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LOCUS XM_044396149 5225 bp mRNA linear INV 09-DEC-2024 homolog scalloped (sd), transcript variant X2, mRNA. ACCESSION XM_044396149 VERSION XM_044396149.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396149.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5225 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5225 /gene="sd" /note="TEA domain transcription factor 1 homolog scalloped; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108056687" CDS 848..2857 /gene="sd" /codon_start=1 /product="protein scalloped isoform X2" /protein_id="XP_044252084.1" /db_xref="GeneID:108056687" /translation="MKNITSSSTCSTGLLQLQNNLSCTELEVAEKAEQQAVGPGTIPS PWTPVNAGPPGALGSADTNGSMVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQSFQ EALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKL REIQAKIKVETNGVSLHLLNEKEQTLQVMSTMTSSQIVSAQAANNLALAASALSAGGG GGVHHARHLNLNLSLHPPLPPPPLPPPPPHPHRHSSSSSSSAAAAAAAAAAAAAASAA LVPRSPSSPQQQHHYHHHHHHSHPNLTHLPHSHMHTHHHQHAAAVAAVYHLQQQQQQQ QQQQLQQQQLQQQQQQQQQQLQQQQQQRANDANGAATTGGDSEATATAPPAPPPPPPP PPLHHPPLYSGQFWQPGLQPSTSQDIKPFAQPPYPAGKTSTAVSGDETGIPPSQLPWE GRAIATHKFRLLEFTAFMEIQRDDMYNRHLFVQLGGKPSFSDPLLETVDIRQIFDKFP EKSGGLKDLYEKGPQNAFYLVKCWADLNTDLTTGSETGDFYGVTSQYESNENVVLVCS TIVCSFGKQVVEKVESEYSRLENNRYVYRIQRSPMCEYMINFIQKLKNLPERYMMNSV LENFTILQVMRARETQETLLCIAYVFEVAAQNSGTTHHIYRLIKE" misc_feature 1109..1312 /gene="sd" /note="TEA domain; Region: TEA; smart00426" /db_xref="CDD:128703" misc_feature 2219..2845 /gene="sd" /note="YAP binding domain; Region: YBD; pfam17725" /db_xref="CDD:435993" polyA_site 5225 /gene="sd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgagagttga ggtttagctg agttgagttg agttggccag gccaagaagc aggcgcaaca 61 accgaacgcg aacgcgagcg cagggaaaca acaagaaaac aacaatccca gtcccaatcc 121 cagcaatacg aatcggacaa cccaacaacc agaccagacc agaccagcta tagtgctata 181 gtgtgttatc gacgctgacg tcggcgtcgt tctttgtatt gattcgaatt tggattcgga 241 ttcagtcgat gagtttctct cgcttctgcg cgttgcgttt ttcgcagtgt ttccgcgatt 301 tttcgttgtc gtcatcgttg tttcgtatcg tttcgtttcg tctcgtctcg tttcgttgtt 361 gtgtgtggtg tgtggtgtat agtgcgccgc ctcctctcat ttcagccccc ttttttcgta 421 cagccgtgag tggctgtaaa agtttccatc ccgtcccaga cgttagctgc tactaagtat 481 aactaagcta tatggtataa taataaaaca gagaaacaaa aaaaccgctc catcgcgtta 541 tcaacggaca tagataataa cacacccaat ataaagtctg aaaaaacagt tactgttaca 601 agcgaataat aataataaga gtgagtagtg agtgccggag tgagtgcctt tgaccagccg 661 agacgacgac ggtacggtac ggttcttgat ggtgacatca gagtctaaat ctagcgcgaa 721 cagattttaa ttccgtgaac tagtagacga cgcacagtca ccgagtaccg agtctacgta 781 cctctcatat cgggcatacc cgtgaaccca accaaccaac