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LOCUS XM_044396178 5705 bp mRNA linear INV 09-DEC-2024 (IntS6), transcript variant X1, mRNA. ACCESSION XM_044396178 VERSION XM_044396178.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396178.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5705 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5705 /gene="IntS6" /note="integrator complex subunit 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108065625" CDS 579..4409 /gene="IntS6" /codon_start=1 /product="integrator complex subunit 6" /protein_id="XP_044252113.1" /db_xref="GeneID:108065625" /translation="MTIILFLVDTSSSMCQKAYVNGVQKTYLDIAKGAVETFLKYRQR TQDCLGDRYMLLTFEEPPANVKAGWKENHATFMNELKNLQSHGLTSMGESLRNAFDLL NLNRMQSGIDTYGQGRCPFYLEPSVIIVITDGGRYSYRNGVHQEIILPLSNQIPGTKF TKEPFRWDQRLFSLVLRMPGNKIDERVDGKVPHDDSPIERMCEVTGGRSYRVRSHYVL NQCIESLVQKVQPGVVLQFEPLLPKEAATAGGASAGTSAISILAAGISGIASGAPEPP PDIVFQPVKKMIYVQKHITQKTFPIGYWPLPEPYWPDSKAITLPPRDAHPKLKILTPA VDEPQLVRSFPVDKYEIEGCPLTLQILNKREMNKCWQVIVTNGMHGFELPFGYLKAAP NFSQVHLYVLAYNYPALLPILHDLIHKYNMSPPNDLMYKFNAYVRSIPPYYCPFLRKA LVNINVPYQLLQFLLPENVDNYLSPTIANQLKHIKNTAKQDQENLCLKVYKQLKQPKP PYRQVETAKLCTGAALRRDLVRHPLLRDTFAKLHAEIEPVENYTIVVPQLTHQSSAKT YRNPFDIPRRDLVEEIARMRETFLRPASLVAKDSGHCLPIAEMGNYQEYLKNKDNPLR EIEPTNVRQHMFGNPYKKDKHMVMVDEADLSDVAPMKSPNGNGPGGAAGSPAAGGSGT SSPGSSPGGGGSSGPGMPGMGGGISGLMLGAGGSGGSSKKLDGTARGRKRKAGPLPRA FEFRRMSTDSRSSCSSAVSSVSTTGSAPGSPIPGATSSVVLGCDSSGGLESGSPNATC FDEDSNSNSSFVSSTSEASSSDSGMSGMSDRLGIGFDFNEEETSDQDTPLNGYVHNFI NGISDDATAGETEAVPGGTLPVASASPVSETTVGTLQVVTAAIPAGAAVAAAASVIPA SNGGEVCASSSSSSISCSSSSSPGVLYVPLNGLTTHAAYSSNLGNLDNNLSSGATGLL SLSKPGSLPLANGYGNAHSSSVISPPSPLSLVPPAPIASSSSSSSSSTSAYFSHNDIN DASEISRILQTCHNGTSGGSGSVAGTTSSNLNGNGSAESAGGAASSAEDHNSLLSFDA LKRNAGLVAGNPHYYWASGLNHHNNNNSSAASVMANNHNHRSSPCKLEVKSSGSGSSC GSSPTHSNNNGGMSSPVAVSSSSSLLLPLSEEQREAARQHNIELRLQIFRDIRRPGRD YSQLLEHMNLVKGDHEMQSDFVEMCIGESLRFRRHRMVSSLQEWWDRKQAAATGGGGG GVASTGAEQAVAKS" misc_feature 588..971 /gene="IntS6" /note="von Willebrand factor type A domain; Region: VWA_2; pfam13519" /db_xref="CDD:463909" misc_feature 4131..4316 /gene="IntS6" /note="INTS6/SAGE1/DDX26B/CT45 C-terminus; Region: INT_SG_DDX_CT_C; pfam15300" /db_xref="CDD:464626" polyA_site 5705 /gene="IntS6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gccacactgc ggaacaaatc aaagcaagtc gaactttgag aacggtcgtg tggtgctcgg 61 aaagcaagga aggaatccga ggaacggaac gaggcgaaca gcgaacaggc gaatcgagaa 121 gaagaagcag caggagcgac gacggcagcg caacaacagt gacgaggcgc cagtgtgcgt 181 gtgcatgcgc ctgtgtgtgt gtgtcgtttc gttgttgttg ttgtttatcc agtccaaatg 241 tcagctgttt cacgcaacat gtaccataaa agcggaacag cgaaacgcag aaaaagagca 301 aatcgatcaa gcccaggaca agaacaacaa aagcaagaga atcagcagaa gcagaagcag 361 caacaacaag cagaggaaga gagctgctaa caacgtaaac aaaaactgag cacacataca 421 cacaaaggga gatagcaacc acaataagaa gaaagagagc gagggaaaga gcaggagaaa 481 gtgcaaccga gctcggtgaa aagagaaaga gagagagaga gagagaaagg aagatcatcg 541 ataacagata aagatatcag agaggaacaa ccaccgccat gaccatcata ctcttcctgg 601 tggacacctc gtcgtccatg