Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]

PREDICTED: Drosophila takahashii probable U3 small nucleolar


LOCUS       XM_044395654             860 bp    mRNA    linear   INV 09-DEC-2024
            RNA-associated protein 11 (LOC108054395), mRNA.
ACCESSION   XM_044395654
VERSION     XM_044395654.2
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_044395654.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..860
                     /gene="LOC108054395"
                     /note="probable U3 small nucleolar RNA-associated protein
                     11; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein"
                     /db_xref="GeneID:108054395"
     CDS             109..798
                     /gene="LOC108054395"
                     /codon_start=1
                     /product="probable U3 small nucleolar RNA-associated
                     protein 11"
                     /protein_id="XP_044251589.1"
                     /db_xref="GeneID:108054395"
                     /translation="MSSWKKASKSNQKVHRERHQPEARQHLGFLEKKQDYKKRALDAQ
                     KKQKTLKLLYRRAQNKNPDEFYHHMINSKLSNDEHREQEKKDEHTAEQLALMETQDLK
                     YVVMKRTMERKKIDRLRATLVDVDAATAGGAGNQRYTFDEEGNMWDETLGDRLEAADK
                     KPEPPNSTKQQRINELKKREVRERELAIVQQKIQLKNALKQPRLLKPRKLKGGTKESA
                     PVYKFRYERKK"
     misc_feature    142..795
                     /gene="LOC108054395"
                     /note="Utp11 protein; Region: Utp11; pfam03998"
                     /db_xref="CDD:461122"
     polyA_site      860
                     /gene="LOC108054395"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tctcacgccg agcatcacgt tttccgagcc aaacgaatcc aaaccaaaac aaacggatct
       61 ccatcccatt taattgctgc cggagaagga ttatagcctg ccaacaagat gtcctcgtgg
      121 aagaaggcct cgaagagcaa ccagaaggtg caccgggagc gccaccagcc ggaggcgcgc
      181 cagcacctgg gattcctcga gaagaagcag gactacaaga agcgcgcctt ggacgcccag
      241 aagaagcaga agaccctgaa gctcttgtac cggcgggcgc agaacaagaa tcccgatgag
      301 ttctaccacc acatgatcaa ctcgaagctc tcgaacgacg agcaccgcga gcaggagaag
      361 aaggacgagc acacggccga gcagctggcg ctcatggaga cgcaggacct caagtacgtg
      421 gtcatgaagc gcaccatgga gcgcaagaag atcgaccgct tgagggccac cctggtggac
      481 gtggacgccg ccacggcggg cggagcgggc aaccagcggt acaccttcga cgaggagggc
      541 aacatgtggg acgagaccct gggcgatcgg ctcgaggcgg cggacaagaa gccggaacca
      601 ccaaactcca caaaacagca gcgcatcaac gagctgaaga aacgagaggt tcgcgaaagg
      661 gagctggcca tcgtccagca gaagattcag ctgaagaacg cgctcaagca gccgcgtctt
      721 ctgaagcccc ggaaactgaa gggcggcacc aaggagagtg cgcccgtcta caaattccgc
      781 tacgagcgca agaaataagc atctttagtt ctttatcgta ataaagcttt taaggttagt
      841 caaacctgcg tcatatttta