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LOCUS XM_044396138 2206 bp mRNA linear INV 09-DEC-2024 transcript variant X3, mRNA. ACCESSION XM_044396138 VERSION XM_044396138.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396138.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2206 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2206 /gene="HisRS" /note="histidine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 55 Proteins" /db_xref="GeneID:108060979" CDS 194..1915 /gene="HisRS" /codon_start=1 /product="histidine--tRNA ligase, cytoplasmic isoform X3" /protein_id="XP_044252073.1" /db_xref="GeneID:108060979" /translation="MSDTREQILEQIKVQGDLVRQLKAAKESKEKTAPSGGGRANSSG VPAQQQQRQQQQQEQPQKQQQAQEQQQQHEQLLQIDEEVARLLALKAKLGGDAPPTNQ KFTLKTPKGTRDYGPQQMTLRQGVLDKIIQVFKRHGGEAIDTPVFELKEVLTGKYGED SKLIYDLKDQGGEILSMRYDLTVPLARYLAMNKISSIKRYHIAKVYRRDNPAMTKGRY REFYQCDFDIAGTYDPMLADAECVKIVSEILDTLDIGDYVIKLNHRQLLDGMFQACGV PAESFRTICSAVDKLDKSPWADVRKEMVEEKGLDEAAADRIGEYVRLSGGAELVEQLL ADEKLKAVPNAVKGLEGMQLLLKYCSIFGLEKRVSFDLSLARGLDYYTGVIYEGVLKG ESAIASPASPAKTSQQNGEPGSPNEPATVGSVAGGGRYDNLVGMFDPRGKAVPCVGVS IGVERIFSVLEARAAAGGLKLRTSDVEVYVASAHKGLHEQRLKVLNQLWEAGVKAEHS YKLNPKLLVQLQHCEEHQIPLVVVLGDAELAQGLVKLREVTTRQESNVKLEDLAAEIR RRQQAAA" misc_feature 209..484 /gene="HisRS" /note="S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic...; Region: S15_NS1_EPRS_RNA-bind; cl00349" /db_xref="CDD:469733" misc_feature order(224..226,245..247,266..268,281..283,455..457, 467..469) /gene="HisRS" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:238361" misc_feature <512..1897 /gene="HisRS" /note="Histidyl-tRNA synthetase; Region: PLN02972" /db_xref="CDD:215525" polyA_site 2206 /gene="HisRS" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tacttctcac taacacggtc acactgacca ccgcgtgcag tgaatttttt ttggccagca 61 gcgcagaaaa agcagctgaa agctggaaaa atacatcaca aaccgccgtg tcaaagacga 121 ttgaaacaat tgaaacgcgc gcccgccttt tgagaggatt gccaaccgat tgccgttgtt 181 gtttctgggg aatatgagtg atacgcgtga gcagattctg gagcaaatca aagtgcaagg 241 cgatctcgtc cgtcagttga aagcagcgaa ggagtcgaag gagaagacgg cgccctctgg 301 cggcgggcgc gccaactcgt ccggcgtgcc agcccaacaa caacaacgac aacagcaaca 361 acaagaacag ccacaaaaac aacaacaagc acaagaacaa caacagcaac atgagcaact 421 gctgcagatc gatgaggagg tcgcccgcct tctggccctc aaggccaagt tgggcggaga 481 tgccccaccc accaaccaga agttcacgct aaagacgccc aagggcaccc gggactatgg 541 cccccagcag atgaccctgc gccagggcgt cctggacaag atcatccagg tgttcaagcg 601 ccacggcggc gaggccatcg atacgcccgt cttcgagctg aaggaagtgc taacgggcaa 661 gtacggcgag gactcgaagc tgatctacga cctgaaggac cagggcggcg agattctatc 721 gatgaggtac gacctgaccg ttccgctggc ccgctacctg gcgatgaaca agatctcgag 781 catcaagcgc taccacatcg ccaaggtcta tcgccgcgac aatccggcga tgaccaaggg 841 tcgctacagg gagttctacc agtgcgactt cgacattgcc ggcacctacg atcccatgct 901 ggcggatgcc gagtgcgtga agattgtgtc ggagattctg gacaccctgg acattgggga 961 ctatgtgata aagctgaatc accgccaatt attggacggc atgttccagg cgtgcggagt 1021 gccggccgag agtttccgca ccatctgctc ggcggtggat aaactggaca agtctccctg 1081 ggcggatgtg cgcaaggaga tggtggagga gaagggcctg gacgaggcgg cagcggatcg 1141 cattggcgag tacgtgcgtc tgagtggcgg tgccgagctg gtggagcagc tgctggccga 1201 cgagaagcta aaggctgtgc ccaatgccgt gaagggtctg gagggcatgc agctgctgct 1261 gaagtactgc tcgatctttg gcctcgagaa gcgcgttagc ttcgatctga gcctggcccg 1321 tggtctggac tactacaccg gtgtgatcta cgagggtgtg ctgaagggcg agtccgcaat 1381 tgcttcgcct gcatctcctg cgaagacatc gcagcagaac ggagagccgg gatcaccgaa 1441 tgagccggcc accgtgggtt ccgtggccgg tggcggtcgc tacgacaatc tggtgggcat 1501 gttcgatccg cgcggcaagg ctgtgccctg cgtgggcgtc tccattggcg tggagcgcat 1561 cttctcggtg ctggaggcgc gggcagctgc cggcggccta aagctgcgca ccagcgacgt 1621 cgaggtctac gtggcctcgg cccacaaggg actgcacgag cagcgactga aggtgctcaa 1681 ccagctgtgg gaagcgggcg tcaaggcgga gcactcttac aagctgaatc ccaagctgct 1741 ggtgcagctg cagcactgcg aggagcacca gattcctttg gtcgtcgtcc tcggcgacgc 1801 ggaattggcc cagggattgg tgaagctgcg cgaggtgacc acgcgccagg agagcaatgt 1861 caagctggag gatttggctg ccgagattcg gcgacgacag caggcggccg cctaggctgt 1921 acaataattt tcttaaacaa tttttttttg caactgatat taccgagata ccgcaaccgc 1981 aaccgctact gctcctaatt tatgaaccaa tcatccagca tcgaagtata gatttttttt 2041 cctatttgta cgttttgtat tttttggtgt cctggccgga ggcgccgtgt gctactatgc 2101 ttaggtctac agtgtaacca taggaataag tgcggacaac ttataccaaa atgaacgcta 2161 aaaagaaaca aataaacgct taggcgactc gcatttaagc cggaaa