PREDICTED: Drosophila takahashii Ubiquitin specific protease 2

LOCUS       XM_044396206            1862 bp    mRNA    linear   INV 09-DEC-2024
            (Usp2), transcript variant X5, mRNA.
ACCESSION   XM_044396206
VERSION     XM_044396206.2
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_044396206.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1862
                     /gene="Usp2"
                     /note="Ubiquitin specific protease 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon."
                     /db_xref="GeneID:108058857"
     CDS             369..1760
                     /gene="Usp2"
                     /codon_start=1
                     /product="sericin 1 isoform X5"
                     /protein_id="XP_044252141.1"
                     /db_xref="GeneID:108058857"
                     /translation="MRVIAPRRSSTSAAGSGSLYGTSSAGTSGDSSTSGSHHISSSSS
                     TTTGSGAVDRSSGGATTNGYSRYSSSYDRGSSLSKWLPTSSGGSSSSGYGSSYYPSSY
                     STYSANSSSSSSYAPRSSLQRSSVGSTSSSSYLSGGSGTSSSAYRTTSSYLSSSSYDS
                     PTYSRYGLPRKSASKTTTTTNGDSLTRSSNREDYGLRRGQDSAKKPPISGGSGGHSIS
                     NSRDAQGDGSKRLSSSSSSPSLARLVATSGLDIYEKYSPANYKPNCELSRSRSGHSEA
                     ELENGGNKETTPTCTVTLERPRSSSSRYSRLYSNSSDAGGDSSAGSTGRLGSGKYSIN
                     SSSSSGDVPTATFTLRSNRTRRSQAEAPMTTPVESAAAPPAAPPPPPPPPPPTNGHKA
                     GESNGELGAKLNGLSLLSTSPKRNAIYERNQDTTDDAGVCQDSADNADVSTSATFKLN
                     DSSKLNSCRLRSF"
     polyA_site      1862
                     /gene="Usp2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atatcgatag gtcctgaata accatcgatt gtggctccag ctctaatgcg aaagcaccat
       61 cgccgtgcgg tcacactggc caaaataaaa taatttccga ttaaagattt tgtctacaac
      121 ttaagcagca acggaacggg tcatagatgt agcacatagg catcaattaa gtttaaacta
      181 atgctaggca aataattcaa ggataatgta aaataacgcg acgcagacga cgaaaacaga
      241 gaaacggaag caagaccaac aggaaccagc cgctcagcaa tacaacgtgc tgcaaccaga
      301 actaattaag gacaatctca acttcaacct gaatccgggg tttgatcact gccgctgctg
      361 ccactaatat gcgtgtaatt gcgccgcgaa gatcgtcaac gtcagcggcg ggcagcggca
      421 gtctctacgg cacatcgtca gccggcacct ccggcgacag cagcaccagc ggcagccacc
      481 acatcagcag ctccagcagt accaccaccg gcagtggtgc ggtggaccgg tccagcggag
      541 gcgccaccac gaacggttat tcccgctact cgagcagcta cgaccgcggt agcagcctat
      601 ccaagtggct gccaacctcg tctggcggct ccagctcgtc cggctacggc agcagctact
      661 atcccagctc gtactccacg tactcagcca acagctcctc tagctcgtcg tatgcgccgc
      721 gctccagtct gcagaggagc agcgttgggt ccacctcgtc gtcgtcgtat ctgagcggcg
      781 gttccggtac cagctcgtcc gcataccgca ccacctcctc gtatctgagc agctccagct
      841 atgattcacc tacgtatagc cgatacggat taccgcgcaa atcggcgtcc aaaacaacaa
      901 caacaaccaa tggcgacagc ttgaccagat cgtccaacag ggaggactac ggtctgcggc
      961 gcggccaaga ttccgcaaag aagccaccga tcagcggagg aagtggtggc cacagcatca
     1021 gtaacagtag agacgcccaa ggcgatggca gcaagcggtt gtccagttca tcctcatccc
     1081 catcgctggc ccgtttggtg gccacctccg gattggacat atacgaaaag tatagtccgg
     1141 ccaactataa acccaactgt gaactgtcac gttccaggtc ggggcattct gaggcggaac
     1201 tggagaatgg cggcaacaag gagacgacac ccacctgcac ggtgacgctg gagaggcccc
     1261 ggagcagtag cagtcgctac agtcgccttt acagcaatag cagcgatgca ggcggggact
     1321 cctcggcggg ctccacggga agattgggtt ccggcaagta ctcgataaac agcagcagca
     1381 gcagtggcga tgtgcccacg gccaccttta cgcttcgcag caaccgcaca cgtcgcagcc
     1441 aggcggaggc acccatgacc acgccagtgg aatcagcagc agctcctcca gcagctcctc
     1501 caccaccacc accaccacct ccacccacaa atggccacaa ggcaggtgaa tcgaatggcg
     1561 aactgggagc caaactaaat ggtctatcgc tgctatcgac ttcaccgaaa agaaatgcca
     1621 tttatgaacg aaatcaggac accaccgatg atgcaggtgt atgccaggat agtgcggaca
     1681 atgccgatgt gagcacctcg gccacgttta agctaaacga cagtagcaag ctaaactctt
     1741 gcagattgcg atccttctaa cttaaactaa acttaaaaaa aaaccaactt aagtccaact
     1801 aaacgccagg ctaactaaca atactcctaa ctaaaataaa accccctaag aaaccattat
     1861 aa