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LOCUS XM_044395875 3988 bp mRNA linear INV 09-DEC-2024 (Chsy), mRNA. ACCESSION XM_044395875 VERSION XM_044395875.2 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_044395875.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3988 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3988 /gene="Chsy" /note="Chondroitin sulfate synthase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068647" CDS 771..3263 /gene="Chsy" /codon_start=1 /product="chondroitin sulfate synthase 1" /protein_id="XP_044251810.1" /db_xref="GeneID:108068647" /translation="MLQHTMTKRKTLIIACFGIALGLCIGTVLKNYRALEIVKRCSLR PTNLKSPAEIIGLREEDSIQNSQRNLVFVGVMTAKSFLEGRARAVYDTWGKEVPGRMA FFSSEGSYSEDLPVVGLKNVDDRYPPQKKSFMMLYYMYEHYIDRFEWFIRADDDVYME PDKLERFLRSIDSSKPQFIGQAGKGNSEEFGLLSLEFDENFCMGGPGVILSSETLRRV APHIPSCLKNLYSTHEDVEVGRCVQKFAGIPCTWNYEMQYILRHNSSGRNAYTGKLKR KEIHNAITLHPIKQAPLMYRLHSYVQGLKAEEMRQESLLLHRDIKRMAKYLEVPDEST YMLPSVSPESDSGKRHFQDHNILGISPELNKFVPGSTDDLLEWSFIARSLYSATSANP KQKIDSAMREGLEDVITEVMENINNYSRQRGRVIEFRELLYGYHRLDALHGQDLILDL LLIYKKYRGKKMTVPVRRHLYVQRAFTGIFVKEFDEDFYNVTLQQSLLGSLFQNGMAR LSSHFTMPSGLLAPTQDKIVFVLPIAGRLGTFERFLRTYERVCVRGEQHCDLLVVIFG PPEQLGEHLQLLHDLHARHVYQQVNWIQRSSAFSRGVALDVAARSSYIRQEDIILFID VDMVFEVETLQRVRMHTQRGKQVYLPIVFSQYDPQRRSSNGKEEEQAEESPRIDDESG YFRQFGFGICAIYKSDILDEDINGFDKDITGWGLEDVKFLEKIVRVGTRQRGFLANTA ELAMDYNEAAEQWRRLSVFRAPDPTLVHIYHEISCDTRLDAPQYNMCLGTKANSLGST RLMEQLFHGSPPNVQFAADFNRQKQQQQQQAR" misc_feature 981..>1523 /gene="Chsy" /note="Galactosyltransferase; Region: Galactosyl_T; cl21608" /db_xref="CDD:473923" misc_feature 1431..3173 /gene="Chsy" /note="Chondroitin N-acetylgalactosaminyltransferase; Region: CHGN; pfam05679" /db_xref="CDD:461712" polyA_site 3988 /gene="Chsy" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggatcggtta gttcttggac ggatttcaac gtttttcgac gtttgttctt tgcaccgagc 61 ccaaaacgag cgtgctcagt taaaaaggca taggaataaa taaaaacgaa aaacgcagca 121 atttgttaga taaattaatt cgccgcttgg agggaaaaag tgaaattgca cattatgaaa 181 ttggtttaat tattttctgt gcgtgtttgc cagagcttta ttatcttatt attttttttt 241 ttcgtgaatc gacctttgcg aacttatcgt cgtaaccagc aaaaaaaaat aaaaaatagc 301 agcaatgaca acaacaacga gggctaataa taattaaaca gcgtgtgttg ttgtgtgctc 361 accgaactgt cggtgtgtgc gtgaccgagt atctgtgagc gaagtagagt gtgtgtgtgt 421 tgtctttctg cggagacgtc caattgtcaa cagtcaacaa ttgcgtttgg gttcccctcc 481 agtcgagatc cccccacaga tactcctact ccatttgcac gcccctataa tataataaac 541 tcgtaatact cccctaataa taatcctatc atccgatcat ccgatcgatg cgaattgcat 601 gggcccaaca accggacagc aagaacacag taaaggcgaa aaaggcgaag aagcggaaaa 661 agtgctaacc gtgcaatcga cggcaacttg atcggttagg aacagagatt cccatgagag 721 gcgctcactg atccaccgat cctccaacca ccgatatatc cacatccacg atgctgcagc 781 acacgatgac gaagcgcaag acgctgatca tcgcctgctt cgggatcgcc ctgggcctct 841 gcatcggcac ggtgctgaag aactaccggg ctttggagat cgtgaagcga tgcagcctga 901 ggccgacgaa cctcaagtcg ccggcggaga tcatcgggct gcgggaggag gacagcatcc 961 agaactcgca gcggaatctc gtcttcgtgg gcgtgatgac cgcgaagagc ttcctggagg 1021 gcagggcgcg ggcggtgtac gatacgtggg gcaaggaggt gcccggccgg atggccttct 1081 tcagctccga gggcagctac tcggaggatc tgccagtggt cggactgaag aacgtcgacg 1141 atcgctatcc gccgcagaag aagtccttca tgatgctgta ctacatgtac gagcactaca 1201 tcgaccgctt cgagtggttc atccgcgccg acgacgacgt