Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_044396127 6130 bp mRNA linear INV 09-DEC-2024 protein-like (LOC108056390), mRNA. ACCESSION XM_044396127 VERSION XM_044396127.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396127.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6130 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6130 /gene="LOC108056390" /note="polyhomeotic-proximal chromatin protein-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108056390" CDS 839..5545 /gene="LOC108056390" /codon_start=1 /product="polyhomeotic-proximal chromatin protein-like" /protein_id="XP_044252062.2" /db_xref="GeneID:108056390" /translation="MDRRALKFMQKRATDSDTTTTTANTTASPDTLPLKDNSNIREKP LHHHNNNSQHTHTHSHPQQQQQQQQQQAGGKQLERPLKCLETLAQKAGITFDEKYDVA SPPHPGIAQQQATPGSGSATGAGSATGTGSAGTVTPTSHRHGTPPTARRQTHTPNTPG RPSAPSTPNTHNQTHSLARHTGLTLEKAQNPGQQVATTTTVPLQISPEQLQQFYASNP YAIQVKQEFPTHTTSASGTELKHAANILDVQQQLQLQQQLSEASGGGGSGGGGAGGAP SPAANSQQSQQQQQHSTAISTMSPMQLAAANGDWSQGRTVQLMQPSTSFLYPQMIVSG NLLHPGGLGQQPIQVITAGKPFQGNGPQMLTTTTQNAKQMIGGQAGFAGGNYTTCIPS NHNQSPQTLLISPVNVISHSPQQQQNLLQSMAAAAQQQQLTQQQQQQLSQQQQQQQLT QQQQQQQQQLTAALAKVGVDAQGKLAQKVVQKVTTTSSTVQAATGPGSAGTTQAQQVQ QVQQQQQQTTQTTQQCVQVSQSTLPVGVGAQSVQSVQTAQLLNAGQAQQMQIPWFWQN AAGLQPFGSNQIILRNQPDGTQGMFIQQQPTTQTLQTQQNQIIQCNVTQTPTKARTQL DALAPKQQQQQGGTTNQTQQQQLAVATAQLQQQQQQLTAAALQRPGAPIMPHNGTQVR PASSVSTQTAQNQSLLKAKMRNKQQPVRPALPTLKTENGQVGGQNKVVGHLTTVQQQQ QATNLQQVVNAAGNKMVVMSTTGTPITLQNGQTLHSATTGVDKQQQQLQLIQKQQFLQ QQMFQQQIAAIQMQQQAAVQAQQQQQQQQVSQQQQVNAQQQQAVAQQQQAVAQAQQQQ REQQQQVAQAQAQQQQALANATQQILQVAPNQFITSHQQQQQQQLHNQLIQQQLQQQA QAQAQVQAQVQAQAQQQQQQREQQQQQNIIQQIVVQQSGGASAQQQQQQAQQQSGQLQ LSSVPFSVSSTTTPAGIATSSALQAALSASGAIFQTAKPVTCSSSSLPTSSVVTITNQ SSTPLVTSSTVASMQAQAQAAQIHQQQQQLISATIAAASQQQQQQQQGPPSLTPTTPS PTTNPILAMTSMMNATVGHLSTAPPVTVSVTSTAVTPSPGQLVTLSSASSGGGGGGSF PSTPSKETPSRVPTATLVPIDSPMTPVSGQDSCSTPKSSTPANVSASVEASSSTSEAL PNGEASDRASTPSKAATTPTSKQSNAVQPTSSCSTPTSASGKEEPKVATSVTSTSTTS CTTVTTTTTTSNSVGAKDLPKAMIKPSVLTHVIDGFIIQEANEPFPVTRQRYADKDVS DEPPKKKAAMQEDMKPTGIASAPASDMVACEQCGKLEHKAKLKRKRYCSPGCARQAKN GIGGVGTGETNGLGTGGIVGVDAMALVDKLDEAMAVEKMQTEAMQSMSESLSAASTEV PLPVVAAVPASSPLAIPLGSPLPVAFPTLAPLPAVTPAAGPTSSSVNGSDRPPISSWS VEEVSNFIRELPGCQDYVDDFVQQEIDGQALLLLKENHLVHAMGMKLGPALKIVAKVE SMKEVPPPGDAKDGGA" misc_feature 5300..5506 /gene="LOC108056390" /note="SAM domain of Ph (polyhomeotic) proteins of Polycomb group; Region: SAM_Ph1,2,3; cd09577" /db_xref="CDD:188976" misc_feature order(5354..5359,5459..5464,5471..5476,5483..5485) /gene="LOC108056390" /note="oligomer