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LOCUS XM_044396204 4694 bp mRNA linear INV 09-DEC-2024 (Usp2), transcript variant X3, mRNA. ACCESSION XM_044396204 VERSION XM_044396204.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396204.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4694 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4694 /gene="Usp2" /note="Ubiquitin specific protease 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108058857" CDS 369..2933 /gene="Usp2" /codon_start=1 /product="ubiquitin carboxyl-terminal hydrolase Usp2 isoform X3" /protein_id="XP_044252139.1" /db_xref="GeneID:108058857" /translation="MRVIAPRRSSTSAAGSGSLYGTSSAGTSGDSSTSGSHHISSSSS TTTGSGAVDRSSGGATTNGYSRYSSSYDRGSSLSKWLPTSSGGSSSSGYGSSYYPSSY STYSANSSSSSSYAPRSSLQRSSVGSTSSSSYLSGGSGTSSSAYRTTSSYLSSSSYDS PTYSRYGLPRKSASKTTTTTNGDSLTRSSNREDYGLRRGQDSAKKPPISGGSGGHSIS NSRDAQGDGSKRLSSSSSSPSLARLVATSGLDIYEKYSPANYKPNCELSRSRSGHSEA ELENGGNKETTPTCTVTLERPRSSSSRYSRLYSNSSDAGGDSSAGSTGRLGSGKYSIN SSSSSGDVPTATFTLRSNRTRRSQAEAPMTTPVESAAAPPAAPPPPPPPPPPTNGHKA GESNGELGAKLNGLSLLSTSPKRNAIYERNQDTTDDAGVCQDSADNADVSTSATFKLN DSSKTAARSGTGSSSSARSVLPPMTPTSNRYWDRDRDSGTSRNSVSTSSALNSSSLKH NSDDGYKSASSSRDEKSEGLCGLRNIGNTCFMNSVIQCLSHTQELTRFLRSHHGSRSS STKDQQILHEFAKLIQEMWTSNVHTVTPMELKRAFSTKHRMYSDYNQQDAQEFLRFFL DSLHSALNSGVKGETLSIDDNLSDNKKADLTWEWYTRHENSLVRDLFVGQLKSTLKCT TCGNTSVTFDPFWDLSVPLPSSSRCKLEACLDLFIREEVLDGDEMPTCAKCKTRRKCT KSFTIQRFPKYLVIHLKRFSETRWSKLSNIVEFPTSDSELNMGSYGANSNSNVHYSLY AISNHMGSTAGGHYVALCKHPASRKWHEFNDNIVSDALSENHLVSSSAYILFYERA" misc_feature <1938..>2480 /gene="Usp2" /note="Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]; Region: UBP12; COG5560" /db_xref="CDD:227847" misc_feature 1956..2924 /gene="Usp2" /note="A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl...; Region: Peptidase_C19R; cd02674" /db_xref="CDD:239139" misc_feature order(1965..1967,1980..1982,2799..2801,2853..2855) /gene="Usp2" /note="active site" /db_xref="CDD:239139" polyA_site 4694 /gene="Usp2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atatcgatag gtcctgaata accatcgatt gtggctccag ctctaatgcg aaagcaccat 61 cgccgtgcgg tcacactggc caaaataaaa taatttccga ttaaagattt tgtctacaac 121 ttaagcagca acggaacggg tcatagatgt agcacatagg catcaattaa gtttaaacta 181 atgctaggca aataattcaa ggataatgta aaataacgcg acgcagacga cgaaaacaga 241 gaaacggaag caagaccaac aggaaccagc cgctcagcaa tacaacgtgc tgcaaccaga 301 actaattaag gacaatctca acttcaacct gaatccgggg tttgatcact gccgctgctg 361 ccactaatat gcgtgtaatt gcgccgcgaa gatcgtcaac gtcagcggcg ggcagcggca 421 