ccgtgaaaac gacaagaaac 841 tggctgcatg aaaaacatca ccagctcgag cacttgcagc actgggctgc tgcaattgca 901 gaacaacctg agctgcactg agttggaggt tgcggagaag gcagaacagc aggcagttgg 961 acccggcacc ataccatcac cgtggactcc agtgaatgcc ggtcctccag gtgcccttgg 1021 atcggcagac acaaatggca gcatggtgga tagcaaaaac ctggatgttg gtgatatgag 1081 cgatgacgaa aaggatttat cctccgccga tgccgaaggt gtatggagtc ccgatatcga 1141 acagagcttt caagaggctt tatctatata tccgccgtgc ggacgtagaa aaatcatctt 1201 atccgacgag ggtaaaatgt atggtcgcaa cgaactgatc gcacgatata taaaactgcg 1261 cacaggcaag acgagaacca ggaaacaagt cagctcgcac atccaagtgc tggctagacg 1321 gaaactccgc gagatccagg cgaaaatcaa agtggaaacc aatggtgtgt ccttgcattt 1381 attaaacgag aaagagcaaa cgttgcaggt catgagcaca atgaccagtt cgcaaatcgt 1441 gtccgcccaa gcggccaaca atctggcatt ggctgcctcg gcactatcgg caggtggtgg 1501 tggcggcgtc caccacgcga ggcatctcaa cctcaacctc agtctgcacc ccccactacc 1561 accaccacca ctaccgccac caccacccca tccccataga cactcgtctt cgtcgtcgtc 1621 gtcggcggcg gcagcagctg cagcagcagc agcagcggcg gcggcctcag ccgcgttggt 1681 ccccaggtcg ccgtcgtctc cgcaacagca gcaccactac caccaccacc accaccattc 1741 ccatcccaat ttgacgcacc taccgcatag tcatatgcat acacaccatc accaacatgc 1801 ggcagccgtt gcagcggtct atcatctcca gcagcaacag cagcagcagc agcagcagca 1861 gctgcaacag cagcaactgc aacagcagca acagcaacag cagcagcaac tgcaacagca 1921 gcagcaacag cgggcgaacg atgcgaacgg cgctgcaaca actggcggcg attcggaggc 1981 aacagcgacg gcaccgcccg ctccgccacc ccctccgccg ccgccgccgc tgcaccaccc 2041 gccgttgtat tctggccaat tctggcaacc tggactacag ccaagcacgt cccaagacat 2101 caagcccttc gcccagccac cctatcccgc cggcaaaacg tcgacggcgg tgtccgggga 2161 cgagactgga attccgccct cacaattgcc ctgggaaggt cgagccattg ccacgcacaa 2221 attccgccta ctcgagttta cggcgttcat ggaaatccag agagatgata tgtataaccg 2281 tcaccttttc gttcaactcg gcggtaagcc atccttttcc gatccactgc ttgagaccgt 2341 tgatatacga caaatattcg acaagtttcc ggaaaagtcg gggggcctca aagatctcta 2401 cgaaaagggt ccacagaatg cgttttacct agttaaatgc tgggcggacc tgaataccga 2461 cctaacgacc ggcagcgaaa cgggtgattt ctatggcgta accagccaat acgaaagcaa 2521 cgagaatgtc gtgctcgtgt gctccacgat cgtttgctct tttggcaaac aggtggtgga 2581 gaaggtggaa agcgagtact cgcggctgga gaacaatcgc tatgtgtacc gcatccagcg 2641 gtctccgatg tgcgagtaca tgatcaattt cattcagaag ctgaagaacc taccggaacg 2701 ctatatgatg aacagtgtgc tggaaaactt tacaatattg caagtaatga gagcccgcga 2761 aacgcaggag acactgctgt gcatagccta tgtgtttgag gtagcggccc agaacagcgg 2821 taccacccac catatatacc ggttaattaa ggaatagcaa aagctgcatg gagcagagcc 2881 cgacctgtct gcgaatcccg tcatcaacac acaagttcac aaatatatca gcgacgataa 2941 tagtatcaat gcgaatgcca agaattgcga gggtaaggcg agtcaagaca acaccaagag 3001 tgccagaagc aacatcaaca