ctacatggag ccggacaagc 1261 tggagcgctt cctgcgctcc atcgacagct ccaagccgca gttcatcggc caggcgggca 1321 agggcaacag cgaggagttc ggcctgctgt ccctcgagtt cgacgagaac ttctgcatgg 1381 gcggacccgg ggtgatcttg agcagcgaga ccctgcgccg cgtggcgccc cacattccca 1441 gctgcctgaa gaacctctac agcacccacg aggacgtcga ggtgggccgc tgtgtccaga 1501 agttcgccgg cattccctgc acctggaact atgagatgca gtacatcctg cgacacaatt 1561 cgagtggccg aaatgcgtac actggaaaac tgaagcgcaa ggagatccac aacgccatca 1621 ccctgcatcc cattaaacag gcgccgctca tgtaccgcct gcactcctac gtccagggtc 1681 tgaaggccga ggagatgcgc caggagtcgc tgctcctgca tcgggacatc aagcggatgg 1741 ccaagtacct ggaggttccc gacgagagca cctacatgct gcccagcgtc tccccggaaa 1801 gcgattcggg caagaggcac ttccaggacc acaacatttt gggaatcagt ccggaactaa 1861 ataaattcgt gcccggcagc accgacgacc tcctggagtg gtccttcatc gcgcgcagcc 1921 tgtactcggc cacctcggcc aatcccaagc agaagatcga ctcggcgatg cgcgagggcc 1981 tcgaggacgt catcaccgag gtgatggaga acatcaacaa ctactcccgg cagcggggtc 2041 gcgtgatcga gttccgggag ctgctctacg gctaccatcg gctggacgcc ctgcacggcc 2101 aggatctgat cctggacctg ctgctcatct acaagaagta ccgcggcaag aagatgacgg 2161 tcccggtgcg caggcatctc tatgtccagc gggccttcac gggaatcttt gtcaaggagt 2221 tcgacgagga cttttacaac gtcaccctgc agcagagtct cctgggcagc ctcttccaga 2281 acggcatggc ccgcctgagc agccacttca cgatgcccag cggcctgctg gcgccgacgc 2341 aggacaagat cgtcttcgtc ctgccgatcg ccggtcgcct ggggaccttc gagcgcttcc 2401 tgcgcaccta cgagcgcgtc tgcgtgcgcg gcgagcagca ctgcgacctc ctggtggtga 2461 tcttcggccc gccggagcag ctgggcgagc acctgcagct gctgcacgat ctgcatgccc 2521 ggcatgtcta ccagcaggtc aactggatcc aaaggagcag cgccttctcg cgcggcgtgg 2581 ccctggatgt ggcggccaga tcctcgtaca tccggcagga ggacatcatc ctgttcatcg 2641 acgtggacat ggtcttcgag gtggagacgc tgcagcgggt gaggatgcac acgcagcgcg 2701 gcaagcaggt gtatctgccg attgtcttta gccagtacga tcctcagagg agatcctcca 2761 acgggaagga ggaggagcag gcggaggaat ccccgagaat cgacgatgag agcggctact 2821 tccggcagtt tggcttcggg atctgcgcca tctacaagtc ggacatcctc gacgaggaca 2881 tcaatggctt cgacaaggac atcaccggct ggggcctgga ggatgtcaag tttctggaga 2941 agatcgtgcg cgtgggcacc cggcagcgtg gcttcctggc caacacagcc gagctggcca 3001 tggattacaa cgaggccgcc gagcagtggc gccggctgag cgtcttccgg gctccggatc 3061 ccacgctcgt ccacatctac cacgagatca gctgcgacac ccggctggat gccccgcagt 3121 acaacatgtg cctgggcacc aaggccaact cgctgggcag cacgcggctg atggagcagc 3181 tctttcacgg cagtccgccg aatgtccagt ttgccgccga cttcaatcgc cagaagcagc 3241 agcaacagca gcaggccagg tgatgatgga tttaaatcca gagatccaga tccagatccc 3301 ttccagtgat ccccgccagc gatcctgcca catagtatta tgctaaatgt ttcctaaatt 3361 aatgagccag ccgaaatgcc aaatcaattc gttagtccct agacctaagc tagaaaaact 3421 aatgatccat actttcatat tcagtgatgg gataggatgg gtaagaaatt gtaaattact 3481 aggataatat ataaatagaa aatactttta tcctaactct tcttaagtaa ctcaactcca 3541 tactctttta cttatttatt ccatatttcc aagtcaagtt ctaatgatgt taatggatgt 3601 aataaatata aaaagtaaaa cataaactta ttcctagcag tcaattaaag ttttttttat 3661 cttctagtga ttttttttat tttaataaaa ccaattgtaa attttataag cgttaaaaat 3721 ggggtaaaac cggatataaa ttaaaaattt aagatgaagc gtggtttcga ttaagttaaa 3781 tattccacct actcacttcc catcactgta ggtagctaag aattttctat atttaattca 3841 aaaatacctt atctaaagaa cttgattata aaaaaactgt attccaataa ccaaaattgg 3901 gttgatcaaa gatatgcatt cagataaacg acttaattgt ataaagtagg tttttattat 3961 aaaataaaat cgaaagtctt tcgtttga