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LOCUS XM_044396205 3833 bp mRNA linear INV 09-DEC-2024 (Usp2), transcript variant X4, mRNA. ACCESSION XM_044396205 VERSION XM_044396205.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396205.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3833 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3833 /gene="Usp2" /note="Ubiquitin specific protease 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108058857" CDS 369..2072 /gene="Usp2" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase Usp2 isoform X4" /protein_id="XP_044252140.1" /db_xref="GeneID:108058857" /translation="MRVIAPRRSSTSAAGSGSLYGTSSAGTSGDSSTSGSHHISSSSS TTTGSGAVDRSSGGATTNGYSRYSSSYDRGSSLSKWLPTSSGGSSSSGYGSSYYPSSY STYSANSSSSSSYAPRSSLQRSSVGSTSSSSYLSGGSGTSSSAYRTTSSYLSSSSYDS PTYSRYGTAARSGTGSSSSARSVLPPMTPTSNRYWDRDRDSGTSRNSVSTSSALNSSS LKHNSDDGYKSASSSRDEKSEGLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGS RSSSTKDQQILHEFAKLIQEMWTSNVHTVTPMELKRAFSTKHRMYSDYNQQDAQEFLR FFLDSLHSALNSGVKGETLSIDDNLSDNKKADLTWEWYTRHENSLVRDLFVGQLKSTL KCTTCGNTSVTFDPFWDLSVPLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTRR KCTKSFTIQRFPKYLVIHLKRFSETRWSKLSNIVEFPTSDSELNMGSYGANSNSNVHY SLYAISNHMGSTAGGHYVALCKHPASRKWHEFNDNIVSDALSENHLVSSSAYILFYER A" misc_feature <1077..>1619 /gene="Usp2" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 1095..2063 /gene="Usp2" /note="A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19R; cd02674" /db_xref="CDD:239139" misc_feature order(1104..1106,1119..1121,1938..1940,1992..1994) /gene="Usp2" /note="active site" /db_xref="CDD:239139" polyA_site 3833 /gene="Usp2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atatcgatag gtcctgaata accatcgatt gtggctccag ctctaatgcg aaagcaccat 61 cgccgtgcgg tcacactggc caaaataaaa taatttccga ttaaagattt tgtctacaac 121 ttaagcagca acggaacggg tcatagatgt agcacatagg catcaattaa gtttaaacta 181 atgctaggca aataattcaa ggataatgta aaataacgcg acgcagacga cgaaaacaga 241 gaaacggaag caagaccaac aggaaccagc cgctcagcaa tacaacgtgc tgcaaccaga 301 actaattaag gacaatctca acttcaacct gaatccgggg tttgatcact gccgctgctg 361 ccactaatat gcgtgtaatt gcgccgcgaa gatcgtcaac gtcagcggcg ggcagcggca 421 gtctctacgg cacatcgtca gccggcacct ccggcgacag cagcaccagc ggcagccacc 481 acatcagcag ctccagcagt accaccaccg gcagtggtgc ggtggaccgg tccagcggag 541 gcgccaccac gaacggttat tcccgctact cgagcagcta cgaccgcggt agcagcctat 601 ccaagtggct gccaacctcg tctggcggct ccagctcgtc cggctacggc agcagctact 661 atcccagctc gtactccacg tactcagcca acagctcctc tagctcgtcg tatgcgccgc 721 gctccagtct gcagaggagc agcgttgggt ccacctcgtc gtcgtcgtat ctgagcggcg 781 gttccggtac cagctcgtcc gcataccgca ccacctcctc gtatctgagc agctccagct 841 atgattcacc tacgtatagc cgatacggaa cggcggcaag aagcggcact gggagtagca 901 gcagtgctcg gagcgtgctg ccgcccatga cacccacgtc gaatcgctac tgggatcggg 961 atcgggacag cggcactagc cgcaacagcg ttagcacctc ctccgctctc aactcgtcat 1021 ccctgaagca caattcggat gatggctaca agagcgcctc gtcgtcgcgt gatgagaagt 1081 ctgaaggtct gtgcggtctg cgaaacatcg ggaacacttg cttcatgaac tctgtcatcc 1141 agtgtctgag ccacactcag gagctgacac gcttcttgcg gtcgcaccat ggctcccgct 1201 cgtcctccac