tgccagaagg cgtatgtgaa tggggtgcag aagacgtatc 661 tggacattgc caagggcgcc gtggagacgt tcctgaagta tcgccagcgg acgcaggact 721 gcctgggcga tcgctacatg ctgctgacgt tcgaggagcc gccggcgaat gtgaaggccg 781 gctggaagga gaaccatgcg acgttcatga acgagctgaa gaacctgcag agccacggcc 841 tcacctcgat gggtgaatcg ctgcgcaacg ccttcgatct gctcaatctg aaccggatgc 901 agtcgggcat tgatacgtat ggccagggta gatgtccctt ctacctggaa ccctcggtca 961 tcattgtgat tacggacggc ggacggtatt cgtaccggaa cggtgtccac caggagatca 1021 tactgccgct gagcaatcaa ataccgggca caaagttcac caaggagccc tttcgctggg 1081 atcagcgcct cttctcgctg gtcctccgga tgccgggcaa taagattgac gaacgcgtgg 1141 atggcaaggt gccgcacgat gattcgccca tcgagaggat gtgcgaggtg acgggcggcc 1201 gttcgtatcg cgttcgcagt cactatgtgc tgaatcagtg catcgagagt ctggtgcaga 1261 aggttcagcc tggtgtggtg ctgcagtttg agccgctgct gccgaaggag gcggcaaccg 1321 ctggcggcgc atcggcggga acgagcgcca tatccatatt agccgcggga atatcgggaa 1381 tagcatcggg agccccggag ccgccgcccg acattgtctt ccagccggtg aagaagatga 1441 tctatgtgca gaagcacata acgcaaaaga ccttccccat tggctattgg ccgctgccgg 1501 agccttattg gccagattcg aaggcaataa cgctgccgcc gcgcgacgca catcccaagc 1561 tgaagatcct cacgccggcg gtggatgaac cgcagttggt gcgcagtttt cccgtggata 1621 aatacgaaat tgagggatgt ccgctgacgc tgcagatcct caacaagcgc gagatgaaca 1681 agtgctggca ggtgattgtc acgaatggaa tgcacggctt cgagttgccc tttggttatc 1741 tcaaagcggc gcccaatttc tcgcaggtgc atctctacgt tttggcctac aattatcccg 1801 cgctgctgcc cattctgcac gacctcatcc acaagtacaa catgagtccg ccgaacgatt 1861 tgatgtacaa attcaatgcg tatgtaagat ccatacctcc gtattactgc ccgtttttac 1921 gcaaagcttt ggtcaacatc aatgtgccgt atcagctgct gcaatttctg ctgcccgaga 1981 atgtggacaa ctatttgtcg ccgacgatcg ccaatcagct gaagcacatc aagaatacgg 2041 ccaagcagga tcaggagaat ctctgcctga aggtctacaa gcagttgaag cagccaaagc 2101 caccgtatcg ccaggtggag acggctaaac tttgcacggg agccgcgttg cgaagggatt 2161 tggtgcggca tccgctgcta agggatacat ttgctaagct gcatgctgaa attgagcccg 2221 tggagaatta tacgattgtg gtgccgcagc tgacgcatca atcgtcggcg aaaacgtatc 2281 gcaatccctt tgatataccg cgtcgcgatt tggttgagga aatagcgcgg atgcgcgaga 2341 ctttcctgcg acccgcctcg ctggtggcca aggattcggg ccactgcctg cccatcgccg 2401 agatgggcaa ctatcaggag tacctcaaga acaaggacaa tccgctgcgg gagattgagc 2461 cgacaaatgt gcggcagcac atgtttggca atccctacaa gaaggacaag cacatggtga 2521 tggtggacga ggcggatctg agcgatgtgg cgccgatgaa gtcgccgaat ggcaatggac 2581 cgggtggagc agcaggatcg ccagcagcag ggggttcggg aacctcatcg ccgggatctt 2641 cgccaggtgg aggaggttcc agtggtccag ggatgcccgg aatgggtggc ggaatatctg 2701 gattgatgtt aggagccggc ggaagtggag gatcctctaa aaaacttgat ggaacggcga 2761 gggggcgaaa gaggaaggcg ggtccgctgc cgcgtgcctt tgaatttcgt cgcatgtcca 2821 cggattcgcg gtcttcctgc tccagcgcgg tatcctctgt gtccacaacg ggcagtgcgc 2881 cgggttcacc cattccggga gccacgtcat ctgtagtttt gggatgcgat tcctctgggg 2941 gattagaaag tgggagtcca aatgccactt gcttcgatga ggacagcaat agcaacagca 3001 gctttgtgag ctcaacttca gaggcttctt caagtgattc cggaatgtct gggatgtccg 3061 atcgcttggg cattggcttt gatttcaacg aggaggagac tagcgaccag gacacgccgc 3121 tcaatggcta tgtgcataat tttatcaatg gtataagcga tgatgcgaca