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LOCUS XM_044396101 3478 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_044396101 VERSION XM_044396101.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044396101.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3478 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3478 /gene="Muc11A" /note="Mucin 11A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108059092" CDS 33..3281 /gene="Muc11A" /codon_start=1 /product="mucin-1" /protein_id="XP_044252036.1" /db_xref="GeneID:108059092" /translation="MTTNRSTRLLVLLVLTSLVASHQANAAAVGLKCGGKSAVCVGPL SYQQCVDDLTSGPVVPCELNTRCVTDGLEICVPVKSAAEAPTASVAKMVTITDSPVSE SAPLVEGSSSAAGAEISTEGPSSASSASPAETPAPVETTQAPVETTQAPAETTTAAIE TTTGSETESTIPGDTTPVDTTLAPGSDITNTPIEPNTPVAPEGTTVAPGEDPNAPAGT TLAPGEADPNTPIDPNAPLDPNAPEGSTNEPGLTDPTTPAETTAAPGSPSEGSTAAPG TPADVTTAAPGAPADVTTAAPGSTAAPGSPAEGSTAAPGSPAEGSTAAPGSPAEGSTA APGSPAEGSTAAPGAPADVTTPAPGAPADVSTAAPGSPAEGSTSAPGAPADVTTPAPG APADVTTPAPGSPADVSTAAPGSPAEGSTAAPGSPAEGSTAAPGSPAEGSTAAPGSPA EGSTAAPGSPAEGSTAAPGAPADVTTPAPGAPADVTTPAPGSPADVSTAAPGSPAEGS TAAPGSPAEGSTAAPGSPAEGSTAAPGSPAEGSTAAPGAPADVSTAAPGSPAEGSTAA PGAPADVTTPAPGSPADVSTAAPGSPAEGSTAAPGSPAEGSPAAPGSPADVTTAAPGT PAVPNVPAGGAPADSNVPAGGAPADSNVPAGGAPAGSNVPAGGAPADSNVPAGGAPAG SNVPAGGAPADSNVPAGGAPADSNVSAGGAPAGSNVPAGGAPAGSNVPAGGAPAGSNV PAGGAPADSNVPAGGAPAGSNVPAGDAPAGSNVLAGGAPAGSNSPAGAPVVPNSPLSP PSGSVIPSIPVLPGGGGSWPWQVRPNIPILPPNWRPQLPGQEGSGAGAPAPGNGLNNG SANPPQRPLPFWPNWQNWVNSWRPTKPVTTTEAPAQNPEKPQNPETAESVEQAAPVPP AGGAASNENASVEEGNKASGEKSKDKPKSGEDQSKEQEQKKPSSEEKDKDKDSKEKKD KDSQEKKDKSKDSKEEKDNESQKDNENEDELSSKEKKQYVKDLIKKLKKGDECDEDDV YPDVRDCRKYYRCEVKRSGKHKFAHLRCDKKERYDWQAKTCLPKDEARCLEK" misc_feature <606..2042 /gene="Muc11A" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature <1470..2813 /gene="Muc11A" /note="DNA polymerase III subunits gamma and tau; Validated; Region: PRK07764" /db_xref="CDD:236090" polyA_site 3478 /gene="Muc11A" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgaacctaa aacacaccca acgacgacga cgatgacaac gaaccgatcc accagacttc 61 tggtgttgct agtgttgacc tccctggtgg ccagccatca ggcgaatgcc gccgccgtgg 121 gactgaagtg cggcggcaag agcgccgtct gcgtgggacc cctctcctac cagcagtgcg 181 tggacgacct gacctccggt ccggtggtgc cctgcgaact gaacacccgc tgcgtcaccg 241 acggcctcga gatctgcgtg ccggtcaagt cggccgccga ggcgccgacg gcatccgttg 301 ccaagatggt caccatcacc gacagccccg tcagcgagtc tgctccgctg gtggagggca 361 gttccagcgc agccggcgca gagatctcca ccgagggacc aagttcggca tccagcgctt 421 ctcccgcgga gactcctgct ccggttgaga ccacccaggc tccagtcgag accacccagg 481 ctcccgctga gacgaccacc gctgccatcg agaccacaac cggatcagag acggagtcga 541 cgattcccgg cgacacaaca cccgtggaca ccaccttggc acctggatcg gacatcacta 601 acacacccat tgaacccaac acccccgtgg cacccgaagg caccactgtg gctccaggag 661 aagatcccaa cgctcccgcg ggaactaccc ttgctcccgg tgaagctgac ccgaacacgc 721 caatcgatcc caatgcccca ctagacccga atgcacccga aggatctact aacgagcccg 781 gtttaacgga ccctaccact ccggctgaaa caaccgctgc tcctggatct ccttctgaag 841 gatcaaccgc agctcccggc actcctgctg atgtaaccac cgctgctcct ggtgctcctg 901 ctgatgtaac