caaggatcag cagatactcc acgaatttgc caaacttatc caggagatgt 1261 ggacgtcgaa tgtgcacact gtgacgccca tggaactgaa gcgggccttc tccaccaagc 1321 accgcatgta tagcgactat aaccaacagg atgcgcagga gttcctgcgt ttcttcctcg 1381 actcgctgca ctcggcccta aactcgggcg tcaagggtga gacgctcagc attgacgata 1441 atctcagtga caataagaag gcagacctga cctgggaatg gtatacgcgg cacgagaact 1501 cgctggtgcg cgacctcttt gtgggtcagc ttaaaagcac cctgaagtgc accacctgcg 1561 gcaacaccag cgtcaccttc gatccgttct gggatctaag cgtaccgctg ccgtcctcgt 1621 cgcgttgtaa gctggaggcc tgtctcgacc tctttatccg tgaggaggta ctcgacggcg 1681 atgagatgcc cacgtgcgcc aagtgcaaga cgcggcggaa atgcaccaag agcttcacca 1741 ttcagcgttt ccccaaatat ctagttatac acctaaagcg cttttcggaa acgcgctgga 1801 gcaagctgtc caacatcgtt gagttcccca catcggacag cgagctgaac atgggctcct 1861 atggcgccaa ctctaactcg aatgtgcatt actcgctcta tgcgatatcc aatcatatgg 1921 gctcaacagc tggcggtcat tatgtggctc tttgcaagca tcccgcatcc cgcaagtggc 1981 atgagttcaa tgataatatc gtcagcgatg ccttgtccga aaaccatctc gtttcatcca 2041 gtgcctatat tcttttctac gagcgtgcgt aaggcccaat tcgtgcccta cggcaaccgt 2101 caggtgcagt gttgatgacg atgtcccaga tccagatgtc ccggcgcact cctcagatcg 2161 ggatggaaac caggatgacc atgggagcgg gatgagagcg agaggaaatg gaacaaccaa 2221 caaacgaact ctaagaaacg cttcgtagaa ttgcatacaa acaaatttac ttaatttaac 2281 tcaacttaaa agcaaaacag aactaactcc taacttaaag cagaaaccaa aagaaaaacg 2341 gaataaaagt gcatacaaaa cgaggattaa tgtacatata aaaaacgaac ttcgatggct 2401 taacgaaaca agtaaaagaa caataattaa aatccgacga aaaacaatga atctgtgcaa 2461 taaacaactt tcggcaaacc aaaaaacctc aagccccagg ataagtgcaa gagatactaa 2521 tactaactag tggcagaata tacttttgta aggacacaca tagcaatcag cggcagcaac 2581 gatacaatgt ttcactattt ctctcttttt aagtgttatt tataaaaact aaattttcaa 2641 tttacatcgc cccactttcc ttgtctcttt ttcgcctgtc attctatctc tctcttactc 2701 acattggttt gccgaacgat agatagtgtt ctgtggttgt gtgtaaaaaa aataaacaaa 2761 aaatgaaaag tgggagagga aaactaatta tatatttaaa attcgtcttg tgcaatatat 2821 ttcataaaaa tagaaaaaca ataactgcaa taaatataaa taaattcaaa ctaaagacga 2881 ttaaaaccaa acaaaacgca atcgcaccac aaaattcaca ctagctaaga gaaatggctt 2941 tttaacaact aaaaaagaaa gtaatattaa ttaattgata acgagcaaca aattgaatgg 3001 aagggggtgc gaagtgaagc tgaaatctgc attgtgaaaa cgtacttatg ataaatgcta 3061 gtagtaaaat ttaaaaaatt gaagcgatca gcagcaacaa caccaaaaaa ccattgttat 3121 tctttagcca agacaccaat caaccaacaa aaccatccag cccatataaa aaagggaaac 3181 tccccagggc acaaaagacc gttatgaagt tcgtttcaaa tttatgaagt tttttgagtg 3241 tttttttgtt aggcttgggt aaagctacct aaactagtct taaaaacaaa agagtttagt 3301 atgagggcta ctaaacgaaa cctgttttta tttgtttgat tttatgcgta ttttgtagtt 3361 taaggctagc ggttttccat cacctcagca atccctttta tacttgctat atattttttg 3421 ttgcttattt tgttttatac ctacatatat tatgtaattt atttatttat tgtatctatg 3481 taaattatat aaagaacacg gacacctaca cttacatcta tactctgcga aacaggatgt 3541 gtacataatg tagcttgttt ccgacatcca aaagcagcta cagaaaaact aaaacaacat 3601 ctacacggca ccaaaatcta aatgaaagat aataaaaata tacaagacac attatttatt 3661 tatttgtaaa aaaaaatgca actcctatat tttttccggc ttaaatatta gtttcaatta 3721 aaattgttgg atattttact aacgttaaag aaaaccaaaa acattaaaaa aaagaaaaaa 3781 tcaccaagaa aaaaatgcaa aaataaacgc aaaaataaaa ttgaaaaatt taa