gcgggggaaa 3181 cggaggcggt tccaggaggc actttgccag ttgcgagtgc ctctccagtt agcgaaacga 3241 cagttggaac tttacaagtt gttacagcag caataccagc aggagcagcc gtagcagcag 3301 cagcatctgt gatcccggcc agcaatggcg gggaagtttg cgccagtagt tccagtagct 3361 ccatcagttg cagctccagt tcctcaccag gagtgctcta tgtgccgctc aacggactaa 3421 ccacccatgc ggcctacagc agcaatctgg gcaatctgga caacaacctg agctctggag 3481 caacgggatt actaagcctt agtaagccgg gttccctgcc cttggccaat ggctatggaa 3541 atgcgcacag ttcatcggtc atctcgccac catctccctt gtctttggtg cctcctgcgc 3601 cgattgccag cagctcaagc agctccagca gctccacttc cgcctacttc agccacaatg 3661 acatcaatga tgcctcggag atctcgcgga tactgcagac gtgtcacaat ggaaccagtg 3721 gaggcagtgg aagcgtagca ggaacaacta gcagcaattt aaatggcaat ggaagcgcag 3781 agagtgcagg aggagcagcc tcctccgccg aagatcacaa ctcgctgcta agtttcgatg 3841 ccttgaaacg aaacgcggga cttgtggcgg ggaatcctca ctattactgg gccagcggac 3901 tcaatcatca caataataac aacagcagtg cagcctctgt gatggccaac aatcacaatc 3961 accgcagtag tccctgcaag ctggaagtca agagcagcgg cagcggttcc agctgcggtt 4021 cctcgccgac gcacagcaac aacaacggcg ggatgagctc accggtggcg gtatcgtcat 4081 catcatcttt actactgccc ctcagcgagg agcaacgcga ggcggccagg cagcacaaca 4141 ttgagctgcg actgcagatc ttccgggata ttcggcgacc tggacgcgac tacagccagc 4201 tgctggagca catgaatctg gtgaagggcg accatgagat gcagtcggat ttcgtggaga 4261 tgtgcatcgg ggaatcgttg cgctttcgca ggcatcgcat ggtttccagc ctgcaggagt 4321 ggtgggatcg caagcaggcg gcggcaactg gaggaggagg aggaggagta gcgagtactg 4381 gagcggagca ggccgtcgcc aagagttaac gatggctcat gtggcaccac tgagcccgcg 4441 gggtcatcca atccatctgt ctgtgatgtc aacgaaatcg aaatcgaaaa cgaaatcgaa 4501 gagcagcctc gtcaatttcc aatatactgt aaataaatgc caggacagcc aggatcaacg 4561 ccacggggat atagccacta tatcgcatac caagcaacaa ccagcaaaat caacaaaatg 4621 cagcaacaat tctaaagcag agaaaacacc acatttttgc gggacgattt cttagtattt 4681 aaaaaaaaag aaaagagttt aggagttttt gtagcagcag gcaagataca tgtaattact 4741 aaatatatat aaatacttaa gctagacgtt agttaatgat aaaacttaaa aaaaaacaaa 4801 aagaaaaaaa tagatttttg tagcagccgt ttaagttgta tttttttttt tacctagtaa 4861 tacctagtaa tacttataca tacatatata aatatatttt tctcttgtac ttctaagaac 4921 ctaggaatta ttttaattag acttttatca aattaagtgt atattgtatg tgtataaaaa 4981 aaaaacgaag agaaagttta ggaaaagctt gagcttattg agcctcacac gttttagcca 5041 atttttgttg ggcctgtttc aataacacac acacttcgct ttgattttag ccaaaacgaa 5101 tagagaacgt aaaaaagaaa agcactacac acacacatat atatataaat atatagtata 5161 tgtatttatt gcctaaatcg ggtcagcgtt tcattatcta aaataaccgt attattatgt 5221 ttcttcggtt tccttcaatc ctcattattt tttttttttt gctcttattt attgtatact 5281 ttatttaata tctatacaaa ttgtaatgtg agcatagcct aaacacacaa taattatttg 5341 aaaggcagac aaaacgataa gcaaaaaaaa aaaacgtacc gtttgttata catatatata 5401 aaaacaagaa aaaagtaata catttttgca ctattttttt acgtgtatgt ttgtatgcat 5461 gacctgtgag taattgagta ataacaacag cagaaaataa aaaaaagatg aaacgtttac 5521 tagtagttag gcggtgggca gtgattttag tactgcttca ggattaaata attatgtaca 5581 atctagagtg tgcgtatcta acaaatttca taagacatca acaacagaaa catcaaaaca 5641 gcagtaaaac aaaccgaaaa caatacgaaa tcaaacgaaa ataaaaagag gagcattgca 5701 ttcaa