interface EH [polypeptide binding]; other site" /db_xref="CDD:188976" misc_feature order(5387..5401,5405..5410,5417..5422,5432..5434, 5447..5449) /gene="LOC108056390" /note="oligomer interface ML [polypeptide binding]; other site" /db_xref="CDD:188976" ORIGIN 1 ttcatttcga aactaaactt ggcggcgtgc ggttcttgcg ctctgctccg cgttcgtgtt 61 gccttcgtgt tgtattatcg tacttgtatt gagaacgggg aaattctcgc gccgacgcga 121 cgcacacact tgatacccta ggaattaaat tattttttga aaagtgctaa cggtgctgga 181 aactagtggg cccggatgaa aaagtgatgc cgcgccacag tggaaaccct tgctggcgaa 241 ccgtcgctgg cgacgtaggc agtgcaataa aaacaagcgt ctagagctgt tgccgctgaa 301 ttgtgatatt ttttatgtaa gatcgcgtgc acaggtgctt agtcgcggtt acactgagac 361 aaaaaagtga cgctgccagc ggggaaaacg gagagaaagt ggaagtggag tgtgagtgga 421 gtttgtacta attactactg cccgtgcacg aaaaacactc atttacacgc aagcacacac 481 acacactgga acacacacac acaccgggac agtgggacgt tcgtcggatt ttcgtattcg 541 tttctgtgta cattttgttg tcttgcgttc cacgttacat atctgtttgt tgttgcctgc 601 tgtatgttta tatttatatt tattgcctcc ccatatatat atgtacatat atgtgtgttt 661 gttaatgttc aatacaaaaa ctacgaagag aagagcaact aaaggccaag ccaaaaagaa 721 agcgcaatgc caataaaaac aacaacaaca ccgaccgccg ctgaaaacaa aaacaaaacg 781 ccaccgccga cgcatgcata cctttaattt attacacata ttgtttttat tttgaataat 841 ggatcgtcgt gcattgaagt ttatgcaaaa aagagcgacc gacagcgaca ccaccaccac 901 aacagcaaac accacagcat cccccgacac tctgcccctg aaagacaact ccaacatccg 961 cgagaaaccc ctgcaccacc acaacaacaa ctcgcagcac acacacacac actcgcatcc 1021 gcagcagcag cagcagcaac aacagcagca ggccggcggc aagcagcttg agcggccact 1081 gaagtgcctg gaaactctcg cccagaaggc ggggatcacc ttcgacgaga aatacgatgt 1141 ggccagtccc ccgcatcccg gcattgccca gcagcaggcg actccaggat caggatcagc 1201 aacaggagca ggatcagcaa caggaacggg atcagcaggc acagtcaccc ccacaagcca 1261 tcgccacgga actccgccca ccgcccgcag gcagacgcac accccaaaca caccgggcag 1321 gccgagtgca cccagtacac ccaacaccca caaccaaacc cactcccttg cccgccacac 1381 cggccttacg ctggagaagg cgcagaatcc cggccagcag gtggccacca ccaccacggt 1441 gccgctgcag atctcaccgg agcaactgca gcagttctac gcgagcaatc cctacgccat 1501 ccaggtgaag caggagtttc ccacgcacac gacgagtgcc agtggaaccg agctgaagca 1561 tgcagccaac atcctggatg tccagcagca gttgcaactg cagcagcagc tctcggaggc 1621 cagcggagga ggaggctcgg gcggcggcgg cgctggcggt gcacctagtc cagcagccaa 1681 ctcccagcaa agccagcagc agcagcagca ctccaccgcc atcagcacca tgtcaccgat 1741 gcagttggca gctgccaacg gagattggtc gcagggcagg acggtgcagc tgatgcagcc 1801 ctccaccagc ttcctgtacc cgcagatgat tgtgtccggc aatctgctgc accccggcgg 1861 cctcggccag cagcccattc aggtgatcac cgccggcaag