caccgctgct cctggatcta ccgctgctcc tggttctcct gctgaaggat 961 ctaccgctgc tcctggttct cctgctgaag gatctaccgc tgctcctggt tctcctgctg 1021 aaggatctac cgctgctcct ggttctcctg ctgaaggatc taccgctgct cctggtgctc 1081 ctgctgatgt aaccacccct gctcctggtg ctcctgctga tgtatccacc gccgctcctg 1141 gttctcctgc tgaaggatct acctctgctc ctggtgctcc tgctgatgta accacccctg 1201 ctcctggtgc tcctgctgat gtaaccaccc ctgctcctgg ttctcctgct gatgtatcaa 1261 ccgctgctcc tggttctcct gctgaaggat ctaccgctgc tcctggttct cctgctgaag 1321 gatccaccgc tgctcctggt tctcctgctg aaggatctac cgctgctcct ggttctcctg 1381 ctgaaggatc taccgctgct cctggttctc ctgctgaagg atctaccgct gctcctggtg 1441 ctcctgctga tgtaaccacc cctgctcctg gtgctcctgc tgatgtaacc acccctgctc 1501 ctggttctcc tgctgatgta tcaaccgctg ctcctggttc tcctgctgaa ggatctaccg 1561 ctgctcctgg ttctcctgct gaaggatcta ccgctgctcc tggttctcct gctgaaggat 1621 ctaccgctgc tcctggttct cctgctgaag gatctaccgc tgctcctggt gctcctgctg 1681 atgtatccac cgccgctcct ggttctcctg ctgaaggatc taccgctgct cctggtgctc 1741 ctgctgatgt aaccacccct gctcctggtt ctcctgctga tgtatccacc gctgctcctg 1801 gttctcctgc tgaaggatct accgctgctc ctggttctcc tgctgaagga tccccagctg 1861 ctcctggatc tcccgctgat gtaaccactg ctgctcctgg cactcctgct gttcccaacg 1921 tccccgctgg tggtgctcct gctgattcca acgttcctgc tggtggtgct cctgctgatt 1981 ccaacgttcc cgctggtggt gctcctgctg gttccaacgt tcccgctggt ggtgctcctg 2041 ctgattccaa cgttcccgct ggtggtgctc ctgcaggttc caacgttccc gctggtggtg 2101 ctcctgctga ttccaacgtt cccgctggtg gtgctcctgc tgattctaat gtttccgctg 2161 gtggtgctcc tgcaggttcc aacgtccccg ctggtggtgc tcccgcaggt tccaacgttc 2221 ctgctggtgg tgctcctgca ggttccaacg ttcctgctgg tggtgctcct gctgattcca 2281 acgttcctgc tggtggtgct cctgcaggtt ccaacgttcc tgctggtgat gctcctgctg 2341 gttccaacgt tcttgctggt ggtgctcctg ctggttccaa ctcccccgct ggagctcccg 2401 tcgtccctaa ctcgccgctt agtccaccat ctggctcagt cattccatcg attcctgtac 2461 tgcctggcgg aggcggctct tggccttggc aagtccgccc taacattccc atcctgccgc 2521 ctaactggag gccccagctt cctggacagg aaggctcagg tgccggcgct cctgctcctg 2581 gcaatggact gaacaatggc agtgccaacc cgccccaacg tccacttccc ttctggccca 2641 actggcagaa ctgggtgaac agctggagac caaccaagcc agtgaccacc actgaggctc 2701 ctgcccagaa tcccgagaag ccccagaatc ccgagactgc cgagagcgta gagcaggctg 2761 ccccagtgcc accagccggc ggagctgcgt ccaatgagaa cgcctccgtt gaggagggca 2821 acaaggcctc cggcgagaag tcgaaggaca agcccaagtc tggcgaggat cagtccaagg 2881 agcaggagca gaagaagccc agctccgagg agaaggacaa ggacaaggac agcaaggaga 2941 agaaggacaa ggacagccag gagaagaagg acaagtccaa ggactccaag gaggagaagg 3001 ataacgagtc gcagaaggac aacgagaacg aagacgagct gagctccaag gagaagaagc 3061 agtacgtgaa ggacctgatc aagaagctga agaagggcga cgagtgcgac gaggacgacg 3121 tctatccgga tgtccgcgac tgccgcaaat actaccgctg cgaggtgaag cggtccggca 3181 agcacaagtt cgcccacctg cgctgcgaca aaaaggagcg ctacgattgg caagccaaga 3241 cctgtttgcc caaggacgag gcccgctgcc tggagaagta gaagggcggg ggtactagtc 3301 acccatctgt aaaatctgct gcttccgtat gataatctca gcctcaactg tacttctata 3361 ttggcaatga tattctatct gtaaaccttg gtcctaccta atttatttca ttattttaaa 3421 atacctttat ttttttgttt tcaacattaa atcttgaact ttatgaaaat ctggcaaa