gcagcagcaa cagcagcaac aacagcagca gcaacaacag 3061 cagcagcaac agcaatatta agaataggaa tctatctgct acacttatta agcaatcact 3121 tagctcgccg aaccaacatc ataacgaaat cgatgccttg actgcacttc aagtggagga 3181 ggttatatat acacagtcac aaggaaatac cagttaccag ttggactccg aatcgagcaa 3241 caacaataac gtaccagagc caacaacact ccagcagcaa cagcaacata ccgcctatga 3301 ggatcgtcaa gtagtccttc caccatacga cctatgcatc ggcaacaagc aaccgcaacc 3361 gcaacaggaa ctggaactcg aactggagca gaagcagctg gagagcacta gctatgagca 3421 gttcctcaag ctgtccgctc atgaatattc gcaatcagaa ccaagaagct ccgcagctgc 3481 tctaaatctc agcagtattg gcgaaaagga atcagcagtg ggaggtgaat ccaagccgga 3541 acttgaagat cacccagaat ttcggacaga ggacatccga accactgccg attgtgggat 3601 catcagtaac aaaggccgtg agccgtgagc gccatataaa accagcagcc tttaagcaag 3661 gttgaggcta attttaaggg ctagaaatat aaggaacgac accatcagaa ctttttgttt 3721 tccaccccca aacgaaaaac gaaaaaaaag gagcctcaaa aacgatcgat tggtgtggtg 3781 ttcagtatcg aaatcagatt tttatttgtg caaaataaaa agtgtatcat attttatgtt 3841 acaataatta tttgaaaggc tctttagttc agcgtagagt gctttctgta aaattgtact 3901 atacatgcat aaaaaaaaat acatttaaat gatctcaaag ttacttaaaa catatttttt 3961 gtgtataatt ttttttatga aaactttaca aaatcctgaa aatgaaaaaa aaaaattaaa 4021 agaaaagaga agagatgatc gtgcgctgat ttttaaaaaa taggatagta agagtatata 4081 ttgactaata tgtttgaaac aaagaacgcc gcgaaagaaa cagatacaat atagttttcc 4141 gaattaccat tagatatgca tgattatgtg caaatagagt taaggtactt ttttttttat 4201 ataaaagctt ttgcataggg ctacaaaatg tatagaaata atatgttagt tctattttat 4261 ttgaagcttg atctttcatt tagcaagagt gcagtgcaga ggaaagaaag ggagagcaaa 4321 ggagcggaat ggaatagaaa gggaaagata ggatagctgg ctggagtgga aaccgatttg 4381 gagctagata aggtaacttc gagaacttaa gatcaaagta tattacaatt tgttaaccga 4441 aatcgaaatc gaaatcctgg caagaggcga gacgcgatga ggagggaaaa ggatatagaa 4501 tcgagcgaaa gatgttgtgt gttacgcgat ggtttttgtc tatccattcg tattgtagtg 4561 gcaaaatgga tatgtaagta attgaattaa gcatgtgtcg aatgatccac cgttaattaa 4621 attattaatt actgatttaa attcattagt attaaaaatg cccatattat ataatataac 4681 aagtaaaact ggtatgtaat tagccatttt ctgcatccac cgaagacaag ctcgaactcg 4741 aacacatcta aaatgtccaa attgtaagaa attatacata tatgcagaag aagtaacata 4801 aagatttatt ttccgatcta aataaaaaaa caaaaataaa agtaaaagta atgatagaga 4861 taacgataac gaaaatgtat tctgaatgta aaacagccta attaaaatta tcgtaataat 4921 aataatataa ttacacatat atatttacca aataatataa catatttatg ctctaaagta 4981 tatacgacta caacaaatac gcattttttg ttcgtagata agataagtta atgtgaaaga 5041 aataatatga ttgcatacta aaaagttcca caacaatgac agttgaattt tatttcgaga 5101 gctaagaaaa ccagcaacaa aaatatttta aagctataga cttaaaaata ttattattaa 5161 agatcactaa tgaatatggt tggcaaaata taggtggaga gtaaatataa taaattcaaa 5221 tttaa