ccgttccagg gcaacggccc 1921 ccagatgctc accaccacga cgcagaacgc caagcagatg atcggtggcc aggcgggatt 1981 cgccggcggc aactacacca cctgcattcc ctcgaaccac aaccagtcgc cccagacgct 2041 gctcatctcg ccggtgaatg tcatctccca ctcgccgcag cagcagcaga acctgctgca 2101 gtccatggca gccgcagcgc agcagcagca actcacgcag cagcagcagc aacagctcag 2161 ccagcagcaa cagcagcagc agctcaccca gcagcagcaa cagcagcagc aacagctgac 2221 ggctgccctg gccaaggtgg gggtggatgc gcagggcaag ctggcccaga aggtggtcca 2281 gaaggtgacc accaccagca gcacggttca ggcggcgacg ggaccaggat ccgctgggac 2341 gacccaggcc cagcaagtgc agcaggtcca acagcagcag cagcagacca cccaaaccac 2401 ccagcagtgc gtccaggtct cgcagtcgac gttgccagtc ggagtgggcg cccagtctgt 2461 tcagtctgtc cagactgccc agctcctcaa cgccggccag gcgcagcaga tgcagatccc 2521 ctggttctgg cagaatgcgg caggactgca gcccttcggc tccaaccaga tcatcctgcg 2581 aaaccagccg gacggaaccc agggcatgtt tatccagcag cagccgacga cccagaccct 2641 gcagacgcag cagaaccaga tcatccagtg caatgtgacc cagaccccca ccaaggcacg 2701 cacccagctc gacgcactgg ctcctaagca gcagcagcag cagggaggca ccaccaacca 2761 gacacagcag cagcagctgg ctgtggccac tgcccagctg cagcagcagc agcaacaact 2821 cacggcagca gctctgcagc gaccgggggc cccgatcatg ccccacaatg gaacccaagt 2881 gcgtccggcc agctccgtgt ccacacagac ggcccagaac cagagtctgc tgaaggcgaa 2941 gatgcgcaac aagcagcagc cggtgcgacc cgcactgccc accctgaaga cggagaatgg 3001 tcaggtcggg ggccagaaca aggtggtggg tcacctgacc accgtgcagc agcagcagca 3061 ggcgacgaat ctgcagcagg tggtcaatgc ggcgggcaac aaaatggttg tgatgagcac 3121 gacgggcact cccatcaccc tgcagaatgg ccaaacactt cactcggcca ccacgggagt 3181 ggacaagcag caacagcagc tgcagctaat ccagaagcag cagttcctgc agcagcagat 3241 gttccagcag cagatcgccg ccatccagat gcagcagcag gcggcagtgc aggcgcagca 3301 gcaacagcag cagcaacaag tctcccagca gcagcaggtg aacgcccagc aacagcaagc 3361 ggtggcgcag cagcagcagg cggtggcgca ggcccagcag cagcagaggg agcagcaaca 3421 gcaggtcgcc caggctcagg cgcagcagca gcaggcactc gccaacgcca ctcagcagat 3481 cctccaggtg gcgcccaacc agttcatcac ctcccaccag cagcagcagc agcagcagct 3541 ccacaaccaa ctgatccagc agcagctgca gcaacaggcg caggcgcagg cacaggttca 3601 agcccaggtg caggcccagg cgcagcagca acaacagcag cgggagcagc agcagcagca 3661 gaacatcatc cagcagattg tggtgcagca gtcgggcgga gccagcgccc agcagcagca 3721 gcagcaggca caacagcaat ctggacagct gcagctgagc agcgtgccct tctcggtttc 3781 ctcgacgacg acgccagccg gaatagccac ctccagtgcc ctgcaggcag ctctctccgc 3841 ctcgggcgcc atcttccaaa cagccaagcc cgtcacgtgc agctcctcct ccctgcccac 3901 cagcagtgtg gtcaccatca ccaaccagag cagcactccc ctggtcacca gcagcacggt 3961 ggccagcatg caggcacagg ctcaagctgc tcagatccac cagcagcagc