gtctctacgg cacatcgtca gccggcacct ccggcgacag cagcaccagc ggcagccacc 481 acatcagcag ctccagcagt accaccaccg gcagtggtgc ggtggaccgg tccagcggag 541 gcgccaccac gaacggttat tcccgctact cgagcagcta cgaccgcggt agcagcctat 601 ccaagtggct gccaacctcg tctggcggct ccagctcgtc cggctacggc agcagctact 661 atcccagctc gtactccacg tactcagcca acagctcctc tagctcgtcg tatgcgccgc 721 gctccagtct gcagaggagc agcgttgggt ccacctcgtc gtcgtcgtat ctgagcggcg 781 gttccggtac cagctcgtcc gcataccgca ccacctcctc gtatctgagc agctccagct 841 atgattcacc tacgtatagc cgatacggat taccgcgcaa atcggcgtcc aaaacaacaa 901 caacaaccaa tggcgacagc ttgaccagat cgtccaacag ggaggactac ggtctgcggc 961 gcggccaaga ttccgcaaag aagccaccga tcagcggagg aagtggtggc cacagcatca 1021 gtaacagtag agacgcccaa ggcgatggca gcaagcggtt gtccagttca tcctcatccc 1081 catcgctggc ccgtttggtg gccacctccg gattggacat atacgaaaag tatagtccgg 1141 ccaactataa acccaactgt gaactgtcac gttccaggtc ggggcattct gaggcggaac 1201 tggagaatgg cggcaacaag gagacgacac ccacctgcac ggtgacgctg gagaggcccc 1261 ggagcagtag cagtcgctac agtcgccttt acagcaatag cagcgatgca ggcggggact 1321 cctcggcggg ctccacggga agattgggtt ccggcaagta ctcgataaac agcagcagca 1381 gcagtggcga tgtgcccacg gccaccttta cgcttcgcag caaccgcaca cgtcgcagcc 1441 aggcggaggc acccatgacc acgccagtgg aatcagcagc agctcctcca gcagctcctc 1501 caccaccacc accaccacct ccacccacaa atggccacaa ggcaggtgaa tcgaatggcg 1561 aactgggagc caaactaaat ggtctatcgc tgctatcgac ttcaccgaaa agaaatgcca 1621 tttatgaacg aaatcaggac accaccgatg atgcaggtgt atgccaggat agtgcggaca 1681 atgccgatgt gagcacctcg gccacgttta agctaaacga cagtagcaag acggcggcaa 1741 gaagcggcac tgggagtagc agcagtgctc ggagcgtgct gccgcccatg acacccacgt 1801 cgaatcgcta ctgggatcgg gatcgggaca gcggcactag ccgcaacagc gttagcacct 1861 cctccgctct caactcgtca tccctgaagc acaattcgga tgatggctac aagagcgcct 1921 cgtcgtcgcg tgatgagaag tctgaaggtc tgtgcggtct gcgaaacatc gggaacactt 1981 gcttcatgaa ctctgtcatc cagtgtctga gccacactca ggagctgaca cgcttcttgc 2041 ggtcgcacca tggctcccgc tcgtcctcca ccaaggatca gcagatactc cacgaatttg 2101 ccaaacttat ccaggagatg tggacgtcga atgtgcacac tgtgacgccc atggaactga 2161 agcgggcctt ctccaccaag caccgcatgt atagcgacta taaccaacag gatgcgcagg 2221 agttcctgcg tttcttcctc gactcgctgc actcggccct aaactcgggc gtcaagggtg 2281 agacgctcag cattgacgat aatctcagtg acaataagaa ggcagacctg acctgggaat 2341 ggtatacgcg gcacgagaac tcgctggtgc gcgacctctt tgtgggtcag cttaaaagca 2401 ccctgaagtg caccacctgc ggcaacacca gcgtcacctt cgatccgttc tgggatctaa 2461 gcgtaccgct gccgtcctcg tcgcgttgta agctggaggc ctgtctcgac ctctttatcc 2521 gtgaggaggt actcgacggc gatgagatgc ccacgtgcgc