga ataaaatagc cgaggccttc aatcgaattg gccgatttaa 3901 aagttgggtt aagcgtaata ttgctgattg tttcaagtta atacgtaaca aattgacaaa 3961 tcaaataagt gatcaaccat cagagcatgg tgacaacgaa ctggagctgg ggcacgacga 4021 gatcctcgcc gatggcctga tcaagaaggg aatcaaggag cagacgcaac tggaggtggc 4081 catcggggat ggcatggagt tcacgataca cggcgacatg aagaacaaca agccgaagaa 4141 atccaaatat ctaaataacg caacggacga cgacactgcc agcattaact catatggtag 4201 ccataagaat cgaccattca aggacgagag ccacaagggc agcgccgaga cgatggaggg 4261 cgaggagaag cgcgacgcca gcaaggagga tttaggtctc gacgaggaac tggacgagga 4321 gggcgaatgc gaggagggcc cgctcgacgg tgatatcatt attcatgcac acgacgagga 4381 tatactcgat gaatatccag ctgattgctg ccccgattcg tactataaga aatttccgat 4441 cttagccggt gacgatgact cgccgttctg gcaaggatgg ggcaatttac gactgaaaac 4501 ttttcaatta attgaaaata aatattttga aacagctgtt atcactatga ttttaatgag 4561 tagcttagct ttggcattag aagatgtaca tctgccacaa agacccatac tgcaggatat 4621 tttatactat atggacagaa tatttacggt tatattcttc ttggaaatgt taatcaagtg 4681 gttggcgctc ggcttcaaag tgtacttcac caacgcgtgg tgttggctcg atttcgtgat 4741 tgtcatggta tcgcttatca acttcgttgc ttcacttgtt ggagctggtg gtattcaagc 4801 cttcaagact atgcgaacgt taagagcact gagaccacta cgtgccatgt cccgtatgca 4861 gggcatgagg gtcgtcgtta atgcgctggt acaagctata ccgtccatct tcaatgtgct 4921 attggtgtgt ctaatatttt ggctaatttt tgccataatg ggtgtacagc tttttgctgg 4981 aaaatatttt aagtgcgagg acatgaacgg cacgaagctc agccacgaga tcataccaaa 5041 tcgcaatgcc tgcgagagcg agaactacac gtgggtgaat tcagcaatga atttcgatca 5101 tgtaggtaac gcgtatctgt gccttttcca agtggccacc ttcaaaggct ggatacaaat 5161 aatgaacgat gctatcgatt cacgagaggt ggacaagcaa ccaattcgtg aaacgaacat 5221 ctacatgtat ttatatttcg tattcttcat catatttgga tcatttttca cactcaatct 5281 gttcattggt gttatcattg ataattttaa tgagcaaaag aaaaaagcag gtggatcatt 5341 agaaatgttc atgacagaag atcagaaaaa gtactataat gctatgaaaa agatgggctc 5401 taaaaaacca ttaaaagcca ttccaagacc aaggtggcga ccacaagcaa tagtctttga 5461 aatagtaacc gataagaaat tcgatataat cattatgtta ttcattggtc tgaacatgtt 5521 caccatgacc ctcgatcgtt acgatgcgtc ggacacgtac aacgcggtcc tagactatct 5581 caatgcgata ttcgtagtta ttttcagttc cgaatgtcta ttaaaaatat tcgctttacg 5641 atatcactat tttattgagc catggaattt atttgatgta gtagttgtca ttttatccat 5701 cttaggtctc gtacttagcg atattatcga gaagtacttc gtgtcgccga ccctgctccg 5761 agtggtgcgt gtggcgaaag tgggtcgagt cctgcgactg gtgaagggcg ccaagggcat 5821 caggacactg ctattcgcgt tggccatgtc gctgccggcc ctcttcaaca tctgcctgct 5881 gctgttcctg gtcatgttca tcttcgccat cttcggcatg tcgttcttca tgcacgtgaa 5941 ggagaagagc ggcatcaacg acgtctacaa cttcaagacc tttggtcaga gcatgatcct 6001 gctctttcag atgtcgacgt cagccggttg ggatggtgta ctggacgcca ttatcaatga 6061 ggaagcatgc gatccacccg acaacgacaa aggctatccg ggcaattgtg gttcagcgac 6121 cgttggaata acgtttctcc tctcatacct agttataagc tttttgatag ttattaatat 6181 gtacattgct gtcattctcg agaactatag tcaggccacc gaggacgtgc aagagggtct 6241 aaccgacgac gactacgaca tgtactacga gatctggcag caattcgatc cggagggcac 6301 ccagtatata cgctacgacc agctgtccga attcctggac gtgctggagc ccccgctgca 6361 gatccataag ccgaacaagt acaagatcat atcgatggac atacccatct gtcgcggcga 6421 cctcatgtac tgtgtcgaca tcctcgacgc cctcacgaaa gacttctttg cgcgcaaggg 6481 caatccgatt gaggagacgg gcgagatcgg tgagatagcc gcccgtccgg acacggaggg 6541 ctatgagccc gtctcatcga cgctgtggcg ccagcgggag gagtactgtg cccgtctcat 6601 ccagcacgcc tggcggaagc acaaggcgcg cggcgagggc ggtggtggtg gtggtgggtc 6661 cttcgagccg gatccggatc aggtcgatgg cgatggtggt ggcgatccgg atgccgggga 6721 gcctgcaaac gacgaaccgg cggatgggat ggctgaggcc cccgcaggag gaggaggagg 6781 aggaggagga ggagatggta gtgttaatgg tggaggaact ggaactggaa ctggagacgg 6841 agctgccgat gctgccgacg agagcaatgt aaatagtccg ggtgaggatg cagcgtcggc 6901 ggcagcagga gcggcgacag gagcgacggc gggaagtccc ggggcgggca gcgccggacg 6961 acagaccgcc gttctcgtgg agagcgacgg gttcgtgacg aagaacggcc acaaggtggt 7021 catccactcg cgatcgccga gcatcacgtc gcgcacggcg gatgtctgag ccaggcctcg 7081 cccccccctc caagatgcac gcgagtatta gcatgagtac gtgttggatg ttgcatgttg 7141 cgtgttgcgc gttgggtgct taaccaatcc agtgcgtcat gtgcaactaa acagtgagct 7201 aacaacaaca gcgaacaagg cgaacaacaa gcataatttt ctgctatata taatgaaagt 7261 acaccataca acaaaacaat cgaaacaaac caacaacagt aacaacatca tcaagagaac 7321 aaccacaaca acaacagtaa caacaatcga tgaaataacg aagaagaaca acaacaacac 7381 cagtgtaatg tctttgagtt acaaaacata catacataca tatacatact atatatttgt 7441 atacccgcat tattcagtta acgagtcagc aaccaacaac aatcatactt aagctaaaca 7501 accgaaatgt cgaaatattt tgtaagcagc tcgtagtcca atccatttag gcgttttttc 7561 caaaccaaac aatttgccta agcaggtgga agaagaagta aaacatcaac acacccacac 7621 tagagcttga aaatgatcga taaataccga ttcgataata tcgatgtttt caaggcaaaa 7681 cacatattta atatcgagaa agtgcaaact gtcgatattt tccaagctct aacatacaca 7741 caaaacccac acacaacaca ctcacacata accataaaca aatataatcc caaaaaacaa 7801 aaaaccaaaa ccgataacaa agttaaagaa cgatgaacaa gctctaaaaa ttgtatttgc 7861 cagtagtggg acaacaaaca acacgcttga tttaattaac taccaaac