agcagctgat 4021 cagcgccacc attgcagcag catctcaaca gcagcagcag cagcaacagg gacccccttc 4081 actgacgccc accacgccct cacccaccac caatcccatt ctggccatga cctcgatgat 4141 gaatgccacg gtgggccacc tgtctaccgc tccgcccgtg actgtttctg tgaccagcac 4201 cgctgtcact ccgtcgccgg gtcagctggt cacgctgagc agtgccagca gcggaggagg 4261 aggaggagga agctttccca gcacgccctc caaggagaca ccttcgagag tgcccaccgc 4321 caccctggtg cccattgatt cgcccatgac gcctgtttcg ggccaggaca gctgcagcac 4381 acccaagtcc tccactcccg ccaatgtcag tgcgtccgtg gaggccagta gttccacgag 4441 tgaggctctg cccaacgggg aagcctcgga tcgggcctcc acgccttcga aggccgccac 4501 cactcccact agtaaacaga gcaatgcggt gcagccaacg agcagctgct ccactcccac 4561 cagtgccagt ggaaaggaag agcccaaggt ggcgacttct gttacttcca cttcaacgac 4621 gagctgcacg actgtcacca caactaccac gacgagcaac agcgtgggag ccaaggatct 4681 gccgaaggcg atgataaagc caagtgtatt gacccatgtc atcgatggtt tcatcatcca 4741 ggaggccaat gaaccgttcc ccgtcaccag acaacggtat gcggacaagg acgtcagcga 4801 tgagccgcca aagaaaaagg cagccatgca ggaggacatg aagccaactg gaatagcatc 4861 tgctccagcc tcggacatgg tggcctgcga gcagtgcggc aagctggagc acaaagcgaa 4921 gctcaagcga aagcgctact gttcgccggg atgcgccaga caggcgaaga acggcatcgg 4981 gggagtcgga acaggagaga ccaacggtct gggaaccggc ggaatcgttg gagtggacgc 5041 catggcattg gtggacaaac tggacgaggc tatggctgtg gagaagatgc agacagaggc 5101 catgcagtcc atgtcggaat ctctttcagc agcttcaacg gaggtgccac tgccagtggt 5161 ggctgccgtt ccagcctctt ctcccctcgc aatacccctg ggatcgccat tgccagttgc 5221 atttcccacc ctggcaccac tgcctgcagt cactcccgct gcggggccca cgtcttcgag 5281 tgtaaatgga tcggatcgcc cgcccattag cagctggagt gtggaggagg tcagcaactt 5341 catccgagaa ctgcccgggt gtcaggacta cgtggacgac tttgttcagc aagagatcga 5401 cggacaggcg ctgctgctgc tcaaggagaa ccatctggtg cacgccatgg gcatgaagct 5461 gggcccagcc ctcaagattg tggccaaggt ggagtccatg aaggaggttc cgccgcctgg 5521 cgatgcgaag gatggaggag cttagtagga aacagcttga acttcgcgtg gagccgcaaa 5581 tgatgatctc ctaactggtc caaccgtgtc tgtcgtgccg ggtgaatctg attcaatcgg 5641 tcaggcgaag agggcgcgaa tccacttgta aaatcaatac cagcaccagg tccaaaaccc 5701 atcaaccttg taaatatttc caaattctct catgctagga tatttattta accataaaaa 5761 caaccgacag tcagataacg aatggaatta cttaaactaa gtataagcaa taaataatgt 5821 tctttaattg agctgccagc caagtgaaat cgatagaatt ctacaattaa acattagttt 5881 agagaataac actaaacgtc atggatcgtt ttttaagtat tttaaactaa gcaatcatat 5941 tttccactaa gattgtacta gcaactaaaa aaatttgaac tttcgaaaga aatgatataa 6001 catctaaatg tgaatttaaa ctttttgcta accaattttt aaatgcctag acttaagcct 6061 atttttttca atattatttt tttttgctat tgctgaacaa aataagaaat gcactgtaaa 6121 gtgcttaata