caagtgcaag acgcggcgga 2581 aatgcaccaa gagcttcacc attcagcgtt tccccaaata tctagttata cacctaaagc 2641 gcttttcgga aacgcgctgg agcaagctgt ccaacatcgt tgagttcccc acatcggaca 2701 gcgagctgaa catgggctcc tatggcgcca actctaactc gaatgtgcat tactcgctct 2761 atgcgatatc caatcatatg ggctcaacag ctggcggtca ttatgtggct ctttgcaagc 2821 atcccgcatc ccgcaagtgg catgagttca atgataatat cgtcagcgat gccttgtccg 2881 aaaaccatct cgtttcatcc agtgcctata ttcttttcta cgagcgtgcg taaggcccaa 2941 ttcgtgccct acggcaaccg tcaggtgcag tgttgatgac gatgtcccag atccagatgt 3001 cccggcgcac tcctcagatc gggatggaaa ccaggatgac catgggagcg ggatgagagc 3061 gagaggaaat ggaacaacca acaaacgaac tctaagaaac gcttcgtaga attgcataca 3121 aacaaattta cttaatttaa ctcaacttaa aagcaaaaca gaactaactc ctaacttaaa 3181 gcagaaacca aaagaaaaac ggaataaaag tgcatacaaa acgaggatta atgtacatat 3241 aaaaaacgaa cttcgatggc ttaacgaaac aagtaaaaga acaataatta aaatccgacg 3301 aaaaacaatg aatctgtgca ataaacaact ttcggcaaac caaaaaacct caagccccag 3361 gataagtgca agagatacta atactaacta gtggcagaat atacttttgt aaggacacac 3421 atagcaatca gcggcagcaa cgatacaatg tttcactatt tctctctttt taagtgttat 3481 ttataaaaac taaattttca atttacatcg ccccactttc cttgtctctt tttcgcctgt 3541 cattctatct ctctcttact cacattggtt tgccgaacga tagatagtgt tctgtggttg 3601 tgtgtaaaaa aaataaacaa aaaatgaaaa gtgggagagg aaaactaatt atatatttaa 3661 aattcgtctt gtgcaatata tttcataaaa atagaaaaac aataactgca ataaatataa 3721 ataaattcaa actaaagacg attaaaacca aacaaaacgc aatcgcacca caaaattcac 3781 actagctaag agaaatggct ttttaacaac taaaaaagaa agtaatatta attaattgat 3841 aacgagcaac aaattgaatg gaagggggtg cgaagtgaag ctgaaatctg cattgtgaaa 3901 acgtacttat gataaatgct agtagtaaaa tttaaaaaat tgaagcgatc agcagcaaca 3961 acaccaaaaa accattgtta ttctttagcc aagacaccaa tcaaccaaca aaaccatcca 4021 gcccatataa aaaagggaaa ctccccaggg cacaaaagac cgttatgaag ttcgtttcaa 4081 atttatgaag ttttttgagt gtttttttgt taggcttggg taaagctacc taaactagtc 4141 ttaaaaacaa aagagtttag tatgagggct actaaacgaa acctgttttt atttgtttga 4201 ttttatgcgt attttgtagt ttaaggctag cggttttcca tcacctcagc aatccctttt 4261 atacttgcta tatatttttt gttgcttatt ttgttttata cctacatata ttatgtaatt 4321 tatttattta ttgtatctat gtaaattata taaagaacac ggacacctac acttacatct 4381 atactctgcg aaacaggatg tgtacataat gtagcttgtt tccgacatcc aaaagcagct 4441 acagaaaaac taaaacaaca tctacacggc accaaaatct aaatgaaaga taataaaaat 4501 atacaagaca cattatttat ttatttgtaa aaaaaaatgc aactcctata ttttttccgg 4561 cttaaatatt agtttcaatt aaaattgttg gatattttac taacgttaaa gaaaaccaaa 4621 aacattaaaa aaaagaaaaa atcaccaaga aaaaaatgca aaaataaacg caaaaataaa 4681 attgaaaaat ttaa